BAC Information

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BAC

Clone NameB6Ng01-099K23
Chromosome17 (Build37)
Map Location 52,460,477 - 52,611,463
singlet/doubletdoublet
Overlap geneLOC672987, EG328839
Upstream geneLOC100043451, LOC100043452, Satb1, EG628919
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099K23.bB6Ng01-099K23.g
ACCDH909412DH909413
length1,0051,071
definitionDH909412|Mus musculus domesticus DNA, BAC clone: B6Ng01-099K23, 5' end.DH909413|Mus musculus domesticus DNA, BAC clone: B6Ng01-099K23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,460,477 - 52,461,494)(52,610,390 - 52,611,463)
sequence
gaattctttcataagggttttgaaagattttttttccagaatgtctgcat
cactgaacatctaaatttaacctgtgtatcacagttgaggaaccctgagt
gtcataaagggccaacccatgtttgagagcttaattggatactccgataa
tccaaatgcagttttctccatcacctgggagccggttagactttgaatct
atgacgaaactctgccatttaatagcaggtttgtgtataccttggttttg
gagaaccctgaaggtataagatcttgctggaatacacagagagtagccta
aagaagcctgccagttttgggtcattcaactgcacacatggactattaag
aactctggttggtcacaatttcaagaacaataacagatgtaaagcatcta
ttttttttttctttttgagcaggtagagttaccagagtgtgctcaagtta
atcacccatttaattataaacaaataaataaacataataattgtaccttg
agctaattcaacaagtagaggcacttgtgtggaaggcctatgacctgagt
tttgcccccgtattaggattgactcaactttggagagttgttttctgatc
ttcacatactctccctgccatgagtaccagcccacataggcacaaaacaa
ataaataaatttacatttaaaacattaaacccaaaaatggatgtgctttt
cttgaagtattcaactgtagagataagtgagtggctggaggcccacacca
ggagagggagtctacacctcacattgacaaggtagccaggaaccagaagt
tgtatagcccagatacctaggctagaaccaaatagacttaaaaaagtttg
tggggatcaatgaaataattctttatattattattattattattattata
tattatataggtattttcctcgttacattttcaatgctatccaaggtccc
tcatacccaccccccccaacccctacccccactcctcgtttggcctggcg
ttccc
gaattctgttaatacaagcagtgtcctcattggtattagggctaatgttt
cttcctttgtatgaaaggaagagagacgtgcagttggggaaagagaaata
tctcacaactcccttggctggaatcttaacattaccgagaagatgcacga
ggaaaacattctctccgtgtcttaaagcaggcttcccttgatgctggtct
ttcataatcaatgtgggctggtgatacggtgacattaaacgctcttttga
accctgtatcttttgaacagtggcctttcttggctactaacaaggatggt
aggcttcctataagattctcttcgtgtgcagtgctgggcccattgagctg
gtggtctgatgctggctttgccactggtttcctattgccggaggaactta
accttcctgtgatgcacttctctcatttacataatgggctgattataatt
gccaacctcacaggattgttgtacgaattaactaatgtttgtaaagtgct
ccgaggtccatagatgaaaggtgctatataagcctattattatgtcatca
aaaacgaaattccaataagattagactttcatttaaatttccattaattt
tgtcataattctagattaattcgcactggttttctagagcaaataaataa
ataagtgggagaaatggtgatatattaaaatacgaagcattcacatggaa
aggaaattagctagaaaaatgttaacacttagatgtgatttttaaattat
tatcctttaatgagccctgatcatgtaatcaatattatgtaaaacctaga
tatggtctctgagtttacaaactaattacaaacctgactgattaaatagc
taacatttcctatttcaagtgtgtagaaatgaatgctatataaaggccta
taactcactcatttttaaattaagtctcttattataggaaataacttgaa
aacttttagaaagattattagtatgcgaagtattacgtaagctcgtgaat
aagtacatatgtaagtttgtgaagagtgtctttacatgtcacggagcaaa
tggcctccttctgtctggcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_52460477_52461494
seq2: B6Ng01-099K23.b_50_1054

seq1  GAATTCTTTCATAAGGGTTTTGAAAGATTTTTTTTCCAGAATGTCTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATAAGGGTTTTGAAAGATTTTTTTTCCAGAATGTCTGCAT  50

seq1  CACTGAACATCTAAATTTAACCTGTGTATCACAGTTGAGGAACCCTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACATCTAAATTTAACCTGTGTATCACAGTTGAGGAACCCTGAGT  100

seq1  GTCATAAAGGGCCAACCCATGTTTGAGAGCTTAATTGGATACTCCGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAAAGGGCCAACCCATGTTTGAGAGCTTAATTGGATACTCCGATAA  150

seq1  TCCAAATGCAGTTTTCTCCATCACCTGGGAGCCGGTTAGACTTTGAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGCAGTTTTCTCCATCACCTGGGAGCCGGTTAGACTTTGAATCT  200

seq1  ATGACGAAACTCTGCCATTTAATAGCAGGTTTGTGTATACCTTGGTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGAAACTCTGCCATTTAATAGCAGGTTTGTGTATACCTTGGTTTTG  250

seq1  GAGAACCCTGAAGGTATAAGATCTTGCTGGAATACACAGAGAGTAGCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCCTGAAGGTATAAGATCTTGCTGGAATACACAGAGAGTAGCCTA  300

seq1  AAGAAGCCTGCCAGTTTTGGGTCATTCAACTGCACACATGGACTATTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCCTGCCAGTTTTGGGTCATTCAACTGCACACATGGACTATTAAG  350

seq1  AACTCTGGTTGGTCACAATTTCAAGAACAATAACAGATGTAAAGCATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGGTTGGTCACAATTTCAAGAACAATAACAGATGTAAAGCATCTA  400

seq1  TTTTTTTTTTCTTTTTGAGCAGGTAGAGTTACCAGAGTGTGCTCAAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCTTTTTGAGCAGGTAGAGTTACCAGAGTGTGCTCAAGTTA  450

seq1  ATCACCCATTTAATTATAAACAAATAAATAAACATAATAATTGTACCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCATTTAATTATAAACAAATAAATAAACATAATAATTGTACCTTG  500

seq1  AGCTAATTCAACAAGTAGAGGCACTTGTGTGGAAGGCCTATGACCTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATTCAACAAGTAGAGGCACTTGTGTGGAAGGCCTATGACCTGAGT  550

seq1  TTTGCCCCCGTATTAGGATTGACTCAACTTTGGAGAGTTGTTTTCTGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCCCGTATTAGGATTGACTCAACTTTGGAGAGTTGTTTTCTGATC  600

seq1  TTCACATACTCTCCCTGCCATGAGTACCAGCCCACATAGGCACAAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATACTCTCCCTGCCATGAGTACCAGCCCACATAGGCACAAAACAA  650

seq1  ATAAATAAATTTACATTTAAAACATTAAACCCAAAAATGGATGTGCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATTTACATTTAAAACATTAAACCCAAAAATGGATGTGCTTTT  700

seq1  CTTGAAGTATTCAACTGTAGAGATAAGTGAGTGGCTGGAGGCCCACACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGTATTCAACTGTAGAGATAAGTGAGTGGCTGGAGGCCCACACCA  750

seq1  GGAGAGGGAGTCTACACCTCACATTGACAAGGTAGCCAGGAACCAGAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGAGTCTACACCTCACATTGACAAGGTAGCCAGGAACCAGAAGT  800

seq1  TGTATAGCCCAGATACCTAGGCTAGAACCAAATAGACTTAAAAAAGTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGCCCAGATACCTAGGCTAGAACCAAATAGACTTAAAAAAGTTTG  850

seq1  TGGGGATCAATGAAATAATTCTTTATTATTATTATTATTATTATTATTAT  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGGGGATCAATGAAATAATTCTTTA-TATTATTATTATTATTATTATTAT  899

seq1  TATTATTATTATTAGGTATTTTCCTCGTTTACATTTTCAATGCTATCCCA  950
         ||||||   ||||||||||||||| ||||||||||||||||||||  
seq2  --ATATTAT--ATAGGTATTTTCCTCG-TTACATTTTCAATGCTATCC--  942

seq1  AAGGTCCCTCATACCCACCCCCCCCAACCCCCTACCCCCCACTCCCCCTT  1000
      ||||||||||||||||||||||||||| |||||| |||||||||| | ||
seq2  AAGGTCCCTCATACCCACCCCCCCCAA-CCCCTA-CCCCCACTCCTCGTT  990

seq1  TTTGGCCCTGGCGTTCCC  1018
      |   | ||||||||||||
seq2  T---GGCCTGGCGTTCCC  1005

seq1: chr17_52610390_52611463
seq2: B6Ng01-099K23.g_69_1139 (reverse)

seq1  AGGCCAGGACAGAAGGAGGCCATCTGCTCCGTGACATTGTAAAGACACTC  50
      |||||| |||||||||||||||| |||||||||||| |||||||||||||
seq2  AGGCCA-GACAGAAGGAGGCCATTTGCTCCGTGACA-TGTAAAGACACTC  48

seq1  TTCACAAACTTACATATGTACTTATCCACGAGCTTACGT-ATACTTCGCA  99
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  TTCACAAACTTACATATGTACTTATTCACGAGCTTACGTAATACTTCGCA  98

seq1  TACTTATAATCTTTCTAAAAGTTTTCAAGTTATTTCCTATAATAAGAGAC  149
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATAATCTTTCTAAAAGTTTTCAAGTTATTTCCTATAATAAGAGAC  148

seq1  TTAATTTAAAAATGAGTTGAGTTATAGGCCTTTATATAGCATTCATTTCT  199
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTAATTTAAAAATGAG-TGAGTTATAGGCCTTTATATAGCATTCATTTCT  197

seq1  ACACACTTGAAATAGGAAATGTTAGCTATTTAATCAGTCAGGTTTGTAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACACACTTGAAATAGGAAATGTTAGCTATTTAATCAGTCAGGTTTGTAA-  246

seq1  TTAGTTTGTAAACTCAGAGACCATATCTAGGTTTTACATAATATTGATTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTGTAAACTCAGAGACCATATCTAGGTTTTACATAATATTGATTA  296

seq1  CATGATCAGGGCTCATTAAAGGATAATAATTTAAAAATCACATCTAAGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCAGGGCTCATTAAAGGATAATAATTTAAAAATCACATCTAAGTG  346

seq1  TTAACATTTTTCTAGCTAATTTCCTTTCCATGTGAATGCTTCGTATTTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTTTTCTAGCTAATTTCCTTTCCATGTGAATGCTTCGTATTTTA  396

seq1  ATATATCACCATTTCTCCCACTTATTTATTTATTTGCTCTAGAAAACCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCACCATTTCTCCCACTTATTTATTTATTTGCTCTAGAAAACCAG  446

seq1  TGCGAATTAATCTAGAATTATGACAAAATTAATGGAAATTTAAATGAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAATTAATCTAGAATTATGACAAAATTAATGGAAATTTAAATGAAAG  496

seq1  TCTAATCTTATTGGAATTTCGTTTTTGATGACATAATAATAGGCTTATAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCTTATTGGAATTTCGTTTTTGATGACATAATAATAGGCTTATAT  546

seq1  AGCACCTTTCATCTATGGACCTCGGAGCACTTTACAAACATTAGTTAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTTTCATCTATGGACCTCGGAGCACTTTACAAACATTAGTTAATT  596

seq1  CGTACAACAATCCTGTGAGGTTGGCAATTATAATCAGCCCATTATGTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACAACAATCCTGTGAGGTTGGCAATTATAATCAGCCCATTATGTAAA  646

seq1  TGAGAGAAGTGCATCACAGGAAGGTTAAGTTCCTCCGGCAATAGGAAACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAAGTGCATCACAGGAAGGTTAAGTTCCTCCGGCAATAGGAAACC  696

seq1  AGTGGCAAAGCCAGCATCAGACCACCAGCTCAATGGGCCCAGCACTGCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAAAGCCAGCATCAGACCACCAGCTCAATGGGCCCAGCACTGCAC  746

seq1  ACGAAGAGAATCTTATAGGAAGCCTACCATCCTTGTTAGTAGCCAAGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGAGAATCTTATAGGAAGCCTACCATCCTTGTTAGTAGCCAAGAAA  796

seq1  GGCCACTGTTCAAAAGATACAGGGTTCAAAAGAGCGTTTAATGTCACCGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTGTTCAAAAGATACAGGGTTCAAAAGAGCGTTTAATGTCACCGT  846

seq1  ATCACCAGCCCACATTGATTATGAAAGACCAGCATCAAGGGAAGCCTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAGCCCACATTGATTATGAAAGACCAGCATCAAGGGAAGCCTGCT  896

seq1  TTAAGACACGGAGAGAATGTTTTCCTCGTGCATCTTCTCGGTAATGTTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACACGGAGAGAATGTTTTCCTCGTGCATCTTCTCGGTAATGTTAA  946

seq1  GATTCCAGCCAAGGGAGTTGTGAGATATTTCTCTTTCCCCAACTGCACGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCAGCCAAGGGAGTTGTGAGATATTTCTCTTTCCCCAACTGCACGT  996

seq1  CTCTCTTCCTTTCATACAAAGGAAGAAACATTAGCCCTAATACCAATGAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCCTTTCATACAAAGGAAGAAACATTAGCCCTAATACCAATGAG  1046

seq1  GACACTGCTTGTATTAACAGAATTC  1074
      |||||||||||||||||||||||||
seq2  GACACTGCTTGTATTAACAGAATTC  1071