BAC Information

Click to search

BAC

Clone NameB6Ng01-095E20
Chromosome17 (Build37)
Map Location 51,618,396 - 51,763,781
singlet/doubletdoublet
Overlap geneLOC100043451, LOC100043452
Upstream genePlcl2, EG654432, Tbc1d5
Downstream geneSatb1, EG628919, LOC672987, EG328839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095E20.bB6Ng01-095E20.g
ACCDH906281DH906282
length1,0901,059
definitionDH906281|Mus musculus domesticus DNA, BAC clone: B6Ng01-095E20, 5' end.DH906282|Mus musculus domesticus DNA, BAC clone: B6Ng01-095E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,762,716 - 51,763,781)(51,618,396 - 51,619,465)
sequence
gaattcaggtcctgccttacaatttgcattttaagaagttccctgtaaat
tcataataaagtttaagaaattctgactgaataattttcattctcagctt
ggaaggatttgaatgacctagtggatatatttctaggtgtgcctgagagt
gtgtaatcagagagacttaactgagggaagatcctatatgtgcctggcac
catcccatggacggtcttctgtcctcagttggaataaaatggagaataag
aggtagatagttgaatactaacatttttctattcagcttcctaagtgcag
acacaatgtgaccagccaactcacttttccactaccacaccatccctgtg
atgatggactactgtagttaatcaaaccataaactcaaacaaacctttcc
ttccataaattgtccttttttaattttgtttgttttctttttcacagcaa
taaaaagagcaaccaacatagtgacttaggtttcattactacatcctacc
aaccataccaactccttcccatcttacctacacattcaatgatctgcaat
aatgataagatggctattgataaactggagtcttaaatcaatttttaaag
atcatgtcttttgttgaggtttgctcttccactgtgtattataatgctaa
gtgtgggtacccaagacttggttacccaagagatgagagagtctgcatgt
agtcccaagtgacactatgtgaccttgtccccaagttattactgactggt
aaataaaaatcctgacagccaatagctacgcagaagagacatagtaaggt
ttagagttcctgggcatggagggtcagaggagaaccacagggagagaaga
agtgaggagaggagagaaagtcaccatggactagagtggagaacacgtgg
ctctgagagctggccattgagtagagcagcccagtggacatagtgagtat
aactcaggttattgataggaaagtagattctatagcatagacagtagaaa
tttgccagcacttatagctcttgtgtgtttaatgttcatgtaagtaataa
aaagattgtgtggcctttatcagaatgaatgattctagcc
gaattcctgttgtaagatagtgtgatttttatgtcagtgagacttagggg
tacgtgttattacactttagccagttctactttaattaattttaggattt
ttttctaagtggattaggtgacttttcaggtttggaaaagacatttcagg
gaaacagcatgtgagaatgtaaggcagtatttccaaacgaagaagaagag
gaggaggaggaagaaaaggagcagggaaaaggcttctctttttgtctact
aagcctggtcatcctaggctaaaacctgctcttagagcttccagaacatt
ccatgtgcagaaaaacaaaaacaaaaacaaaaacaaaaacaaaaacaaaa
acaaaaacacccatgtacctctagttgaagaaaggctcccagggccgtgt
ggatacttttttgtaggaagtggagaatgcagggaaatgtcggtgccagc
gaggcacgtgtggaccactggagccctggactggagacagtaaggctgga
gaagccgcttctctgtggctgagcagttgttgacatggggtcccttctga
tgatggttagaatgtgctgcttgcctccaaaattcgtttgtattttttct
tatatttttctggcccctacctgggacctgtcccgggacgggcaatagaa
agtcttcttctgacagcgccttattctcattcctagactccagagtccag
aaactggggtcttgtcttttacaagggcaacacctagaattgtcacctgg
gctttctgaatcaggctgcagcctgggtgggctccctttctttcattgtc
tggtgtaatgctcactttttgccttttatcttctttctcctccacagtcc
agtggctagcctgttctttttctttaaagaaaatgttggacctacataga
agtgggtcacatttttccagttaaaagtgactgtttctggttaaattttt
gggtcgtggcccacttccaatctattctcttacagtgtgtgagctggggc
aggtcactacgcttttaagctcagttccaatctagcatggcatatgacca
tcttgctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_51762716_51763781
seq2: B6Ng01-095E20.b_92_1139 (reverse)

seq1  GCCTAG-ATCATTCAATTCCTGGATAAAAGCCACACAA-CTTTTTATTAC  48
      | |||| ||||||| ||||   |||||| ||||||||| |||||||||||
seq2  GGCTAGAATCATTC-ATTC--TGATAAAGGCCACACAATCTTTTTATTAC  47

seq1  TTACAATGAACATTAAACAACACAAGAGCTATAAGTGCTGGGCAAATGTC  98
      |||| ||||||||||||| |||||||||||||||||||| ||||||| ||
seq2  TTAC-ATGAACATTAAAC-ACACAAGAGCTATAAGTGCT-GGCAAATTTC  94

seq1  TACTGTCTATGCTATTAGAATCTACTTTCCTATCAATAACCCTGAGTTAT  148
      |||||||||||||| |||||||||||||||||||||||| ||||||||| 
seq2  TACTGTCTATGCTA-TAGAATCTACTTTCCTATCAATAA-CCTGAGTTA-  141

seq1  TACTCACTATGTTCCACCTGGGCTGCTCTTAACTCCAATTGGCCAGCTCT  198
      ||||||||||| |||| ||||||||||||  ||||  | |||||||||||
seq2  TACTCACTATG-TCCA-CTGGGCTGCTCT--ACTC--AATGGCCAGCTCT  185

seq1  CAGAGCCACGTGTTCTCCACTCCTAGTCCATGGTGACTTTCTCCTCCTCT  248
      ||||||||||||||||||||| |||||||||||||||||||| |||||| 
seq2  CAGAGCCACGTGTTCTCCACT-CTAGTCCATGGTGACTTTCT-CTCCTC-  232

seq1  TCCTCACCTTCTTCTCTCCCTGTGGTTCTCCTCTGACCCTCCATGCCCAG  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCA-CTTCTTCTCTCCCTGTGGTTCTCCTCTGACCCTCCATGCCCAG  281

seq1  GAACTCTAAACCTTACCTATGTCTCTTCTGCGTAGCTATTGGCTGTCAGG  348
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAACTCTAAACCTTA-CTATGTCTCTTCTGCGTAGCTATTGGCTGTCAGG  330

seq1  ATTTTTATTTACCAGTCAGTAATAACTTGGGGACAAGGTCACATAGTGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTACCAGTCAGTAATAACTTGGGGACAAGGTCACATAGTGTC  380

seq1  ACTTGGGACTACATGCAGACTCTCTCATCTCTTGGGTAACCAAGTCTTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGACTACATGCAGACTCTCTCATCTCTTGGGTAACCAAGTCTTGG  430

seq1  GTACCCACACTTAGCATTATAATACACAGTGGAAGAGCAAACCTCAACAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCACACTTAGCATTATAATACACAGTGGAAGAGCAAACCTCAACAA  480

seq1  AAGACATGATCTTTAAAAATTGATTTAAGACTCCAGTTTATCAATAGCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGATCTTTAAAAATTGATTTAAGACTCCAGTTTATCAATAGCCA  530

seq1  TCTTATCATTATTGCAGATCATTGAATGTGTAGGTAAGATGGGAAGGAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCATTATTGCAGATCATTGAATGTGTAGGTAAGATGGGAAGGAGT  580

seq1  TGGTATGGTTGGTAGGATGTAGTAATGAAACCTAAGTCACTATGTTGGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGGTTGGTAGGATGTAGTAATGAAACCTAAGTCACTATGTTGGTT  630

seq1  GCTCTTTTTATTGCTGTGAAAAAGAAAACAAACAAAATTAAAAAAGGACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTTTATTGCTGTGAAAAAGAAAACAAACAAAATTAAAAAAGGACA  680

seq1  ATTTATGGAAGGAAAGGTTTGTTTGAGTTTATGGTTTGATTAACTACAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGGAAGGAAAGGTTTGTTTGAGTTTATGGTTTGATTAACTACAGT  730

seq1  AGTCCATCATCACAGGGATGGTGTGGTAGTGGAAAAGTGAGTTGGCTGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATCATCACAGGGATGGTGTGGTAGTGGAAAAGTGAGTTGGCTGGT  780

seq1  CACATTGTGTCTGCACTTAGGAAGCTGAATAGAAAAATGTTAGTATTCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGTGTCTGCACTTAGGAAGCTGAATAGAAAAATGTTAGTATTCAA  830

seq1  CTATCTACCTCTTATTCTCCATTTTATTCCAACTGAGGACAGAAGACCGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTACCTCTTATTCTCCATTTTATTCCAACTGAGGACAGAAGACCGT  880

seq1  CCATGGGATGGTGCCAGGCACATATAGGATCTTCCCTCAGTTAAGTCTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGATGGTGCCAGGCACATATAGGATCTTCCCTCAGTTAAGTCTCT  930

seq1  CTGATTACACACTCTCAGGCACACCTAGAAATATATCCACTAGGTCATTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTACACACTCTCAGGCACACCTAGAAATATATCCACTAGGTCATTC  980

seq1  AAATCCTTCCAAGCTGAGAATGAAAATTATTCAGTCAGAATTTCTTAAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTCCAAGCTGAGAATGAAAATTATTCAGTCAGAATTTCTTAAAC  1030

seq1  TTTATTATGAATTTACAG  1066
      ||||||||||||||||||
seq2  TTTATTATGAATTTACAG  1048

seq1: chr17_51618396_51619465
seq2: B6Ng01-095E20.g_66_1124

seq1  GAATTCCTGTTGTAAGATAGTGTGATTTTTATGTCAGTGAGACTTAGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTGTAAGATAGTGTGATTTTTATGTCAGTGAGACTTAGGGG  50

seq1  TACGTGTTATTACACTTTAGCCAGTTCTACTTTAATTAATTTTAGGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGTTATTACACTTTAGCCAGTTCTACTTTAATTAATTTTAGGATTT  100

seq1  TTTTCTAAGTGGATTAGGTGACTTTTCAGGTTTGGAAAAGACATTTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAGTGGATTAGGTGACTTTTCAGGTTTGGAAAAGACATTTCAGG  150

seq1  GAAACAGCATGTGAGAATGTAAGGCAGTATTTCCAAACGAAGAAGAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCATGTGAGAATGTAAGGCAGTATTTCCAAACGAAGAAGAAGAG  200

seq1  GAGGAGGAGGAAGAAAAGGAGCAGGGAAAAGGCTTCTCTTTTTGTCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAGGAAGAAAAGGAGCAGGGAAAAGGCTTCTCTTTTTGTCTACT  250

seq1  AAGCCTGGTCATCCTAGGCTAAAACCTGCTCTTAGAGCTTCCAGAACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGGTCATCCTAGGCTAAAACCTGCTCTTAGAGCTTCCAGAACATT  300

seq1  CCATGTGCAGAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGCAGAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAA  350

seq1  ACAAAAACACCCATGTACCTCTAGTTGAAGAAAGGCTCCCAGGGCCGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACACCCATGTACCTCTAGTTGAAGAAAGGCTCCCAGGGCCGTGT  400

seq1  GGATACTTTTTTGTAGGAAGTGGAGAATGCAGGGAAATGTCGGTGCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTTTTTTGTAGGAAGTGGAGAATGCAGGGAAATGTCGGTGCCAGC  450

seq1  GAGGCACGTGTGGACCACTGGAGCCCTGGACTGGAGACAGTAAGGCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACGTGTGGACCACTGGAGCCCTGGACTGGAGACAGTAAGGCTGGA  500

seq1  GAAGCCGCTTCTCTGTGGCTGAGCAGTTGTTGACATGGGGTCCCTTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCGCTTCTCTGTGGCTGAGCAGTTGTTGACATGGGGTCCCTTCTGA  550

seq1  TGATGGTTAGAATGTGCTGCTTGCCTCCTTTTTTTTTTTTTTTTTTTTTT  600
      ||||||||||||||||||||||||||||             ||  ||| |
seq2  TGATGGTTAGAATGTGCTGCTTGCCTCC---------AAAATTCGTTTGT  591

seq1  TTTTTTTTTTTTTTTTTTTTTGCCTCTACCTTGTGACCTGTCACCGGGAC  650
       |||||| || | ||||| | ||| ||||| || |||||||| |||||||
seq2  ATTTTTTCTTATATTTTTCTGGCCCCTACC-TGGGACCTGTC-CCGGGAC  639

seq1  TGGGCAATAGAAAGTC-TCATCTGACAGCGCCTTATACTCA-TCCTAGAC  698
       ||||||||||||||| || |||||||||||||||| |||| ||||||||
seq2  -GGGCAATAGAAAGTCTTCTTCTGACAGCGCCTTATTCTCATTCCTAGAC  688

seq1  TCCAGAGTCCAGAAACT-GGGTCTTGTCTTTCACAA-GGCAACACCTAG-  745
      ||||||||||||||||| ||||||||||||| |||| |||||||||||| 
seq2  TCCAGAGTCCAGAAACTGGGGTCTTGTCTTTTACAAGGGCAACACCTAGA  738

seq1  ACTGTCAC--TGGCTTCCTGACTCAGGCTGCAGCCTGG--TGGCTCCATT  791
      | ||||||   ||||| |||| ||||||||||||||||   |||||| ||
seq2  ATTGTCACCTGGGCTTTCTGAATCAGGCTGCAGCCTGGGTGGGCTCCCTT  788

seq1  TCTTTCATTGTCTGTGTTAATGCTCACTTTTTGCCTTTTATCTTCTTTCT  841
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  TCTTTCATTGTCTGGTGTAATGCTCACTTTTTGCCTTTTATCTTCTTTCT  838

seq1  C--TCACAGTCCAGTGGCCTAGCCTGTTC-TTTTCTTTAAAGAAAATGTA  888
      |   ||||||||||||| ||||||||||| ||||||||||||||||||| 
seq2  CCTCCACAGTCCAGTGG-CTAGCCTGTTCTTTTTCTTTAAAGAAAATGT-  886

seq1  TGGA-CTACATAG-AGT-GGTCACA-TTTTCCAGTTAAGAGTTGACTGTT  934
      |||| |||||||| ||| ||||||| |||||||||||| || ||||||||
seq2  TGGACCTACATAGAAGTGGGTCACATTTTTCCAGTTAAAAG-TGACTGTT  935

seq1  TCTGGTTAAATTTTTGTGTCCGTGCCCACTTCCAATTCTATCCTCTTAAC  984
      |||||||||||||||| |||   |||||||||||| ||||| ||||| ||
seq2  TCTGGTTAAATTTTTGGGTCGTGGCCCACTTCCAA-TCTATTCTCTT-AC  983

seq1  AGTTGTGTGACATTGGGCAGGTCACTCACGCTTTTTAAGCTTCAGTTTCC  1034
      || |||||||  | |||||||||||| |||| |||||||| ||||||  |
seq2  AG-TGTGTGAGCTGGGGCAGGTCACT-ACGC-TTTTAAGC-TCAGTT--C  1027

seq1  CATTCTAAGCATGGCATAATGACCCATCCTTGCTAC  1070
      || ||| |||||||||| |||| |||| ||||||||
seq2  CAATCT-AGCATGGCAT-ATGA-CCAT-CTTGCTAC  1059