BAC Information

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BAC

Clone NameB6Ng01-095L10
Chromosome17 (Build37)
Map Location 31,300,247 - 31,468,922
singlet/doubletdoublet
Overlap geneTff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1
Upstream geneZfand3, Btbd9, EG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904
Downstream genePde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095L10.bB6Ng01-095L10.g
ACCDH906578DH906579
length1,0651,070
definitionDH906578|Mus musculus domesticus DNA, BAC clone: B6Ng01-095L10, 5' end.DH906579|Mus musculus domesticus DNA, BAC clone: B6Ng01-095L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,300,247 - 31,301,315)(31,467,848 - 31,468,922)
sequence
gaattcagaggctaacagacccatgaaggacgtgagccacacagtacaac
catcccaatgtgtggggcttatgcttggggctggcgggagccctcgagat
gggctgaggacgtcaagactgaaagggaggggaaaggtccctgtagagaa
ggctgagcatttacagtaggtgtcccaagaacgtatcagggtccagaagc
ctgggggcattcatcaggggttgcctctaggactctttcctagcgtgagg
atctcctgaaacattcttgaagaacggactcttatctttcaagataagat
cgggacctgtcatctacttgctggtgacctgtggggcgggggtgctggcc
tctaatataaagctaagatgagcactggccacagcacaggacaataaggg
gtcacaaggagccctttaggccgtggagaatcagtagccagaagaagaag
ggatgttgctgttcccctgtggcttccagctccctttcccagcaggactt
aaagatggctgtcctgcctgcacctgtgtggtcatctgaggaagttactg
aaagcaagctcccttcaggagaggtgcaggcagccaccatatcctatagg
atatgtctacgtatctacagatagacctctatggaaacaaggtcaccatg
tgacccagaaacaggtgttgagccctggtccaggaaatggggcagaggaa
agcatggtggctggtactggggtatgggtgggggcctggagagagcacgg
agcagctgttgaatgcacccccctcccttcaccttctactccaaagccat
ttacttctccctcagagtcccctggctggctccttgtcctctgtcacaga
ctggtgcagaggggcctaggcagtataaggtccctttctcctccccactt
ttcccaactacctcctcccactcaagggacatcagtgatgctgggaaagg
ttagcagaagaattcttcacctcttctctattgcttctcagctggaaact
tccctgttccctctcttagcacttgtgtctgagacgagtctctttcacag
cggcaagctcagctt
gaattcttcacaggactctggaccttgcaaggaggtcacagtgtacaaag
actgccagaaacgatgttattttaaaatttataagccagttctgagattt
gtgccttccgataccggggacatccccgagggacagaatttgtgcttact
ggagcacggtggagaaatcccagctctgcgtggagttttaagtcatagca
agggtgatagaaagaggctttctctgaatgaaccatgaatcccagtggat
taaataggagtgctcctaagggcttcaggcatgtcgtgccgtaggaccta
acagccattgatgcattttgttttactctaaaccatgcagggtgaatata
aaccacagaagaatttaaaaaaaaaaaagatattggggttggggagatgg
cttaggttaagagcacttgctgctttagcaaaggacccaggttcaatttc
cagcactcacagaatgcctgtgacttcagcgctaggaatccagcgccccc
tcctggtctctgtggggactgcacacacagttcgcatacagattaaataa
aaggcactcacatacatattaaataaaaaagatgaaacgtaggggacagg
ttttgacatgcagagactcagcattgtgtgtgagcttgagatgcccacgt
cacccaggctgagctcagtagccaggacattctcacactgaacgccatac
ttaagaaggcagagggaaagctcaggtgtgaaggaggggcgcgttccgct
cctcacggtcacactgcgacctggcaatgctttcaatggatcaagttagg
tgtccagcttgggaggcatgccaccattccttcatcataactaacactgg
gttctctgaagagcccgggacctcatttcccaggctgtacgagctttaga
atctctgaacatgctccagcttcagggtaaccccttggcgactagctgag
aactgctatgactttacgtgcccttttaatagaaaggggcctgaccaggg
ttagatgcagcagcccaaagctatttagtgcaaagggaggagcagtctgg
actggatgctattaaggaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_31300247_31301315
seq2: B6Ng01-095L10.b_48_1112

seq1  GAATTCAGAGGCTAACAGACCCATGAAGGACGTGAGCCACACAGTACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGCTAACAGACCCATGAAGGACGTGAGCCACACAGTACAAC  50

seq1  CATCCCAATGTGTGGGGCTTATGCTTGGGGCTGGCGGGAGCCCTCGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAATGTGTGGGGCTTATGCTTGGGGCTGGCGGGAGCCCTCGAGAT  100

seq1  GGGCTGAGGACGTCAAGACTGAAAGGGAGGGGAAAGGTCCCTGTAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGGACGTCAAGACTGAAAGGGAGGGGAAAGGTCCCTGTAGAGAA  150

seq1  GGCTGAGCATTTACAGTAGGTGTCCCAAGAACGTATCAGGGTCCAGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGCATTTACAGTAGGTGTCCCAAGAACGTATCAGGGTCCAGAAGC  200

seq1  CTGGGGGCATTCATCAGGGGTTGCCTCTAGGACTCTTTCCTAGCGTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGCATTCATCAGGGGTTGCCTCTAGGACTCTTTCCTAGCGTGAGG  250

seq1  ATCTCCTGAAACATTCTTGAAGAACGGACTCTTATCTTTCAAGATAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTGAAACATTCTTGAAGAACGGACTCTTATCTTTCAAGATAAGAT  300

seq1  CGGGACCTGTCATCTACTTGCTGGTGACCTGTGGGGCGGGGGTGCTGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGACCTGTCATCTACTTGCTGGTGACCTGTGGGGCGGGGGTGCTGGCC  350

seq1  TCTAATATAAAGCTAAGATGAGCACTGGCCACAGCACAGGACAATAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATATAAAGCTAAGATGAGCACTGGCCACAGCACAGGACAATAAGGG  400

seq1  GTCACAAGGAGCCCTTTAGGCCGTGGAGAATCAGTAGCCAGAAGAAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAGGAGCCCTTTAGGCCGTGGAGAATCAGTAGCCAGAAGAAGAAG  450

seq1  GGATGTTGCTGTTCCCCTGTGGCTTCCAGCTCCCTTTCCCAGCAGGACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTGCTGTTCCCCTGTGGCTTCCAGCTCCCTTTCCCAGCAGGACTT  500

seq1  AAAGATGGCTGTCCTGCCTGCACCTGTGTGGTCATCTGAGGAAGTTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGGCTGTCCTGCCTGCACCTGTGTGGTCATCTGAGGAAGTTACTG  550

seq1  AAAGCAAGCTCCCTTCAGGAGAGGTGCAGGCAGCCACCATATCCTATAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGCTCCCTTCAGGAGAGGTGCAGGCAGCCACCATATCCTATAGG  600

seq1  ATATGTCTACGTATCTACAGATAGACCTCTATGGAAACAAGGTCACCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTACGTATCTACAGATAGACCTCTATGGAAACAAGGTCACCATG  650

seq1  TGACCCAGAAACAGGTGTTGAGCCCTGGTCCAGGAAATGGGGCAGAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCAGAAACAGGTGTTGAGCCCTGGTCCAGGAAATGGGGCAGAGGAA  700

seq1  AGCATGGTGGCTGGTACTGGGGTATGGGTGGGGGCCTGGAGAGAGCACGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGTGGCTGGTACTGGGGTATGGGTGGGGGCCTGGAGAGAGCACGG  750

seq1  AGCAGCTGTTGAATGCACCCCCCTCCCTTCACCTTCTACTCCAAAGCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGTTGAATGCACCCCCCTCCCTTCACCTTCTACTCCAAAGCCAT  800

seq1  TTACTTCTCCCTCAGAGTCCCCTGGCTGGCTCCTTGTCCTCTGTCACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCTCCCTCAGAGTCCCCTGGCTGGCTCCTTGTCCTCTGTCACAGA  850

seq1  CTGGTGCAGAGGGGCCTAGGCAGTTATAAGGTCCCTTTCTCCTCCCCAC-  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  CTGGTGCAGAGGGGCCTAGGCAG-TATAAGGTCCCTTTCTCCTCCCCACT  899

seq1  TCTCCCAACTACCTCCTCCCACTCAAGGGACATCAGTGATGCTGGAAAAG  949
      | ||||||||||||||||||||||||||||||||||||||||||| ||| 
seq2  TTTCCCAACTACCTCCTCCCACTCAAGGGACATCAGTGATGCTGGGAAA-  948

seq1  GGTAAGCAG-AGCATTCTTCA-CTCTTCTCTAATGCTCCTCAGCCTGGAA  997
      ||| ||||| || |||||||| |||||||||| |||| ||||| ||||||
seq2  GGTTAGCAGAAGAATTCTTCACCTCTTCTCTATTGCTTCTCAG-CTGGAA  997

seq1  ACTTCCCTGTTCCCTCTTCCTTAGCAC-TGTGTCTGAGAACGAAGCTC-T  1045
      |||||||||||||||||  |||||||| |||||||||| ||||  ||| |
seq2  ACTTCCCTGTTCCCTCT--CTTAGCACTTGTGTCTGAG-ACGAGTCTCTT  1044

seq1  TCACAGCCGGGCAAAGCTCAGCTT  1069
      |||||||  ||| |||||||||||
seq2  TCACAGC--GGC-AAGCTCAGCTT  1065

seq1: chr17_31467848_31468922
seq2: B6Ng01-095L10.g_68_1137 (reverse)

seq1  TGTCCTT-ATAGCTATCCAGGTCCCAGACTGCTCCTCCCTTTGCACTTAA  49
      ||||||| ||||| ||||||   |||||||||||||||||||||||| ||
seq2  TGTCCTTAATAGC-ATCCAG--TCCAGACTGCTCCTCCCTTTGCACTAAA  47

seq1  TTGCTTTGTGGCTTGCTGCATCTTAACCCCTGGTCAGGGCCCCTTTCTAT  99
      | |||||| ||| ||||||||||  | ||||||||| |||||||||||| 
seq2  TAGCTTTG-GGC-TGCTGCATCT--AACCCTGGTCA-GGCCCCTTTCTA-  91

seq1  TTAAAAGGGCACGTAAAGTCAT-GCAGGTCTCAGCTTGGTCGCC-AGGGG  147
      |||||||||||||||||||||| |||| ||||||| | |||||| |||||
seq2  TTAAAAGGGCACGTAAAGTCATAGCAGTTCTCAGC-TAGTCGCCAAGGGG  140

seq1  TTACCCTGAAGCTTGGAGC-TGTTCAGAGATTCTTAAAGCTCGGTCAGCC  196
      |||||||||||| |||||| ||||||||||||| |||||||||  |||||
seq2  TTACCCTGAAGC-TGGAGCATGTTCAGAGATTC-TAAAGCTCGTACAGCC  188

seq1  TGGG-AATGAGGTCCCGGGCTC-TCAGAGAAGCCAGTGTTAGGTATGATG  244
      |||| ||||||||||||||||| |||||||| |||||||||| |||||||
seq2  TGGGAAATGAGGTCCCGGGCTCTTCAGAGAACCCAGTGTTAGTTATGATG  238

seq1  AAGGAATGGTGGCATGCCTCCCAAGCTGGACACCTAACTTGATCCATTGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGGTGGCATGCCTCCCAAGCTGGACACCTAACTTGATCCATTGA  288

seq1  AAGCATTGCCAGGTCGCAGTGTGACCGTGAGGAGCGGAACGCGCCCCTCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTGCCAGGTCGCAGTGTGACCGTGAGGAGCGGAACGCGCCCCTCC  338

seq1  TTCACACCTGAGCTTTCCCTCTGCCTTCTTAAGTATGGCGTTCAGTGTGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACCTGAGCTTTCCCTCTGCCTTCTTAAGTATGGCGTTCAGTGTGA  388

seq1  GAATGTCCTGGCTACTGAGCTCAGCCTGGGTGACGTGGGCATCTCAAGCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCCTGGCTACTGAGCTCAGCCTGGGTGACGTGGGCATCTCAAGCT  438

seq1  CACACACAATGCTGAGTCTCTGCATGTC-AAACCTGTCCCCTACGTTTCA  493
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CACACACAATGCTGAGTCTCTGCATGTCAAAACCTGTCCCCTACGTTTCA  488

seq1  TCTTTTTTATTTAATATGTATGTGAGTGCCTTTTATTTAATCTGTATGCG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTATTTAATATGTATGTGAGTGCCTTTTATTTAATCTGTATGCG  538

seq1  AACTGTGTGTGCAGTCCCCACAGAGACCAGGAGGGGGCGCTGGATTCCTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTGTGCAGTCCCCACAGAGACCAGGAGGGGGCGCTGGATTCCTA  588

seq1  GCGCTGAAGTCACAGGCATTCTGTGAGTGCTGGAAATTGAACCTGGGTCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGAAGTCACAGGCATTCTGTGAGTGCTGGAAATTGAACCTGGGTCC  638

seq1  TTTGCTAAAGCAGCAAGTGCTCTTAACCTAAGCCATCTCCCCAACCCCAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAAAGCAGCAAGTGCTCTTAACCTAAGCCATCTCCCCAACCCCAA  688

seq1  TATCTTTTTTTTTTTTAAATTCTTCTGTGGTTTATATTCACCCTGCATGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTTTTTTTTTAAATTCTTCTGTGGTTTATATTCACCCTGCATGG  738

seq1  TTTAGAGTAAAACAAAATGCATCAATGGCTGTTAGGTCCTACGGCACGAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGTAAAACAAAATGCATCAATGGCTGTTAGGTCCTACGGCACGAC  788

seq1  ATGCCTGAAGCCCTTAGGAGCACTCCTATTTAATCCACTGGGATTCATGG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGAAGCCCTTAGGAGCACTCCTATTTAATCCACTGGGATTCATGG  838

seq1  TTCATTCAGAGAAAGCCTCTTTCTATCACCCTTGCTATGACTTAAAACTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCAGAGAAAGCCTCTTTCTATCACCCTTGCTATGACTTAAAACTC  888

seq1  CACGCAGAGCTGGGATTTCTCCACCGTGCTCCAGTAAGCACAAATTCTGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCAGAGCTGGGATTTCTCCACCGTGCTCCAGTAAGCACAAATTCTGT  938

seq1  CCCTCGGGGATGTCCCCGGTATCGGAAGGCACAAATCTCAGAACTGGCTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGGGGATGTCCCCGGTATCGGAAGGCACAAATCTCAGAACTGGCTT  988

seq1  ATAAATTTTAAAATAACATCGTTTCTGGCAGTCTTTGTACACTGTGACCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTTAAAATAACATCGTTTCTGGCAGTCTTTGTACACTGTGACCT  1038

seq1  CCTTGCAAGGTCCAGAGTCCTGTGAAGAATTC  1075
      ||||||||||||||||||||||||||||||||
seq2  CCTTGCAAGGTCCAGAGTCCTGTGAAGAATTC  1070