BAC Information

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BAC

Clone NameB6Ng01-096D09
Chromosome17 (Build37)
Map Location 89,776,984 - 89,915,123
singlet/doubletdoublet
Overlap geneLOC100043904
Upstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
Downstream geneLOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096D09.bB6Ng01-096D09.g
ACCDH906937DH906938
length4211,000
definitionDH906937|Mus musculus domesticus DNA, BAC clone: B6Ng01-096D09, 5' end.DH906938|Mus musculus domesticus DNA, BAC clone: B6Ng01-096D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,776,984 - 89,777,410)(89,914,124 - 89,915,123)
sequence
ttgctatatcagtgatgtcccaaagtccctactcctcactttcttttgac
ctttgctgaaatgtcagcttctcaggaagacctcctttgttcacatcatt
tgatagatcaatctaactttctagcattttctcctggctcctctccatag
tcctatttgctactgtttgatatactatgtaacttaatttttcccagtaa
atccattgagctcccagaattttggttattgttatatccccagacccgta
gtgtatatacacacttgttaaaggcaacaaatttaaaacaatgttaaaat
ggatactaaagtttcagaggcccattggacacgcaaactgtatatgcccc
agtacaggggaaggccagggccaaaaaaaaaaaaaaatgggaatgggtgg
gtagggaagtgggcgggggga
gaattcttttcagcaacaacaaaataaaactgtgttactttcattaggtg
aaccttgccagtttccacttaaactctgccactgaattacgggcaccttt
ctgagataatttgtaatgactgatttaacaagactgatacacaacaccaa
atgtattaaacctccaattgcctctgcatgcagcaaagcatattatcccc
cacacaagatgaagttcacccatgattttatcaatatatgtcatatcttg
ggtcacagaattttcatatttaaagcactaagacctttatggaaaaaaat
tctcaaatttaaaaagcaaatctgcaaagataaaaataaagacaaaacaa
aacaaaccccacaaatatcatttgatcttcaatgcctaagtttatgacaa
gctagtttgtgtctcctgattccccttaaactaaattcctacatgccatc
tggctcacctcttaatttttattgatatctttcattgtcgatgccaaatg
aatcaggactgtgttaaatttaagattatacctctctatgtaatgatgat
gctaagtggatctgactaattatttaattgagaataatggcatgcaactc
ccatctcttcttcatgatgatgaaaatacttcaaacaagtaggaagcatt
aattaatcctatttttatctttaacttattaaaacttaatccaggaaatc
tgttgcttgatacgtcctctgaatcagccaaatgggaaaagtttacactc
agtatggtttgtcatttttcaaatgttacaataaaaaattgatacaggat
aagaaagagaaaataatccttttagatatttacttaaaaatagttcattt
aagctgggtggtggtggtgcatgcctttaatcccagcacttgggaggcag
aggcagacagttttctgagttcaaggccagcctggtctacagagtgagtt
ccaggacaccaggactttacagagaaactctgtctctaaaaaaaataata

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89776984_89777410
seq2: B6Ng01-096D09.b_46_472

seq1  GAATTCTTGCTATATCAGTGATGTCCCAAAGTCCCTACTCCTCACTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTATATCAGTGATGTCCCAAAGTCCCTACTCCTCACTTTCT  50

seq1  TTTGACCTTTGCTGAAATGTCAGCTTCTCAGGAAGACCTCCTTTGTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCTTTGCTGAAATGTCAGCTTCTCAGGAAGACCTCCTTTGTTCAC  100

seq1  ATCATTTGATAGATCAATCTAACTTTCTAGCATTTTCTCCTGGCTCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGATAGATCAATCTAACTTTCTAGCATTTTCTCCTGGCTCCTCT  150

seq1  CCATAGTCCTATTTGCTACTGTTTGATATACTATGTAACTTAATTTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTCCTATTTGCTACTGTTTGATATACTATGTAACTTAATTTTTCC  200

seq1  CAGTAAATCCATTGAGCTCCCAGAATTTTGGTTATTGTTATATCCCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAATCCATTGAGCTCCCAGAATTTTGGTTATTGTTATATCCCCAGA  250

seq1  CCCGTAGTGTATATACACACTTGTTAAAGGCAACAAATTTAAAACAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTAGTGTATATACACACTTGTTAAAGGCAACAAATTTAAAACAATGT  300

seq1  TAAAATGGATACTAAAGTTTCAGAGGCCCATTGGACACGCAAACTGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGATACTAAAGTTTCAGAGGCCCATTGGACACGCAAACTGTATA  350

seq1  TGCCCCAGTACAGGGGAAGGCCAGGGCCAAAAAAAAAAAAAAATGGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAGTACAGGGGAAGGCCAGGGCCAAAAAAAAAAAAAAATGGGAAT  400

seq1  GGGTGGGTAGGGAAGTGGGCGGGGGGA  427
      |||||||||||||||||||||||||||
seq2  GGGTGGGTAGGGAAGTGGGCGGGGGGA  427

seq1: chr17_89914124_89915123
seq2: B6Ng01-096D09.g_69_1068 (reverse)

seq1  TATT-TTTTTTTTTGAGACAGAGTTTCTCTGTATAGTCCTGGTTGTCCTG  49
      |||| |||||||| ||||||||||||||||||| |||||||| |||||||
seq2  TATTATTTTTTTTAGAGACAGAGTTTCTCTGTAAAGTCCTGG-TGTCCTG  49

seq1  GAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAAACTGTCTGCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAAACTGTCTGCC  99

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACCACCCAGCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACCACCCAGCT  149

seq1  TAAATGAACTATTTTTAAGTAAATATCTAAAAGGATTATTTTCTCTTTCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAACTATTTTTAAGTAAATATCTAAAAGGATTATTTTCTCTTTCT  199

seq1  TATCCTGTATCAATTTTTTATTGTAACATTTGAAAAATGACAAACCATAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGTATCAATTTTTTATTGTAACATTTGAAAAATGACAAACCATAC  249

seq1  TGAGTGTAAACTTTTCCCATTTGGCTGATTCAGAGGACGTATCAAGCAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTAAACTTTTCCCATTTGGCTGATTCAGAGGACGTATCAAGCAAC  299

seq1  AGATTTCCTGGATTAAGTTTTAATAAGTTAAAGATAAAAATAGGATTAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCCTGGATTAAGTTTTAATAAGTTAAAGATAAAAATAGGATTAAT  349

seq1  TAATGCTTCCTACTTGTTTGAAGTATTTTCATCATCATGAAGAAGAGATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTTCCTACTTGTTTGAAGTATTTTCATCATCATGAAGAAGAGATG  399

seq1  GGAGTTGCATGCCATTATTCTCAATTAAATAATTAGTCAGATCCACTTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGCATGCCATTATTCTCAATTAAATAATTAGTCAGATCCACTTAG  449

seq1  CATCATCATTACATAGAGAGGTATAATCTTAAATTTAACACAGTCCTGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCATTACATAGAGAGGTATAATCTTAAATTTAACACAGTCCTGAT  499

seq1  TCATTTGGCATCGACAATGAAAGATATCAATAAAAATTAAGAGGTGAGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGGCATCGACAATGAAAGATATCAATAAAAATTAAGAGGTGAGCC  549

seq1  AGATGGCATGTAGGAATTTAGTTTAAGGGGAATCAGGAGACACAAACTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCATGTAGGAATTTAGTTTAAGGGGAATCAGGAGACACAAACTAG  599

seq1  CTTGTCATAAACTTAGGCATTGAAGATCAAATGATATTTGTGGGGTTTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCATAAACTTAGGCATTGAAGATCAAATGATATTTGTGGGGTTTGT  649

seq1  TTTGTTTTGTCTTTATTTTTATCTTTGCAGATTTGCTTTTTAAATTTGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTCTTTATTTTTATCTTTGCAGATTTGCTTTTTAAATTTGAG  699

seq1  AATTTTTTTCCATAAAGGTCTTAGTGCTTTAAATATGAAAATTCTGTGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTCCATAAAGGTCTTAGTGCTTTAAATATGAAAATTCTGTGAC  749

seq1  CCAAGATATGACATATATTGATAAAATCATGGGTGAACTTCATCTTGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATATGACATATATTGATAAAATCATGGGTGAACTTCATCTTGTGT  799

seq1  GGGGGATAATATGCTTTGCTGCATGCAGAGGCAATTGGAGGTTTAATACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGATAATATGCTTTGCTGCATGCAGAGGCAATTGGAGGTTTAATACA  849

seq1  TTTGGTGTTGTGTATCAGTCTTGTTAAATCAGTCATTACAAATTATCTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTTGTGTATCAGTCTTGTTAAATCAGTCATTACAAATTATCTCA  899

seq1  GAAAGGTGCCCGTAATTCAGTGGCAGAGTTTAAGTGGAAACTGGCAAGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTGCCCGTAATTCAGTGGCAGAGTTTAAGTGGAAACTGGCAAGGT  949

seq1  TCACCTAATGAAAGTAACACAGTTTTATTTTGTTGTTGCTGAAAAGAATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTAATGAAAGTAACACAGTTTTATTTTGTTGTTGCTGAAAAGAATT  999

seq1  C  1000
      |
seq2  C  1000