BAC Information

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BAC

Clone NameB6Ng01-098E11
Chromosome17 (Build37)
Map Location 33,953,652 - 34,082,296
singlet/doubletdoublet
Overlap geneAnkrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46
Upstream gene6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4
Downstream geneB3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098E11.bB6Ng01-098E11.g
ACCDH908414DH908415
length1,1861,000
definitionDH908414|Mus musculus domesticus DNA, BAC clone: B6Ng01-098E11, 5' end.DH908415|Mus musculus domesticus DNA, BAC clone: B6Ng01-098E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,953,652 - 33,954,846)(34,081,288 - 34,082,296)
sequence
gaattccatccgtcactctacagtctactgtcttccatgggctgtttttc
ctttttggaaccttctgctcttgcagctgcgtctgccttatgaagcgctc
aatcttaagttcctgccacaggaaatttttttctgacgtgagagccaaag
ttggctcctgcagtggttctgtaattcaccatgtattagtgccttgaaaa
tcatttgaaatgattgtgtctatttatagctaacaaggggtcaagatatt
gtcttccttattatagtgtcccaagaatataagtatttgtcacatagtgg
gtgcttaaacatggttgcatgcccatcgtgtgcaggtacgcctgcaagcc
tcaggtgtggtcttgagctctggcagcagtacaggtgcaccgcagggaca
agggatgaggaaacatgtttgttcactctctttgggagcttcttggtttg
acccctcttccctctcaaccctcctgttataccacagacctgggcggccc
tcccctgtacccaggccccactggaagtgcccgcagccctagctctccct
attctgtggagacgccctatggcttccacttggacctggacttcctcaaa
tacgtggaggaaatcgagcgtggccctgcctctcgccgaactccaggacc
tcctcatgcacgccgcccgcgcgcgtctcgaacgggcctcgcgggagcgc
ggagcccaggagcttggacttccagcgaatccctggccagtgacgacggc
ggagcctcgggtgcactctctcctggtgcgttcccggggctctcgctacc
tccgctgtcgccacgctccttgtcgcgcaatccgcgcgttgagcacacgc
tcttggagaccagccgacgactggagcaggcgcagctcgggagcgcgcgc
tcagcccggcccgcgcagtcacacgcagtccgcgcgggtccggcgtagca
gcccgccctaaccccgcccttgcctccccggccctgcccagctgcagcta
gtgagggagcaagatggccgcggcgctgcggcgcctgcgtggcccgagga
ccaggcggccgcctctgcccgagctgcagaacagggtccgcgcttgcttt
ctagatagcgccggcttactggcccggcccgtgcagcagaacaagaagta
gaaatcgaggcgctctagcaacctgccagcttcggc
gaattccattatcccacacaggaagctggtgcaggaggcttgctacatgt
tccaggccggcttgaaatatggagcaagacaacactctacccgtacactc
aaactgcgggcatgggtggacgtgagggtaaggttggaatgtctgtttgc
tgagtctttgttcgctggtgtcaggcgttttaatgcagatttcaggtgca
gaactgggacacacgccatctaagatgtcagctcggatacagctgagtga
taggtaggttagggtgggagtctgctgtccctgtgggaggatggacattc
cccaagacctagctcctcccctccaccactcacatggcacccttggcagg
ctaggctctgggctgagctggggacatgcgcatgaacccctgaatgtact
gtcatatggctagagttgagttcaggttggagaaatttctgtgtaaggga
acaggagagaaggcgcttcagggaggagtgacacagcaactgacagaccc
agcaaatgggacaagacaccatgtcacaggatggaggcaccacctgggac
gagctcctagaacttttccatatgcctgcacacaatgtgcacagagccag
acccaggaacccggcacacgggctctctaacacacccacacttgacggca
gctggttggctcaacgtaaggccacactccactggatgccatctgtgctc
ctacaggcaagtgccgtccacctttctgcccagctgtgcccaacaccaca
tccccaaacacgtgacttacgtgcctgtagaatctactgccacagcacgc
accccaccacggtgacacagaatcttcgccagtgcttcttcactgctgga
ctccaaaagacactgtgcctgaaggcaggggacactcagggctaccactg
caaacccagcctgggctcttgaggctttgcctcagttctcaatggcggaa
agacaggacacaagggaagacctccatagcctggctgacggggtcagctc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_33953652_33954846
seq2: B6Ng01-098E11.b_47_1232

seq1  GAATTCCATCCGTCACTCTACAGTCTACTGTCTTCCATGGGCTGTTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCGTCACTCTACAGTCTACTGTCTTCCATGGGCTGTTTTTC  50

seq1  CTTTTTGGAACCTTCTGCTCTTGCAGCTGCGTCTGCCTTATGAAGCGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGGAACCTTCTGCTCTTGCAGCTGCGTCTGCCTTATGAAGCGCTC  100

seq1  AATCTTAAGTTCCTGCCACAGGAAATTTTTTTCTGACGTGAGAGCCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAAGTTCCTGCCACAGGAAATTTTTTTCTGACGTGAGAGCCAAAG  150

seq1  TTGGCTCCTGCAGTGGTTCTGTAATTCACCATGTATTAGTGCCTTGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCCTGCAGTGGTTCTGTAATTCACCATGTATTAGTGCCTTGAAAA  200

seq1  TCATTTGAAATGATTGTGTCTATTTATAGCTAACAAGGGGTCAAGATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGAAATGATTGTGTCTATTTATAGCTAACAAGGGGTCAAGATATT  250

seq1  GTCTTCCTTATTATAGTGTCCCAAGAATATAAGTATTTGTCACATAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTTATTATAGTGTCCCAAGAATATAAGTATTTGTCACATAGTGG  300

seq1  GTGCTTAAACATGGTTGCATGCCCATCGTGTGCAGGTACGCCTGCAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAAACATGGTTGCATGCCCATCGTGTGCAGGTACGCCTGCAAGCC  350

seq1  TCAGGTGTGGTCTTGAGCTCTGGCAGCAGTACAGGTGCACCGCAGGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGTGGTCTTGAGCTCTGGCAGCAGTACAGGTGCACCGCAGGGACA  400

seq1  AGGGATGAGGAAACATGTTTGTTCACTCTCTTTGGGAGCTTCTTGGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGAGGAAACATGTTTGTTCACTCTCTTTGGGAGCTTCTTGGTTTG  450

seq1  ACCCCTCTTCCCTCTCAACCCTCCTGTTATACCACAGACCTGGGCGGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCTTCCCTCTCAACCCTCCTGTTATACCACAGACCTGGGCGGCCC  500

seq1  TCCCCTGTACCCAGGCCCCACTGGAAGTGCCCGCAGCCCTAGCTCTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTACCCAGGCCCCACTGGAAGTGCCCGCAGCCCTAGCTCTCCCT  550

seq1  ATTCTGTGGAGACGCCCTATGGCTTCCACTTGGACCTGGACTTCCTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGGAGACGCCCTATGGCTTCCACTTGGACCTGGACTTCCTCAAA  600

seq1  TACGTGGAGGAAATCGAGCGTGGCCCTGCCTCTCGCCGAACTCCAGGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGGAGGAAATCGAGCGTGGCCCTGCCTCTCGCCGAACTCCAGGACC  650

seq1  TCCTCATGCACGCCGCCCGCGCGCGTCTCGAACGGGCCTCGCGGGAGCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATGCACGCCGCCCGCGCGCGTCTCGAACGGGCCTCGCGGGAGCGC  700

seq1  GGAGCCCAGGAGCTTGGACTTCCAGCGAATCCCTGGCCAGTGACGACGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCAGGAGCTTGGACTTCCAGCGAATCCCTGGCCAGTGACGACGGC  750

seq1  GGAGCCTCGGGTGCACTCTCTCCTGGTGCGTTCCCGGGGCTCTCGCTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTCGGGTGCACTCTCTCCTGGTGCGTTCCCGGGGCTCTCGCTACC  800

seq1  TCCGCTGTCGCCACGCTCCTTGTCGCGCAATCCGCGCGTTGAGCACACGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCTGTCGCCACGCTCCTTGTCGCGCAATCCGCGCGTTGAGCACACGC  850

seq1  TCTTGGAGACCAGCCGACGACTGGAGCAGGCGCAGGCTCGGGAGCGCGCG  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTTGGAGACCAGCCGACGACTGGAGCAGGCGCA-GCTCGGGAGCGCGCG  899

seq1  CTCAGCCCGGCCCGCGCAGTCACACGCAGTCCGCGCGGGTCCGGCCGTAG  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCAGCCCGGCCCGCGCAGTCACACGCAGTCCGCGCGGGTCCGG-CGTAG  948

seq1  CAGCCCCGCCCCTAACCCCGCCCTTGCCTCCCCGGGCCCTGCCCAGCTGC  1000
      ||||||   |||||||||||||||||||||||| ||||||||||||||||
seq2  CAGCCC--GCCCTAACCCCGCCCTTGCCTCCCC-GGCCCTGCCCAGCTGC  995

seq1  AGCTAGTGAGGGAGC-AGATGGCCGCGGCGCTGCGGCGCCTGCGTGAGCT  1049
      ||||||||||||||| |||||||||||||||||||||||||||||| || 
seq2  AGCTAGTGAGGGAGCAAGATGGCCGCGGCGCTGCGGCGCCTGCGTG-GCC  1044

seq1  CGAGGACCAGGCGCGCG-CTCTGCCCGAGCTGCAGGAGCAGGTGCGCGCG  1098
      |||||||||||||  || |||||||||||||||| || |||| |  ||||
seq2  CGAGGACCAGGCGGCCGCCTCTGCCCGAGCTGCA-GAACAGG-GTCCGCG  1092

seq1  CTGCGTGCCGAGAAGGCG-CGGC-TACTGGCCGGGCGCGTGCAGCCAGAA  1146
      ||   |  | |||  ||| |||| |||||||| ||| ||||||| |||||
seq2  CTTGCTTTCTAGATAGCGCCGGCTTACTGGCCCGGCCCGTGCAG-CAGAA  1141

seq1  CAAGAAGTAGAGATCGAGGCGCGCCCAGACAAGCTCGCCCAGCTTCGGC  1195
      ||||||||||| ||||||||||  | || ||| ||   |||||||||||
seq2  CAAGAAGTAGAAATCGAGGCGC-TCTAG-CAACCT--GCCAGCTTCGGC  1186

seq1: chr17_34081288_34082296
seq2: B6Ng01-098E11.g_68_1067 (reverse)

seq1  GAGCTGCACCCCGTCAGCCAGGGCTATGGAGGTCTTCCCTTGTGTCCTGT  50
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGCTG-ACCCCGTCAGCCA-GGCTATGGAGGTCTTCCCTTGTGTCCTGT  48

seq1  CTTTCCGCCATTGAAGAACCTGAGGCTAAGGCCTCAAGAGCCCCAGGCTG  100
      ||||||||||||| |||| ||||||| || |||||||||| |||||||||
seq2  CTTTCCGCCATTG-AGAA-CTGAGGC-AAAGCCTCAAGAG-CCCAGGCTG  94

seq1  GGTTTGCAGTGGTAGCCCTGAGTGTCCCCTGCCTTTCAGGCACAGTGTCT  150
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGTTTGCAGTGGTAGCCCTGAGTGTCCCCTGCC-TTCAGGCACAGTGTCT  143

seq1  TTATGGAGTCCAGCAGTGAAGGAGCCACTGGCGAAGATTCTGTGTCACCG  200
      || |||||||||||||||||| || |||||||||||||||||||||||||
seq2  TT-TGGAGTCCAGCAGTGAAGAAG-CACTGGCGAAGATTCTGTGTCACCG  191

seq1  TGGTGGGGTGCGTGCTGTGGCAGTAGATTCTACAGGCACGTAAGTCACGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGGTGCGTGCTGTGGCAGTAGATTCTACAGGCACGTAAGTCACGT  241

seq1  GTTTGGGGATGTGGTGTTGGGCACAGCTGGGCAGAAAGGTGGACGGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGGATGTGGTGTTGGGCACAGCTGGGCAGAAAGGTGGACGGCACT  291

seq1  TGCCTGTAGGAGCACAGATGGCATCCAGTGGAGTGTGGCCTTACGTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTAGGAGCACAGATGGCATCCAGTGGAGTGTGGCCTTACGTTGAG  341

seq1  CCAACCAGCTGCCGTCAAGTGTGGGTGTGTTAGAGAGCCCGTGTGCCGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAGCTGCCGTCAAGTGTGGGTGTGTTAGAGAGCCCGTGTGCCGGG  391

seq1  TTCCTGGGTCTGGCTCTGTGCACATTGTGTGCAGGCATATGGAAAAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGTCTGGCTCTGTGCACATTGTGTGCAGGCATATGGAAAAGTTC  441

seq1  TAGGAGCTCGTCCCAGGTGGTGCCTCCATCCTGTGACATGGTGTCTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCTCGTCCCAGGTGGTGCCTCCATCCTGTGACATGGTGTCTTGTC  491

seq1  CCATTTGCTGGGTCTGTCAGTTGCTGTGTCACTCCTCCCTGAAGCGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGCTGGGTCTGTCAGTTGCTGTGTCACTCCTCCCTGAAGCGCCTT  541

seq1  CTCTCCTGTTCCCTTACACAGAAATTTCTCCAACCTGAACTCAACTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGTTCCCTTACACAGAAATTTCTCCAACCTGAACTCAACTCTAG  591

seq1  CCATATGACAGTACATTCAGGGGTTCATGCGCATGTCCCCAGCTCAGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGACAGTACATTCAGGGGTTCATGCGCATGTCCCCAGCTCAGCCC  641

seq1  AGAGCCTAGCCTGCCAAGGGTGCCATGTGAGTGGTGGAGGGGAGGAGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTAGCCTGCCAAGGGTGCCATGTGAGTGGTGGAGGGGAGGAGCTA  691

seq1  GGTCTTGGGGAATGTCCATCCTCCCACAGGGACAGCAGACTCCCACCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGGGGAATGTCCATCCTCCCACAGGGACAGCAGACTCCCACCCTA  741

seq1  ACCTACCTATCACTCAGCTGTATCCGAGCTGACATCTTAGATGGCGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCTATCACTCAGCTGTATCCGAGCTGACATCTTAGATGGCGTGTG  791

seq1  TCCCAGTTCTGCACCTGAAATCTGCATTAAAACGCCTGACACCAGCGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTTCTGCACCTGAAATCTGCATTAAAACGCCTGACACCAGCGAAC  841

seq1  AAAGACTCAGCAAACAGACATTCCAACCTTACCCTCACGTCCACCCATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTCAGCAAACAGACATTCCAACCTTACCCTCACGTCCACCCATGC  891

seq1  CCGCAGTTTGAGTGTACGGGTAGAGTGTTGTCTTGCTCCATATTTCAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGTTTGAGTGTACGGGTAGAGTGTTGTCTTGCTCCATATTTCAAGC  941

seq1  CGGCCTGGAACATGTAGCAAGCCTCCTGCACCAGCTTCCTGTGTGGGATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTGGAACATGTAGCAAGCCTCCTGCACCAGCTTCCTGTGTGGGATA  991

seq1  ATGGAATTC  1009
      |||||||||
seq2  ATGGAATTC  1000