BAC Information

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BAC

Clone NameB6Ng01-095A15
Chromosome17 (Build37)
Map Location 87,219,051 - 87,371,893
singlet/doubletdoublet
Overlap geneEpas1, 1700090G07Rik, Atp6v1e2, Rhoq
Upstream geneSrbd1, LOC545228, Prkce
Downstream genePigf, Cript, EG433144, Socs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095A15.bB6Ng01-095A15.g
ACCDH906085DH906086
length1,0431,072
definitionDH906085|Mus musculus domesticus DNA, BAC clone: B6Ng01-095A15, 5' end.DH906086|Mus musculus domesticus DNA, BAC clone: B6Ng01-095A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,219,051 - 87,220,096)(87,370,803 - 87,371,893)
sequence
gaattcaaactcacccctctgtttcctccctgggagctttgggtttcatc
tgatctaataatacagcaggggccattatggcatctcagacaagtctctt
actgtctctctggcataaaaacaaaaatatccaaatagactaccccaggg
gtggcaggacactccctgatgctctcagggagatgacccagccagagact
ccaaggtatggtgtcagccttctcttggagggcccccaatgcttttgtgc
tccctaggggttccccacccccaaggccgattggtagagacacacaactg
tattctgctcagctctggcctagctcaccagctagtgtctctgggtctgg
cttccttttttttcttggccttctaagccaatggggtctgtcaacacagc
cgggaaaatatcttcattttaagtacctgggaattcttggagggtagtgt
tatactttgtctcctggggagggccgttagagagctcagtggccatgtgg
aaagaagacggctccctgtttagagctccctcatctataaagagggatag
caaggaagctggtcctaccggtttgcagctgactcctgggggaaatacgt
tggaaaaacgttttggttggatattgtttttacttaatccatatatttaa
ccccccagcacacctaaggataactcacagtccaaatagaaagtacagac
tcttgattttctgggttttgtttatttttttcccccagtggagttaggaa
aagctgccctgagcacagaggcctgtatttaaccaagaggcctgcatcaa
gcaaagtctttccgccctatccccctacaagtacagttccattctagatc
ccctgccagtgtgtggggtctctgattcaccatgtgtgtcacagcttgtg
tgtgtttcccatccaaacgcctggagaagctccgtcctcagccagattta
gataatgaaagtcatcatttccaaatgggctaatatctatacactgtcac
tctcagagggaagagttgggctggtttctctttgttgtgctct
gaattcattacagaagagcagaccctggccttctatgcttctatcgcagg
ccccagcccagacttggttctcagggactgcttactggctggctagaggg
agaagctggagagatgctctcatctagagagctaccacagagagctagaa
gctagaggatctgggagcccacggatggaggtgcccatgcagactgctca
agcaggtaagctgtatggtcagcaagtggccgatgaagacatgggaagat
gtgtcttgatgaacgagacacgtttccgtgtaggtaactagcgagctctt
accactgtgtatactccacatcccagacatgccatttgtgaagaggcaac
ttcccctaaataagaaaacccctaaaggggagaaaggaggtacctaagtg
gtcacggcggggctgttcccaagcagcagaccgacagacagcaggtcagg
tgagcacggagaggcataaggcaaatggcagacagctatgttcacttacg
catcagcagtgtggcccaagcacccccaaggcgtgccctttttaaggaag
ttcaggggcatatgaacagcaagacaaaacagtctcaagttcacaggaac
aacatttgctggaagaattacagtcccaggccctgacgtcctacccagaa
accaccccacagactctagaaaagtgaatgcattttttgcagaaaacagt
caactctggagcccgcgtcagggaacaagacatttgcttaaggacaagct
gattagtgtcggctaacgcaaggatccaggacttgtcatttcaagtccta
tcctagaaacatgtcttttaactttcaccactatctggcctggagcagac
cactttaccttcctgattctgcaaaaaaaaaaatggggcaaacgccacta
agcctcctctttgacgcaaagaatgaaaagcaaagtggcagacaagctta
gcacgtgggaaatcacattcaaggctgagcccccactctacctgaggttc
agatttctctgccacacacaaagaaacagcacataaagcctctcctccgc
tattttctgctaaacagacgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_87219051_87220096
seq2: B6Ng01-095A15.b_30_1072

seq1  GAATTCAAACTCACCCCTCTGTTTCCTCCCTGGGAGCTTTGGGTTTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTCACCCCTCTGTTTCCTCCCTGGGAGCTTTGGGTTTCATC  50

seq1  TGATCTAATAATACAGCAGGGGCCATTATGGCATCTCAGACAAGTCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAATAATACAGCAGGGGCCATTATGGCATCTCAGACAAGTCTCTT  100

seq1  ACTGTCTCTCTGGCATAAAAACAAAAATATCCAAATAGACTACCCCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCTCTGGCATAAAAACAAAAATATCCAAATAGACTACCCCAGGG  150

seq1  GTGGCAGGACACTCCCTGATGCTCTCAGGGAGATGACCCAGCCAGAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGACACTCCCTGATGCTCTCAGGGAGATGACCCAGCCAGAGACT  200

seq1  CCAAGGTATGGTGTCAGCCTTCTCTTGGAGGGCCCCCAATGCTTTTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTATGGTGTCAGCCTTCTCTTGGAGGGCCCCCAATGCTTTTGTGC  250

seq1  TCCCTAGGGGTTCCCCACCCCCAAGGCCGATTGGTAGAGACACACAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGGGGTTCCCCACCCCCAAGGCCGATTGGTAGAGACACACAACTG  300

seq1  TATTCTGCTCAGCTCTGGCCTAGCTCACCAGCTAGTGTCTCTGGGTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGCTCAGCTCTGGCCTAGCTCACCAGCTAGTGTCTCTGGGTCTGG  350

seq1  CTTCCTTTTTTTTCTTGGCCTTCTAAGCCAATGGGGTCTGTCAACACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTTTTTTCTTGGCCTTCTAAGCCAATGGGGTCTGTCAACACAGC  400

seq1  CGGGAAAATATCTTCATTTTAAGTACCTGGGAATTCTTGGAGGGTAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAAATATCTTCATTTTAAGTACCTGGGAATTCTTGGAGGGTAGTGT  450

seq1  TATACTTTGTCTCCTGGGGAGGGCCGTTAGAGAGCTCAGTGGCCATGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTGTCTCCTGGGGAGGGCCGTTAGAGAGCTCAGTGGCCATGTGG  500

seq1  AAAGAAGACGGCTCCCTGTTTAGAGCTCCCTCATCTATAAAGAGGGATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGACGGCTCCCTGTTTAGAGCTCCCTCATCTATAAAGAGGGATAG  550

seq1  CAAGGAAGCTGGTCCTACCGGTTTGCAGCTGACTCCTGGGGGAAATACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGCTGGTCCTACCGGTTTGCAGCTGACTCCTGGGGGAAATACGT  600

seq1  TGGAAAAACGTTTTGGTTGGATATTGTTTTTACTTAATCCATATATTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAACGTTTTGGTTGGATATTGTTTTTACTTAATCCATATATTTAA  650

seq1  CCCCCCAGCACACCTAAGGATAACTCACAGTCCAAATAGAAAGTACAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAGCACACCTAAGGATAACTCACAGTCCAAATAGAAAGTACAGAC  700

seq1  TCTTGATTTTCTGGGTTTTGTTTATTTTTTTCCCCCAGTGGAGTTAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATTTTCTGGGTTTTGTTTATTTTTTTCCCCCAGTGGAGTTAGGAA  750

seq1  AAGCTGCCCTGAGCACAGAGGCCTGTATTTAACCAAGAGGCCTGCATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCCCTGAGCACAGAGGCCTGTATTTAACCAAGAGGCCTGCATCAA  800

seq1  GCAAAGTCTTTCCGCCCTATCCCCCTACAAGTACAGTTCCATTCTAGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTCTTTCCGCCCTATCCCCCTACAAGTACAGTTCCATTCTAGATC  850

seq1  CCCTGCCAGTGTGTGGGGTCTCTGATTCACCATGTGTGTCACAGCTTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCAGTGTGTGGGGTCTCTGATTCACCATGTGTGTCACAGCTTGTG  900

seq1  TGTGTTTCCCATCCAAACGCCTGGAGAAGCTCCGTCCTCAGCCAGATTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCCCATCCAAACGCCTGGAGAAGCTCCGTCCTCAGCCAGATTTA  950

seq1  GATAATTGAAAGTCATCATTTCCAAATGGGCTAATAATCTATACACTGTC  1000
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  GATAA-TGAAAGTCATCATTTCCAAATGGGCTAAT-ATCTATACACTGTC  998

seq1  ACTCTCAGAGGGGAAGAGTTGGGCTGGTTTCTCTTTGTTGTGCTCT  1046
      ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAGA-GGGAAGAGTTGGGCTGGTTTCTCTTTGTTGTGCTCT  1043

seq1: chr17_87370803_87371893
seq2: B6Ng01-095A15.g_71_1142 (reverse)

seq1  TGCGTCTTGGTTTTAGCAGAAAAATAAGCGGAGGAGGAGGCCTTTATTGT  50
      |||||||    ||||||||||||   ||||||||| |||| ||||||   
seq2  TGCGTCT---GTTTAGCAGAAAA--TAGCGGAGGA-GAGG-CTTTAT--G  41

seq1  TGCTGTTTCTTTTGTGGTGTGGCCAGAGATATCTGGAACCTCAGGGTAGA  100
      ||||||||| ||||| |||||| |||||| |||| |||||||| ||||| 
seq2  TGCTGTTTC-TTTGT-GTGTGG-CAGAGAAATCT-GAACCTCA-GGTAG-  85

seq1  AGTGGGGGCTCAGCCCTGAATGGTGATTTCCCACCGTGCTAAGCTTGTCT  150
      ||||||||||||||| ||||| ||||||||||| ||||||||||||||| 
seq2  AGTGGGGGCTCAGCCTTGAAT-GTGATTTCCCA-CGTGCTAAGCTTGTC-  132

seq1  TGCCACCTTTGCTTTTTCATCTTTGCGTCATAGAGGAGGCTAAGTGGCGT  200
      ||||| ||||||||||   ||||||||||| |||||||||| ||||||||
seq2  TGCCA-CTTTGCTTTTCATTCTTTGCGTCAAAGAGGAGGCTTAGTGGCGT  181

seq1  TTGCCCCATTTTTTTTTTTGCAGAATCAGGAAGGTAAAGTGGTCTGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCATTTTTTTTTTTGCAGAATCAGGAAGGTAAAGTGGTCTGCTCC  231

seq1  AGGCCAGATAGTGGTGAAAGTTAAAAGACATGTTTCTAGGATAGGACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGATAGTGGTGAAAGTTAAAAGACATGTTTCTAGGATAGGACTTG  281

seq1  AAATGACAAGTCCTGGATCCTTGCGTTAGCCGACACTAATCAGCTTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACAAGTCCTGGATCCTTGCGTTAGCCGACACTAATCAGCTTGTCC  331

seq1  TTAAGCAAATGTCTTGTTCCCTGACGCGGGCTCCAGAGTTGACTGTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAAATGTCTTGTTCCCTGACGCGGGCTCCAGAGTTGACTGTTTTC  381

seq1  TGCAAAAAATGCATTCACTTTTCTAGAGTCTGTGGGGTGGTTTCTGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAAATGCATTCACTTTTCTAGAGTCTGTGGGGTGGTTTCTGGGTA  431

seq1  GGACGTCAGGGCCTGGGACTGTAATTCTTCCAGCAAATGTTGTTCCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTCAGGGCCTGGGACTGTAATTCTTCCAGCAAATGTTGTTCCTGTG  481

seq1  AACTTGAGACTGTTTTGTCTTGCTGTTCATATGCCCCTGAACTTCCTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAGACTGTTTTGTCTTGCTGTTCATATGCCCCTGAACTTCCTTAA  531

seq1  AAAGGGCACGCCTTGGGGGTGCTTGGGCCACACTGCTGATGCGTAAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCACGCCTTGGGGGTGCTTGGGCCACACTGCTGATGCGTAAGTGA  581

seq1  ACATAGCTGTCTGCCATTTGCCTTATGCCTCTCCGTGCTCACCTGACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCTGTCTGCCATTTGCCTTATGCCTCTCCGTGCTCACCTGACCTG  631

seq1  CTGTCTGTCGGTCTGCTGCTTGGGAACAGCCCCGCCGTGACCACTTAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCGGTCTGCTGCTTGGGAACAGCCCCGCCGTGACCACTTAGGT  681

seq1  ACCTCCTTTCTCCCCTTTAGGGGTTTTCTTATTTAGGGGAAGTTGCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTTTCTCCCCTTTAGGGGTTTTCTTATTTAGGGGAAGTTGCCTCT  731

seq1  TCACAAATGGCATGTCTGGGATGTGGAGTATACACAGTGGTAAGAGCTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATGGCATGTCTGGGATGTGGAGTATACACAGTGGTAAGAGCTCG  781

seq1  CTAGTTACCTACACGGAAACGTGTCTCGTTCATCAAGACACATCTTCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTACCTACACGGAAACGTGTCTCGTTCATCAAGACACATCTTCCCA  831

seq1  TGTCTTCATCGGCCACTTGCTGACCATACAGCTTACCTGCTTGAGCAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCATCGGCCACTTGCTGACCATACAGCTTACCTGCTTGAGCAGTC  881

seq1  TGCATGGGCACCTCCATCCGTGGGCTCCCAGATCCTCTAGCTTCTAGCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGGCACCTCCATCCGTGGGCTCCCAGATCCTCTAGCTTCTAGCTC  931

seq1  TCTGTGGTAGCTCTCTAGATGAGAGCATCTCTCCAGCTTCTCCCTCTAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGTAGCTCTCTAGATGAGAGCATCTCTCCAGCTTCTCCCTCTAGC  981

seq1  CAGCCAGTAAGCAGTCCCTGAGAACCAAGTCTGGGCTGGGGCCTGCGATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTAAGCAGTCCCTGAGAACCAAGTCTGGGCTGGGGCCTGCGATA  1031

seq1  GAAGCATAGAAGGCCAGGGTCTGCTCTTCTGTAATGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATAGAAGGCCAGGGTCTGCTCTTCTGTAATGAATTC  1072