BAC Information

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BAC

Clone NameB6Ng01-098N22
Chromosome17 (Build37)
Map Location 52,974,174 - 53,077,791
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098N22.bB6Ng01-098N22.g
ACCDH908825DH908826
length1,0471,104
definitionDH908825|Mus musculus domesticus DNA, BAC clone: B6Ng01-098N22, 5' end.DH908826|Mus musculus domesticus DNA, BAC clone: B6Ng01-098N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,974,174 - 52,975,223)(53,076,670 - 53,077,791)
sequence
gaattctttctgatctcttccttcaatactcaagcagagaccgcatatac
aggaagaaagcctgaatcggtcataaagtttgactcactaaacaaatctt
atgataccaaaccccctttagggatcgtcactttagatttctaaaaggaa
attggctggagaatttggtgtagaaatgcaaatatatatatttctctttc
tgtgatctctaactctgtctctctttataattttattatacattttgcta
gctaactgaaggctgatcagacaaatgggaatgctggaattagaggaagg
gaattcagtcacttcaataacataaccccaatacaaaatgagattcctga
gttgattaacacttgtactttctattctttcttctttcgagcttcttatc
atgcctcctcacaaggaagaaagtgttccatttgcactagcaatcatttt
tacattcagtgacggacatttttaaaaactgtcaagtactttcttataac
cagagagatgtttaggaagaccacttttgattgggcatatgtttgttgtt
attgttgttttgttgtgtttttttattatggtaaccaatgttagcctgta
aaaacaaatgtactaaatattagttcaaatgaaacaaattcccttatcag
ttgatagctcttcatatacatcataccctttgtgaagactttaatgactg
gtttccaagagtagccaagtgatcagagtttcaagttcagatattattgg
cttcgaggtgaacatacacattctctccaacttctccatgcagacgtaca
tgtgtgttaattgcatataatctaagaattttttgtttctgtcttttttt
ttttttgagttgggagaattgagggtactgccctcggatgagagctaccc
agaaaacctagcacataatatcaattggcatgatatgggatagttacctg
ggcttttaaagagtttcaagagtgaatttgtctagataagtaccaatatt
gacagtgaagtgacttcaaggaacgatttaccaagctccacataatc
gaattcaatctcaggatgaaaaattatttattaacaccatgtcctttctc
caggagactgaaaggtttgggcaacttgaagctcttcctacaatagactt
tatatcttctagaaaacagctatcttctagctatcattaatgggtattca
gagaaactgaaaacaagcaccaaaaccaaccaaacaaactagggttgtag
aaattgggaatgtaaaagtgtcacaaaacagatatgaaaaatgcagttca
gctgcaatttagatttattcccagctccagcagcaggaggattctcttgg
gaagtccgtgtagccctatccctgccccatcacctgtgtggtttcacttc
tctcaaggctcatgcctagcaatgaactgcacccataatatttgtcagaa
tgatcccttagtaacctcctgttctccagtttctctgtaccctgattgtc
tggaaccaatccaagcagctagcagccatcttgggtgctggtggttaagt
ctccttggccccaccctctatgtcacctgcctaaatactttgctccagca
agcagccacagagtcatccatttgagtcccccctggcagattgtcttaag
acttaactcaagcatcacaactgtcttcactctagagaaggtcccccagt
aagcaccaaattgaaatgaccccagcctcctcactgagtgtctgagagag
taagcttcaaatacctcctatgtgacttgaaatcagcaaagagaggctaa
cagaaatacagagctaaactcccactcaacactggtgaaacagaatctga
accaagcttcaccctagatgtttaagtcctagcacaaaaataaaagaaat
atgaaaacccaagaaaatatctctctccaaagaccagtaatcctataaga
attttctccatcaagaactaccaagatgaatctgagtagtatttacaagt
actactataatatgttaattgagagcttaaagaggaaatgataacatctg
atgaaatgaaagagacagagggaaaaccctctttatggagttcagaaaac
accacagcatggactgatggagcatgaaaggtggagtcagacttaaatga
tctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_52974174_52975223
seq2: B6Ng01-098N22.b_47_1093

seq1  GAATTCTTTCTGATCTCTTCCTTCAATACTCAAGCAGAGACCGCATATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGATCTCTTCCTTCAATACTCAAGCAGAGACCGCATATAC  50

seq1  AGGAAGAAAGCCTGAATCGGTCATAAAGTTTGACTCACTAAACAAATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAGCCTGAATCGGTCATAAAGTTTGACTCACTAAACAAATCTT  100

seq1  ATGATACCAAACCCCCTTTAGGGATCGTCACTTTAGATTTCTAAAAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACCAAACCCCCTTTAGGGATCGTCACTTTAGATTTCTAAAAGGAA  150

seq1  ATTGGCTGGAGAATTTGGTGTAGAAATGCAAATATATATATTTCTCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTGGAGAATTTGGTGTAGAAATGCAAATATATATATTTCTCTTTC  200

seq1  TGTGATCTCTAACTCTGTCTCTCTTTATAATTTTATTATACATTTTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCTCTAACTCTGTCTCTCTTTATAATTTTATTATACATTTTGCTA  250

seq1  GCTAACTGAAGGCTGATCAGACAAATGGGAATGCTGGAATTAGAGGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTGAAGGCTGATCAGACAAATGGGAATGCTGGAATTAGAGGAAGG  300

seq1  GAATTCAGTCACTTCAATAACATAACCCCAATACAAAATGAGATTCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCACTTCAATAACATAACCCCAATACAAAATGAGATTCCTGA  350

seq1  GTTGATTAACACTTGTACTTTCTATTCTTTCTTCTTTCGAGCTTCTTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTAACACTTGTACTTTCTATTCTTTCTTCTTTCGAGCTTCTTATC  400

seq1  ATGCCTCCTCACAAGGAAGAAAGTGTTCCATTTGCACTAGCAATCATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCCTCACAAGGAAGAAAGTGTTCCATTTGCACTAGCAATCATTTT  450

seq1  TACATTCAGTGACGGACATTTTTAAAAACTGTCAAGTACTTTCTTATAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCAGTGACGGACATTTTTAAAAACTGTCAAGTACTTTCTTATAAC  500

seq1  CAGAGAGATGTTTAGGAAGACCACTTTTGATTGGGCATATGTTTGTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGATGTTTAGGAAGACCACTTTTGATTGGGCATATGTTTGTTGTT  550

seq1  ATTGTTGTTTTGTTGTGTTTTTTTATTATGGTAACCAATGTTAGCCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGTTTTGTTGTGTTTTTTTATTATGGTAACCAATGTTAGCCTGTA  600

seq1  AAAACAAATGTACTAAATATTAGTTCAAATGAAACAAATTCCCTTATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATGTACTAAATATTAGTTCAAATGAAACAAATTCCCTTATCAG  650

seq1  TTGATAGCTCTTCATATACATCATACCCTTTGTGAAGACTTTAATGACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGCTCTTCATATACATCATACCCTTTGTGAAGACTTTAATGACTG  700

seq1  GTTTCCAAGAGTAGCCAAGTGATCAGAGTTTCAAGTTCAGATATTATTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAAGAGTAGCCAAGTGATCAGAGTTTCAAGTTCAGATATTATTGG  750

seq1  CTTCGAGGTGAACATACACATTCTCTCCAACTTCTCCATGCAGACGTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGAGGTGAACATACACATTCTCTCCAACTTCTCCATGCAGACGTACA  800

seq1  TGTGTGTTAATTGCATATAATCTAAGAATTTTTTGTTTCTGTC-TTTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTGTGTTAATTGCATATAATCTAAGAATTTTTTGTTTCTGTCTTTTTTT  850

seq1  TTTTTTGAGTTGGGAG-ATTGAGGGTACTGCCATCGGGATGAGAGCTACC  898
      |||||||||||||||| ||||||||||||||| || ||||||||||||||
seq2  TTTTTTGAGTTGGGAGAATTGAGGGTACTGCCCTC-GGATGAGAGCTACC  899

seq1  CAGAAAACCTAGCACATAATATCAATTGGCATGATATGGGATAGTTACCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACCTAGCACATAATATCAATTGGCATGATATGGGATAGTTACCT  949

seq1  GGGCTTTCTAAAGAAGTTTCAAGAGTGAATTTGTCTAGATAAGTACCAAT  998
      ||||||| ||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGCTTT-TAAAG-AGTTTCAAGAGTGAATTTGTCTAGATAAGTACCAAT  997

seq1  AATGACAGTGAAGTGACTTCAAGGAAGGATTTTACAAAGCTCCAAAATAA  1048
      | |||||||||||||||||||||||| || ||||| ||||||| | ||||
seq2  ATTGACAGTGAAGTGACTTCAAGGAACGA-TTTACCAAGCTCC-ACATAA  1045

seq1  TC  1050
      ||
seq2  TC  1047

seq1: chr17_53076670_53077791
seq2: B6Ng01-098N22.g_67_1170 (reverse)

seq1  GAGACTCATTTTTAAAGTCCTGACTC--ACTTTCATTGCTCCATTCAGTC  48
      |||| ||||||   |||| |||||||   |||||| ||||||| ||||||
seq2  GAGA-TCATTT---AAGT-CTGACTCCACCTTTCA-TGCTCCA-TCAGTC  43

seq1  CATGCTGT-GTGTTTTCCTTGAACTTCCATTAAAGAGGGTTTTTCCCTCT  97
      |||||||| ||||||||  ||||| |||| ||||||||| ||||||||| 
seq2  CATGCTGTGGTGTTTTC--TGAAC-TCCA-TAAAGAGGG-TTTTCCCTC-  87

seq1  TGTCCTCTTTCATTTCATTCAGATGTTTATTCATTTCCTCTTTAAGCTTC  147
      ||| ||||||||||||| |||||||||   ||||||||||||||||| ||
seq2  TGT-CTCTTTCATTTCA-TCAGATGTT--ATCATTTCCTCTTTAAGC-TC  132

seq1  TCAATTAACATATTTATAGTAGTACTTGTAAATACTTACTTCAGATTCAT  197
      |||||||||||| |||||||||||||||||||||| ||| ||||||||||
seq2  TCAATTAACATA-TTATAGTAGTACTTGTAAATAC-TAC-TCAGATTCAT  179

seq1  CTTGGTAGTTCTTGATGGAGAAAATTCTTATAGGATTACTGGTCTTTGGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAGTTCTTGATGGAGAAAATTCTTATAGGATTACTGGTCTTTGGA  229

seq1  GAGAGATATTTTCTTGGGTTTTCATATTTCTTTTATTTTTGTGCTAGGAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATATTTTCTTGGGTTTTCATATTTCTTTTATTTTTGTGCTAGGAC  279

seq1  TTAAACATCTAGGGTGAAGCTTGGTTCAGATTCTGTTTCACCAGTGTTGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATCTAGGGTGAAGCTTGGTTCAGATTCTGTTTCACCAGTGTTGA  329

seq1  GTGGGAGTTTAGCTCTGTATTTCTGTTAGCCTCTCTTTGCTGATTTCAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGTTTAGCTCTGTATTTCTGTTAGCCTCTCTTTGCTGATTTCAAG  379

seq1  TCACATAGGAGGTATTTGAAGCTTACTCTCTCAGACACTCAGTGAGGAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAGGAGGTATTTGAAGCTTACTCTCTCAGACACTCAGTGAGGAGG  429

seq1  CTGGGGTCATTTCAATTTGGTGCTTACTGGGGGACCTTCTCTAGAGTGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTCATTTCAATTTGGTGCTTACTGGGGGACCTTCTCTAGAGTGAA  479

seq1  GACAGTTGTGATGCTTGAGTTAAGTCTTAAGACAATCTGCCAGGGGGGAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTGTGATGCTTGAGTTAAGTCTTAAGACAATCTGCCAGGGGGGAC  529

seq1  TCAAATGGATGACTCTGTGGCTGCTTGCTGGAGCAAAGTATTTAGGCAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGGATGACTCTGTGGCTGCTTGCTGGAGCAAAGTATTTAGGCAGG  579

seq1  TGACATAGAGGGTGGGGCCAAGGAGACTTAACCACCAGCACCCAAGATGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAGAGGGTGGGGCCAAGGAGACTTAACCACCAGCACCCAAGATGG  629

seq1  CTGCTAGCTGCTTGGATTGGTTCCAGACAATCAGGGTACAGAGAAACTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGCTGCTTGGATTGGTTCCAGACAATCAGGGTACAGAGAAACTGG  679

seq1  AGAACAGGAGGTTACTAAGGGATCATTCTGACAAATATTATGGGTGCAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGGAGGTTACTAAGGGATCATTCTGACAAATATTATGGGTGCAGT  729

seq1  TCATTGCTAGGCATGAGCCTTGAGAGAAGTGAAACCACACAGGTGATGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCTAGGCATGAGCCTTGAGAGAAGTGAAACCACACAGGTGATGGG  779

seq1  GCAGGGATAGGGCTACACGGACTTCCCAAGAGAATCCTCCTGCTGCTGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGATAGGGCTACACGGACTTCCCAAGAGAATCCTCCTGCTGCTGGA  829

seq1  GCTGGGAATAAATCTAAATTGCAGCTGAACTGCATTTTTCATATCTGTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAATAAATCTAAATTGCAGCTGAACTGCATTTTTCATATCTGTTT  879

seq1  TGTGACACTTTTACATTCCCAATTTCTACAACCCTAGTTTGTTTGGTTGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACACTTTTACATTCCCAATTTCTACAACCCTAGTTTGTTTGGTTGG  929

seq1  TTTTGGTGCTTGTTTTCAGTTTCTCTGAATACCCATTAATGATAGCTAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTGCTTGTTTTCAGTTTCTCTGAATACCCATTAATGATAGCTAGA  979

seq1  AGATAGCTGTTTTCTAGAAGATATAAAGTCTATTGTAGGAAGAGCTTCAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCTGTTTTCTAGAAGATATAAAGTCTATTGTAGGAAGAGCTTCAA  1029

seq1  GTTGCCCAAACCTTTCAGTCTCCTGGAGAAAGGACATGGTGTTAATAAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCCAAACCTTTCAGTCTCCTGGAGAAAGGACATGGTGTTAATAAAT  1079

seq1  AATTTTTCATCCTGAGATTGAATTC  1122
      |||||||||||||||||||||||||
seq2  AATTTTTCATCCTGAGATTGAATTC  1104