BAC Information

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BAC

Clone NameB6Ng01-098I18
Chromosome17 (Build37)
Map Location 29,924,467 - 30,146,318
singlet/doubletdoublet
Overlap geneMdga1, LOC100042885, LOC100042888, Zfand3
Upstream geneBrpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik
Downstream geneBtbd9, EG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098I18.bB6Ng01-098I18.g
ACCDH908607DH908608
length1,018327
definitionDH908607|Mus musculus domesticus DNA, BAC clone: B6Ng01-098I18, 5' end.DH908608|Mus musculus domesticus DNA, BAC clone: B6Ng01-098I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,145,292 - 30,146,318)(29,924,467 - 29,924,793)
sequence
gaattcacagaaatctgtctaccgatcttgttctcccaagtgctgggatt
aatggcatgtgctagtccatcaaactgttcaacagcttcctaaaatattt
atgaaaaaaattgtgcctcagtcaacttttaagtgcatgagcaattttaa
ataaattaatactacttatatatctagacagtgtgaaagtactttcaagc
taagcatagtgttaagtacctacaatcatagcacataaggaatgtaagcc
atctagaccagcctgagctacagtgagttcaaagctagcctgaactatat
aataaaactcttgtctccaaagaaaaggaggggataggagaaaaagaggt
aagtgtattcatattaaagaaatgtactgacaactttatttcaaatatgg
caattatcaataagtgcttttttttgcctgatttcaaaatgtctaaaatg
aaccaagacactgatcatatttcactaaaacttttaagtccaagtcacaa
ggaacagactgttttaatcctagaaggtacagtctctaccacataaagaa
cttccaagttctataaacagagcagtcttcaacaatctccaaggcagcag
gttttcccaataaggagacagtctctataaattacttcaattacccaccc
cagtgacacaatataaaccagagacagtgctagaaactgtgttttgaact
gcatgctaccctttggcattctccttctattgtgcacccacaagaaagag
ctcaaagctctcctatttgccagccttgtgattgctgtcctgaccagaca
tgctcagcagcaatactaaagcctgagtcactgagaaagcaccattctga
aggaactccctttactctcacaatgccagaaaatctgtaagaggatctca
gcaaaggcctgggtgtggccctgctagctcacattaaaaactgcagcttc
cagaatggtagggcctgccacacaacagttcttgggagccttcttttggg
attaacggaaggaaaaga
cagatgcaagcctatggaagttcacctttgctgggggttaaggactcagt
tggtgcctttgttataatagctcatgtacacggacacccacggcaggcca
ctgagggctccctcctagttccccagcttcccttcagacacacatagagg
aggagagtctccaaggcaaccctgcatggcccatgttccccacacctact
caggttcaggagctgggcagataggatgcccaaggaggcatgtctctcca
gctaacaaccaacactgcaatgagagcctaataaggtagaattgcatcct
aggcatgggggtggtggtggtgtatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_30145292_30146318
seq2: B6Ng01-098I18.b_32_1049 (reverse)

seq1  TCTTTTCCTTCCGTAAAAACAAAAAGGAGGCTCCCAAGAACTGTTGTGTG  50
      |||||||||||||| ||  | ||||| |||||||||||||||||||||||
seq2  TCTTTTCCTTCCGTTAATCCCAAAAGAAGGCTCCCAAGAACTGTTGTGTG  50

seq1  GCAGGCAC-AGCACTCTGGAAGCTGCAGGTCTTTAATGTGAGCTAGCCAG  99
      |||||| | | || ||||||||||||| || ||||||||||||||| |||
seq2  GCAGGCCCTACCATTCTGGAAGCTGCA-GTTTTTAATGTGAGCTAG-CAG  98

seq1  GGCCCACACCCAGGCCTTTGCTGAGGATCCTCTCTACAGAATTTTTCTGG  149
      || ||||||||||||||||||||| |||||||| ||||||  ||||||||
seq2  GG-CCACACCCAGGCCTTTGCTGA-GATCCTCT-TACAGA--TTTTCTGG  143

seq1  CATTGTGAGAGTAAAGGGAGTTCCTTCAGAATTGCTGCTTTCTCCAGTGA  199
      ||||||||||||||||||||||||||||||| || |||||||| ||||||
seq2  CATTGTGAGAGTAAAGGGAGTTCCTTCAGAA-TGGTGCTTTCT-CAGTGA  191

seq1  CTCAGGCTTTAGTATTTGCTGCTGAGCATTGTCTGGTCAGGACAGCAATC  249
      |||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  CTCAGGCTTTAGTA-TTGCTGCTGAGCA-TGTCTGGTCAGGACAGCAATC  239

seq1  ACAAGGGCTTGGCAAATAGGAGAGCTTTGAGCTCTTTCTTGTGGGTGCAC  299
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGG--CTGGCAAATAGGAGAGCTTTGAGCTCTTTCTTGTGGGTGCAC  287

seq1  AATAGAAAGGAGAATGCC-AAGGGTAGCATGCAGTTC-AAACACAGTTTC  347
      ||||| |||||||||||| |||||||||||||||||| ||||||||||||
seq2  AATAG-AAGGAGAATGCCAAAGGGTAGCATGCAGTTCAAAACACAGTTTC  336

seq1  TAGCACTGTCTCTGGTTTATATTGTGTCACTGGGGTGGGTAATTGAAGTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTGTCTCTGGTTTATATTGTGTCACTGGGGTGGGTAATTGAAGTA  386

seq1  ATTTATAGAGACTGTCTCCTTATTGGG-AAACCTGCTGCCTTGGAGATTG  446
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATTTATAGAGACTGTCTCCTTATTGGGAAAACCTGCTGCCTTGGAGATTG  436

seq1  TTGAAGACTGCTCTGTTTATAGAACTTGGAAGTTCTTTATGTGGTAGAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGACTGCTCTGTTTATAGAACTTGGAAGTTCTTTATGTGGTAGAGA  486

seq1  CTGTACCTTCTAGGATTAAAACAGTCTGTTCCTTGTGACTTGGACTTAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCTTCTAGGATTAAAACAGTCTGTTCCTTGTGACTTGGACTTAAA  536

seq1  AGTTTTAGTGAAATATGATCAGTGTCTTGGTTCATTTTAGACATTTTGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGTGAAATATGATCAGTGTCTTGGTTCATTTTAGACATTTTGAA  586

seq1  ATCAGGCAAAAAAAAGCACTTATTGATAATTGCCATATTTGAAATAAAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCAAAAAAAAGCACTTATTGATAATTGCCATATTTGAAATAAAGT  636

seq1  TGTCAGTACATTTCTTTAATATGAATACACTTACCTCTTTTTCTCCTATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTACATTTCTTTAATATGAATACACTTACCTCTTTTTCTCCTATC  686

seq1  CCCTCCTTTTCTTTGGAGACAAGAGTTTTATTATATAGTTCAGGCTAGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTTTTCTTTGGAGACAAGAGTTTTATTATATAGTTCAGGCTAGCT  736

seq1  TTGAACTCACTGTAGCTCAGGCTGGTCTAGATGGCTTACATTCCTTATGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCACTGTAGCTCAGGCTGGTCTAGATGGCTTACATTCCTTATGT  786

seq1  GCTATGATTGTAGGTACTTAACACTATGCTTAGCTTGAAAGTACTTTCAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGATTGTAGGTACTTAACACTATGCTTAGCTTGAAAGTACTTTCAC  836

seq1  ACTGTCTAGATATATAAGTAGTATTAATTTATTTAAAATTGCTCATGCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTAGATATATAAGTAGTATTAATTTATTTAAAATTGCTCATGCAC  886

seq1  TTAAAAGTTGACTGAGGCACAATTTTTTTCATAAATATTTTAGGAAGCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTTGACTGAGGCACAATTTTTTTCATAAATATTTTAGGAAGCTG  936

seq1  TTGAACAGTTTGATGGACTAGCACATGCCATTAATCCCAGCACTTGGGAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAGTTTGATGGACTAGCACATGCCATTAATCCCAGCACTTGGGAG  986

seq1  -GCAAGATCGGTAGACAGATTTCTGTGAATTC  1027
        ||||||||||||||||||||||||||||||
seq2  AACAAGATCGGTAGACAGATTTCTGTGAATTC  1018

seq1: chr17_29924467_29924793
seq2: B6Ng01-098I18.g_74_400

seq1  CAGATGCAAGCCTATGGAAGTTCACCTTTGCTGGGGGTTAAGGACTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCAAGCCTATGGAAGTTCACCTTTGCTGGGGGTTAAGGACTCAGT  50

seq1  TGGTGCCTTTGTTATAATAGCTCATGTACACGGACACCCACGGCAGGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCTTTGTTATAATAGCTCATGTACACGGACACCCACGGCAGGCCA  100

seq1  CTGAGGGCTCCCTCCTAGTTCCCCAGCTTCCCTTCAGACACACATAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGCTCCCTCCTAGTTCCCCAGCTTCCCTTCAGACACACATAGAGG  150

seq1  AGGAGAGTCTCCAAGGCAACCCTGCATGGCCCATGTTCCCCACACCTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGTCTCCAAGGCAACCCTGCATGGCCCATGTTCCCCACACCTACT  200

seq1  CAGGTTCAGGAGCTGGGCAGATAGGATGCCCAAGGAGGCATGTCTCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCAGGAGCTGGGCAGATAGGATGCCCAAGGAGGCATGTCTCTCCA  250

seq1  GCTAACAACCAACACTGCAATGAGAGCCTAATAAGGTAGAATTGCATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACAACCAACACTGCAATGAGAGCCTAATAAGGTAGAATTGCATCCT  300

seq1  AGGCATGGGGGTGGTGGTGGTGTATGT  327
      |||||||||||||||||||||||||||
seq2  AGGCATGGGGGTGGTGGTGGTGTATGT  327