BAC Information

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BAC

Clone NameB6Ng01-097G10
Chromosome17 (Build37)
Map Location 42,478,544 - 42,598,771
singlet/doubletdoublet
Overlap geneLOC627626
Upstream geneLOC627577
Downstream geneOpn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097G10.bB6Ng01-097G10.g
ACCDH907787DH907788
length1,1041,146
definitionDH907787|Mus musculus domesticus DNA, BAC clone: B6Ng01-097G10, 5' end.DH907788|Mus musculus domesticus DNA, BAC clone: B6Ng01-097G10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,478,544 - 42,479,657)(42,597,617 - 42,598,771)
sequence
gaattcagctactattgggaaaataatggacaagaattttactggtgtct
gtaagaagacacagtgaggaaagacagagactctaatctattccttcaca
aaccccttcagttttacaccacacatcttgtctattaaaggcaattttac
tgtggatttttggatctagggtgtaagcctaagaaatttgtttctgcctc
taggtcaagtggcatatcttacttaaatcttatggagtcctatataacta
ttactgtccccataagcttcattcgaacctaccccttacctgaaggcaga
cagcctcaactttacaaatagtcaacatctggaagcacgttttcacttat
gaatattgttatgagctaggtacctgttttgggtgacatttcttagagtc
gcagtacatggaccagcaatcacaagcatttgaactaagagtgattatat
tcttagatttgagatcttattcccatcttgctgttcagatgaacaccttg
tggcaagccagtaatgtaagatgttattaacgacatagcctatgactgag
gaaatacacatacagagaaggtgtgcgtgaggggtcacttggggatcaga
tgagtaagtaagtagactattaatgttccaagtcctcaacttctgagtat
ggaagttaaagggagccatctatcatagtaaaatgaataatttaatactt
gtattagcaagagtgatgtttatcatatgggttttcctctcaggttagca
tttaagacactgctaatattgtgacttaaaaaaaaagaacaattcacttc
aaaaaattaaattttaacataaatattatgggaaatgtaaggatgaacag
agaagttaaagaagtttgtaagggcctctgtgtgtccatctgtgttaaag
ctccattcatatcttcctagaaatggatgtcttcatatgtttatctctct
ggatgctttcttgtagactgtgttctctcacctactctagtatttgtttc
cctgtagaatctggccttagagttatatactgtgataaaacaataactgt
ggcagaagatttattttgtcttacaccttattaataatcatccatgagat
gggc
gaattccatgttaatttcttgaagatggccaggcttgaagacatatctgg
ggaaaagaaatctcatctaaggaactgccttcatcagactgattttttgt
gggagggtttagcctactattagcagagccatttagcacgagcaagtcat
gaggagcaatccagtaagcagcgctactccatggtctctgcttcagttcc
tgcctctaggttcctgccttgagttcctaccctggcttccctagatggac
tgtagcctaaaatatgaagcaaagcctttcctcctcaagttgcttttaat
aatagtgtttatcacagctgtagagagcaagctatgacatgctctccagt
agatgaaaagaacattcatgggcatttagaactgagaaacttcatacgtg
catcagaaaggcactcttcaatttcttgatttgtgcttgttaatgcattt
taaggaaaaacaaaaaagaaaaataagaactggtgaaagcaacagaaaga
ccattgataaaaattcccacagtaaagccagaatgaagactttctttgga
ttttgacatgtgaatctgacattgaaagttctttgcaatgagtttctcag
atctacattagaaacaatgcatatcagcttgagggaaaatactgtgtgga
aaccaaataccaaagactgaatgagaattaggacagacattgccctaaac
cactagtgcaggattttcttgacaagtgcataaaaagggaccgggagtaa
gttaatgctgtaatatttgtgcaatatttgttgtggtcagccatagctgc
atttaagtgtgacatctataagaggagtcactccacagtttaggcttagt
gttttgtttcataaaagttattcttcccatttaaaattctaaagggagaa
aaaaaatcacttggaatcttatttgaggaattgttgggcttttctttagt
ctttcctccttagtaaatacaggagcctagtttggatcttgggctcatgg
cctatatttcgtcctatcttatatagtgggacatggtgatgaagaggatg
taaataggatgcgtactggaagggtttcatttgattttcttccacctttg
gaactagaaagagggtagctcatagaactcagatagaggattcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42478544_42479657
seq2: B6Ng01-097G10.b_43_1146

seq1  GAATTCAGCTACTATTGGGAAAATAATGGACAAGAATTTTACTGGTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTACTATTGGGAAAATAATGGACAAGAATTTTACTGGTGTCT  50

seq1  GTAAGAAGACACAGTGAGGAAAGACAGAGACTCTAATCTATTCCTTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAGACACAGTGAGGAAAGACAGAGACTCTAATCTATTCCTTCACA  100

seq1  AACCCCTTCAGTTTTACACCACACATCTTGTCTATTAAAGGCAATTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTTCAGTTTTACACCACACATCTTGTCTATTAAAGGCAATTTTAC  150

seq1  TGTGGATTTTTGGATCTAGGGTGTAAGCCTAAGAAATTTGTTTCTGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATTTTTGGATCTAGGGTGTAAGCCTAAGAAATTTGTTTCTGCCTC  200

seq1  TAGGTCAAGTGGCATATCTTACTTAAATCTTATGGAGTCCTATATAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAAGTGGCATATCTTACTTAAATCTTATGGAGTCCTATATAACTA  250

seq1  TTACTGTCCCCATAAGCTTCATTCGAACCTACCCCTTACCTGAAGGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTCCCCATAAGCTTCATTCGAACCTACCCCTTACCTGAAGGCAGA  300

seq1  CAGCCTCAACTTTACAAATAGTCAACATCTGGAAGCACGTTTTCACTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCAACTTTACAAATAGTCAACATCTGGAAGCACGTTTTCACTTAT  350

seq1  GAATATTGTTATGAGCTAGGTACCTGTTTTGGGTGACATTTCTTAGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTGTTATGAGCTAGGTACCTGTTTTGGGTGACATTTCTTAGAGTC  400

seq1  GCAGTACATGGACCAGCAATCACAAGCATTTGAACTAAGAGTGATTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTACATGGACCAGCAATCACAAGCATTTGAACTAAGAGTGATTATAT  450

seq1  TCTTAGATTTGAGATCTTATTCCCATCTTGCTGTTCAGATGAACACCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGATTTGAGATCTTATTCCCATCTTGCTGTTCAGATGAACACCTTG  500

seq1  TGGCAAGCCAGTAATGTAAGATGTTATTAACGACATAGCCTATGACTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGCCAGTAATGTAAGATGTTATTAACGACATAGCCTATGACTGAG  550

seq1  GAAATACACATACAGAGAAGGTGTGCGTGAGGGGTCACTTGGGGATCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACACATACAGAGAAGGTGTGCGTGAGGGGTCACTTGGGGATCAGA  600

seq1  TGAGTAAGTAAGTAGACTATTAATGTTCCAAGTCCTCAACTTCTGAGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAGTAAGTAGACTATTAATGTTCCAAGTCCTCAACTTCTGAGTAT  650

seq1  GGAAGTTAAAGGGAGCCATCTATCATAGTAAAATGAATAATTTAATACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTAAAGGGAGCCATCTATCATAGTAAAATGAATAATTTAATACTT  700

seq1  GTATTAGCAAGAGTGATGTTTATCATATGGGTTTTCCTCTCAGGTTAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGCAAGAGTGATGTTTATCATATGGGTTTTCCTCTCAGGTTAGCA  750

seq1  -TTAAGACACTGCTAATATTGTGACTTAAAAAAAAAGAACAATTCACTTC  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGACACTGCTAATATTGTGACTTAAAAAAAAAGAACAATTCACTTC  800

seq1  AAAAAAATTAAATTTTAACATAAATATTATGGGAAAATGTAA-GATGAAC  848
       |||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  -AAAAAATTAAATTTTAACATAAATATTATGGG-AAATGTAAGGATGAAC  848

seq1  AGAGAAGTTAAAGAAGTTTGTAAGGGCCTCTGTGTGTCCATCTGTGTTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTTAAAGAAGTTTGTAAGGGCCTCTGTGTGTCCATCTGTGTTAA  898

seq1  AGCTCCATTCATATCTTCCTAGAAATGGATGTCTTCAATATGTTTATCTC  948
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGCTCCATTCATATCTTCCTAGAAATGGATGTCTTC-ATATGTTTATCTC  947

seq1  TCTGGATGCTTTCTTGTAAGACTGTGTTTCTCTCACCCTACTCTAGTATT  998
      ||||||||||||||||| |||||||| |||||||| ||||||||||||||
seq2  TCTGGATGCTTTCTTGT-AGACTGTG-TTCTCTCA-CCTACTCTAGTATT  994

seq1  TGTTTCCCTGTAGAATCT-GCCTTAGAGTTTATATAACTGTGATAAAACA  1047
      |||||||||||||||||| ||||||||| |||||| ||||||||||||||
seq2  TGTTTCCCTGTAGAATCTGGCCTTAGAG-TTATAT-ACTGTGATAAAACA  1042

seq1  TATAACTTGTGGCAGGAAGAATTTATTTTGTCTTACCACTTA-TAATACA  1096
       ||||| ||||||| |||| ||||||||||||||||  |||| ||||| |
seq2  -ATAAC-TGTGGCA-GAAG-ATTTATTTTGTCTTACACCTTATTAATA-A  1087

seq1  TCATCCATGATGATGGGC  1114
      |||||||||| |||||||
seq2  TCATCCATGA-GATGGGC  1104

seq1: chr17_42597617_42598771
seq2: B6Ng01-097G10.g_69_1214 (reverse)

seq1  CTTGAATCCCTCTTATCTGAAGTTCTATGACTTACACTCTATCTATGTTC  50
      ||||||| |||| |||||| ||||||||||  ||| |||| |||| ||||
seq2  CTTGAAT-CCTC-TATCTG-AGTTCTATGAGCTACCCTCTTTCTA-GTTC  46

seq1  CAAAGGTTGAAGAAAATCAAATGAAACCTTTTCAGTACGCATCCTATTTA  100
      ||||||| |||||||||||||||||||| || ||||||||||||||||||
seq2  CAAAGGTGGAAGAAAATCAAATGAAACCCTTCCAGTACGCATCCTATTTA  96

seq1  CATTCTCTTCATCACATGGTCACACTTAATTATAAGATAGAACAAAATAT  150
      ||| |||||||||||   ||| ||||    |||||||||| || ||||||
seq2  CATCCTCTTCATCACCATGTCCCACT---ATATAAGATAGGACGAAATAT  143

seq1  AAGCCATTGAG-CCAAGATCAAAACTAGGCTTCTGTTATTTACTAAAGAG  199
      | |||| |||| |||||||| |||||||||| ||| |||||||||| |||
seq2  AGGCCA-TGAGCCCAAGATCCAAACTAGGCTCCTG-TATTTACTAAGGAG  191

seq1  GAAAAGACTAAAAGAAAG-CCAACAATTCCTCAAATAAGATT-CAAGTGA  247
      | ||||||||||  |||| ||||||||||||||||||||||| |||||||
seq2  G-AAAGACTAAAGAAAAGCCCAACAATTCCTCAAATAAGATTCCAAGTGA  240

seq1  TTTTTTTTCTCCCTTTAGAATTTTAAATGGGAAGAATAACTTTTATGAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTCCCTTTAGAATTTTAAATGGGAAGAATAACTTTTATGAAA  290

seq1  CAAAACACTAAGCCTAAACTGTGGAGTGACTCCTCTTATAGATGTCACAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACTAAGCCTAAACTGTGGAGTGACTCCTCTTATAGATGTCACAC  340

seq1  CTAAATGCAGCTATGGCTGACCAACAACAAATATTGCACAAATATTACAG  397
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTAAATGCAGCTATGGCTGACC-ACAACAAATATTGCACAAATATTACAG  389

seq1  CATTAACTTACTCCCGGTCCCTTTTTATGCACTTGTCAAGAATATTCCTG  447
      |||||||||||||||||||||||||||||||||||||||||| | |||||
seq2  CATTAACTTACTCCCGGTCCCTTTTTATGCACTTGTCAAGAA-AATCCTG  438

seq1  CACTAGTGGTTTAGGGCAATGTCTGTCCTAATTCTCATTCAGTCTTTGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTGGTTTAGGGCAATGTCTGTCCTAATTCTCATTCAGTCTTTGGT  488

seq1  ATTTGGTTTCCACACAGTATTTTCCCTCAAGCTGATATGCATTGTTTCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTTTCCACACAGTATTTTCCCTCAAGCTGATATGCATTGTTTCTA  538

seq1  ATGTAGATCTGAGAAACTCATTGCAAAGAACTTTCAATGTCAGATTCACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGATCTGAGAAACTCATTGCAAAGAACTTTCAATGTCAGATTCACA  588

seq1  TGTCAAAATCCAAAGAAAGTCTTCATTCTGGCTTTACTGTGGGAATTTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAATCCAAAGAAAGTCTTCATTCTGGCTTTACTGTGGGAATTTTT  638

seq1  ATCAATGGTCTTTCTGTTGCTTTCACCAGTTCTTATTTTTCTTTTTTGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGGTCTTTCTGTTGCTTTCACCAGTTCTTATTTTTCTTTTTTGTT  688

seq1  TTTCCTTAAAATGCATTAACAAGCACAAATCAAGAAATTGAAGAGTGCCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAAAATGCATTAACAAGCACAAATCAAGAAATTGAAGAGTGCCT  738

seq1  TTCTGATGCACGTATGAAGTTTCTCAGTTCTAAATGCCCATGAATGTTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGCACGTATGAAGTTTCTCAGTTCTAAATGCCCATGAATGTTCT  788

seq1  TTTCATCTACTGGAGAGCATGTCATAGCTTGCTCTCTACAGCTGTGATAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTACTGGAGAGCATGTCATAGCTTGCTCTCTACAGCTGTGATAA  838

seq1  ACACTATTATTAAAAGCAACTTGAGGAGGAAAGGCTTTGCTTCATATTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATTATTAAAAGCAACTTGAGGAGGAAAGGCTTTGCTTCATATTTT  888

seq1  AGGCTACAGTCCATCTAGGGAAGCCAGGGTAGGAACTCAAGGCAGGAACC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACAGTCCATCTAGGGAAGCCAGGGTAGGAACTCAAGGCAGGAACC  938

seq1  TAGAGGCAGGAACTGAAGCAGAGACCATGGAGTAGCGCTGCTTACTGGAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCAGGAACTGAAGCAGAGACCATGGAGTAGCGCTGCTTACTGGAT  988

seq1  TGCTCCTCATGACTTGCTCGTGCTAAATGGCTCTGCTAATAGTAGGCTAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTCATGACTTGCTCGTGCTAAATGGCTCTGCTAATAGTAGGCTAA  1038

seq1  ACCCTCCCACAAAAAATCAGTCTGATGAAGGCAGTTCCTTAGATGAGATT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCCACAAAAAATCAGTCTGATGAAGGCAGTTCCTTAGATGAGATT  1088

seq1  TCTTTTCCCCAGATATGTCTTCAAGCCTGGCCATCTTCAAGAAATTAACA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCCCAGATATGTCTTCAAGCCTGGCCATCTTCAAGAAATTAACA  1138

seq1  TGGAATTC  1155
      ||||||||
seq2  TGGAATTC  1146