BAC Information

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BAC

Clone NameB6Ng01-099N24
Chromosome17 (Build37)
Map Location 84,626,381 - 84,821,070
singlet/doubletdoublet
Overlap geneThada
Upstream geneEG545226, Eml4, Cox7a2l, Kcng3, Mta3, Haao, Zfp36l2
Downstream genePlekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901, 1700106N22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099N24.bB6Ng01-099N24.g
ACCDH909548DH909549
length1,1021,076
definitionDH909548|Mus musculus domesticus DNA, BAC clone: B6Ng01-099N24, 5' end.DH909549|Mus musculus domesticus DNA, BAC clone: B6Ng01-099N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,819,987 - 84,821,070)(84,626,381 - 84,627,454)
sequence
gaattctcccgtgactgcgcgtcagtgaagagactcctgcccactaagag
aagcaccactgtcggacgagctgcctggtcttccacatgtgacgggcttt
tacatgatagcctcataggaagcggagagaagacatcacaggcttgggga
agggtggggtgtaagtaattgctgcgtgctgactcaaactggtctctgtg
aaaacctttattctcagttttgttggcttttaaaccactgtcttagctta
ggaacatttaatccatgaaatgctgccatccagaaagtaatgccatttac
attactataggatttctgtttttctgaacataaaattgcttctttaaaaa
atgttttttttatttaaatatttcagatttgattattttctgggtgtttg
cttgcatagaactatgcatcagaagtgtgcgctgtgtctgtggaggccag
aagagggcaccaaatcccctggaactggaattccagatggttgggagcca
ccatgtagatcctggggactgacccctgggtcctcttaccagagcagcaa
gtgctcttgacagctcgtctagctcttcgtcatattgacttttgagacac
tgccttgttattgagcccaggctggccttccaagtactcgaaccacagca
ggttctaaattctgctttttataaataaaaagtgattgcatatattttaa
tactttcaagaattagttttgtatcagggtgactgggttgtacctaaggt
aaatcttgcacattcttggtgccaagaacatagtcacttagcaaagctac
cttttgctgtacatgctgacaaaacccaccaacctgagaaggtcaccact
ttagattaggtgagtgtgaacctagcccgacttctctctgtaaagctaaa
acagcagcagtcagcctgagtctccttctcaacttccctcttacgttctg
ggtggtccggcttttgttcctcagatcaccctgctttcggaccttggtta
aggctgaactacttcagggagcctccatcagggagatgattataatcacc
ggctaccaggaggctgggaggaccagtgggggagttgtttgctatatgga
ga
gaattctcccatctgtttgcctgtctgctccctttcttcataccttctca
ccacgtgccacactctgccatgcctgcagtcttattaagcagtgaaaagg
ccgtctctgggaagtctcaaaagtgggagaaagaaatgtctttcattcat
gatgtcccccataagagaaccagagagcagtattccaagacacttacagg
gagttgactgtctacctgtaccacatgagcctgctgatttctttgattgc
tctggggcaatggctctatggatctgaactgaggttctcagctgctgatg
ccagctcccgccccatagcttctgtgtttttccatgtccatctattgctc
tgtggatttttctctccctagaaaatgtttccagttttatgggataatac
ttcattcacggtccaagcagctggctatggaggcaaatggtgaagtgtgc
tgtagactggtctctctgggagcttctgctgtctagactgctgccttaga
acctggggtttatagtggtttgctgctgctgtttgtgtcctacgacagca
tctctctgtgtggctgtgctctctctggtcttctggaatgacaggtaggc
ttctgttttgttgtagtgctggggaaggaacttgtgcatgccagacctct
gaattgttttaaaacaatcatgtctcagcatatttctcttacccttccaa
acactgttttcttcttttttacttacttattttaaacatttttgtatctc
ctgtgacctggtttgatctctggtcatgcctttgaatgacagagtcaagg
aatcttgcttgctaatgctaaccccagggttttaccctgggcccagtcct
gggcaatctgatcttgccgccaagcattcacttcttccctttgggttctg
agtcctgcatttgccacagtggccagcagtctctttctcttccatagcct
gttcatctctgaatctccaggatgtggtcttgtgcttggcatccctgtga
tcatgcaggacccagaagcacatgagaagaaggtgctttggtactgcaga
ctgccactgtcctacttactatcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_84819987_84821070
seq2: B6Ng01-099N24.b_49_1150 (reverse)

seq1  TCTCCATATAGCAACAAAGTCCCCAACTTGTCCT-CCTGCCTCCTGTCAG  49
      ||||||||||||||  || ||||| ||| ||||| || ||||||||  ||
seq2  TCTCCATATAGCAAACAACTCCCCCACTGGTCCTCCCAGCCTCCTGGTAG  50

seq1  CC-GTGGTTATAATCATCCTCCTG-TGTGCGCTCCTTG-AGTAG-TCAGC  95
      || ||| |||||||||||  |||| ||   ||||| || ||||| |||||
seq2  CCGGTGATTATAATCATCTCCCTGATGGAGGCTCCCTGAAGTAGTTCAGC  100

seq1  CTTAACCAAGGTCAGAAAGCAGGGTGATCTGA-GAACAAAAGCAGGACC-  143
      ||||||||||||| |||||||||||||||||| |||||||||| ||||| 
seq2  CTTAACCAAGGTCCGAAAGCAGGGTGATCTGAGGAACAAAAGCCGGACCA  150

seq1  CCCAGAACGTAAGAGGG-AGGTGAGAAGGAGACTCAGGCTGACTGCTGCT  192
      ||||||||||||||||| || |||||||||||||||||||||||||||||
seq2  CCCAGAACGTAAGAGGGAAGTTGAGAAGGAGACTCAGGCTGACTGCTGCT  200

seq1  GTTTTAGCTTTACAGAGAGAAGTC-GGCTAGGTTCACACTCACCT-ATCT  240
      |||||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  GTTTTAGCTTTACAGAGAGAAGTCGGGCTAGGTTCACACTCACCTAATCT  250

seq1  -AAGTGGTGACC-TCTCAGGTTGGTGGGTTTTGTCAGCATGTACAGC-AA  287
       ||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  AAAGTGGTGACCTTCTCAGGTTGGTGGGTTTTGTCAGCATGTACAGCAAA  300

seq1  AGGTAGCTTTGCTAAGTGACTATGTTCTTGGCACCAAGAATGTGC-AGAT  336
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGTAGCTTTGCTAAGTGACTATGTTCTTGGCACCAAGAATGTGCAAGAT  350

seq1  TTACCTTAGGTAC-AGCCAGTCACCCTGATAC-AAACTAATTCTTGAAAG  384
      ||||||||||||| | |||||||||||||||| |||||||||||||||||
seq2  TTACCTTAGGTACAACCCAGTCACCCTGATACAAAACTAATTCTTGAAAG  400

seq1  TATT-AAATATATGCAATCACTTTTTATTTAT-AAAAGCAGAATTTAGAA  432
      |||| ||||||||||||||||||||||||||| |||||||||||||||||
seq2  TATTAAAATATATGCAATCACTTTTTATTTATAAAAAGCAGAATTTAGAA  450

seq1  CCTGCTGTGGTTCGAGTACTTGGAAGGCCAGCCTGGGCTCAATAACAAGG  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGTGGTTCGAGTACTTGGAAGGCCAGCCTGGGCTCAATAACAAGG  500

seq1  CAGTGTCTCAAAAGTCAATATGACGAAGAGCTAGACGAGCTGTCAAGAGC  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTCAAAAGTCAATATGACGAAGAGCTAGACGAGCTGTCAAGAGC  550

seq1  ACTTGCTGCTCTGGTAAGAGGACCCAGGGGTCAGTCCCCAGGATCTACAT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTGCTCTGGTAAGAGGACCCAGGGGTCAGTCCCCAGGATCTACAT  600

seq1  GGTGGCTCCCAACCATCTGGAATTCCAGTTCCAGGGGATTTGGTGCCCTC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCCCAACCATCTGGAATTCCAGTTCCAGGGGATTTGGTGCCCTC  650

seq1  TTCTGGCCTCCACAGACACAGCGCACACTTCTGATGCATAGTTCTATGCA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCCTCCACAGACACAGCGCACACTTCTGATGCATAGTTCTATGCA  700

seq1  AGCAAACACCCAGAAAATAATCAAATCTGAAATATTTAAATAAAAAAAAC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACACCCAGAAAATAATCAAATCTGAAATATTTAAATAAAAAAAAC  750

seq1  ATTTTTTAAAGAAGCAATTTTATGTTCAGAAAAACAGAAATCCTATAGTA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAAGAAGCAATTTTATGTTCAGAAAAACAGAAATCCTATAGTA  800

seq1  ATGTAAATGGCATTACTTTCTGGATGGCAGCATTTCATGGATTAAATGTT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATGGCATTACTTTCTGGATGGCAGCATTTCATGGATTAAATGTT  850

seq1  CCTAAGCTAAGACAGTGGTTTAAAAGCCAACAAAACTGAGAATAAAGGTT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGCTAAGACAGTGGTTTAAAAGCCAACAAAACTGAGAATAAAGGTT  900

seq1  TTCACAGAGACCAGTTTGAGTCAGCACGCAGCAATTACTTACACCCCACC  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGAGACCAGTTTGAGTCAGCACGCAGCAATTACTTACACCCCACC  950

seq1  CTTCCCCAAGCCTGTGATGTCTTCTCTCCGCTTCCTATGAGGCTATCATG  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCAAGCCTGTGATGTCTTCTCTCCGCTTCCTATGAGGCTATCATG  1000

seq1  TAAAAGCCCGTCACATGTGGAAGACCAGGCAGCTCGTCCGACAGTGGTGC  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCCCGTCACATGTGGAAGACCAGGCAGCTCGTCCGACAGTGGTGC  1050

seq1  TTCTCTTAGTGGGCAGGAGTCTCTTCACTGACGCGCAGTCACGGGAGAAT  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTAGTGGGCAGGAGTCTCTTCACTGACGCGCAGTCACGGGAGAAT  1100

seq1  TC  1084
      ||
seq2  TC  1102

seq1: chr17_84626381_84627454
seq2: B6Ng01-099N24.g_69_1144

seq1  GAATTCTCCCATCTGTTTGCCTGTCTGCTCCCTTTCTTCATACCTTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCATCTGTTTGCCTGTCTGCTCCCTTTCTTCATACCTTCTCA  50

seq1  CCACGTGCCACACTCTGCCATGCCTGCAGTCTTATTAAGCAGTGAAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGCCACACTCTGCCATGCCTGCAGTCTTATTAAGCAGTGAAAAGG  100

seq1  CCGTCTCTGGGAAGTCTCAAAAGTGGGAGAAAGAAATGTCTTTCATTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTCTGGGAAGTCTCAAAAGTGGGAGAAAGAAATGTCTTTCATTCAT  150

seq1  GATGTCCCCCATAAGAGAACCAGAGAGCAGTATTCCAAGACACTTACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCCCCATAAGAGAACCAGAGAGCAGTATTCCAAGACACTTACAGG  200

seq1  GAGTTGACTGTCTACCTGTACCACATGAGCCTGCTGATTTCTTTGATTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGACTGTCTACCTGTACCACATGAGCCTGCTGATTTCTTTGATTGC  250

seq1  TCTGGGGCAATGGCTCTATGGATCTGAACTGAGGTTCTCAGCTGCTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGCAATGGCTCTATGGATCTGAACTGAGGTTCTCAGCTGCTGATG  300

seq1  CCAGCTCCCGCCCCATAGCTTCTGTGTTTTTCCATGTCCATCTATTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCCGCCCCATAGCTTCTGTGTTTTTCCATGTCCATCTATTGCTC  350

seq1  TGTGGATTTTTCTCTCCCTAGAAAATGTTTCCAGTTTTATGGGATAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATTTTTCTCTCCCTAGAAAATGTTTCCAGTTTTATGGGATAATAC  400

seq1  TTCATTCACGGTCCAAGCAGCTGGCTATGGAGGCAAATGGTGAAGTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCACGGTCCAAGCAGCTGGCTATGGAGGCAAATGGTGAAGTGTGC  450

seq1  TGTAGACTGGTCTCTCTGGGAGCTTCTGCTGTCTAGACTGCTGCCTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACTGGTCTCTCTGGGAGCTTCTGCTGTCTAGACTGCTGCCTTAGA  500

seq1  ACCTGGGGTTTATAGTGGTTTGCTGCTGCTGTTTGTGTCCTACGACAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGGTTTATAGTGGTTTGCTGCTGCTGTTTGTGTCCTACGACAGCA  550

seq1  TCTCTCTGTGTGGCTGTGCTCTCTCTGGTCTTCTGGAATGACAGGTAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTGTGGCTGTGCTCTCTCTGGTCTTCTGGAATGACAGGTAGGC  600

seq1  TTCTGTTTTGTTGTAGTGCTGGGGAAGGAACTTGTGCATGCCAGACCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTGTTGTAGTGCTGGGGAAGGAACTTGTGCATGCCAGACCTCT  650

seq1  GAATTGTTTTAAAACAATCATGTCTCAGCATATTTCTCTTACCCTTCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTTTTAAAACAATCATGTCTCAGCATATTTCTCTTACCCTTCCAA  700

seq1  ACACTGTTTTCTTCTTTTTTACTTACTTATTTTAAACATTTTTGTATCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTTTTCTTCTTTTTTACTTACTTATTTTAAACATTTTTGTATCTC  750

seq1  CTGTGACCTAGGTTTGATCTCTGGTCATGCCTTTGAATGACAGAGTCAAG  800
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACCT-GGTTTGATCTCTGGTCATGCCTTTGAATGACAGAGTCAAG  799

seq1  GAATCTTGCTTGCTAATGCTAACCCCAGGGTTTTACCCT-GGCCCAGTCT  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  GAATCTTGCTTGCTAATGCTAACCCCAGGGTTTTACCCTGGGCCCAGTCC  849

seq1  TGGGCAATCTGATCTTGCCGCCAAGCATTCACTTCTTCCCCTTGGGTTCT  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGGGCAATCTGATCTTGCCGCCAAGCATTCACTTCTTCCCTTTGGGTTCT  899

seq1  GAGTCCTGCCATTTGCCACAGTGGCCCAGCAGTCTCTTTCTC-TCCATAG  948
      |||||||| ||||||||||||||| ||||||||||||||||| |||||||
seq2  GAGTCCTG-CATTTGCCACAGTGG-CCAGCAGTCTCTTTCTCTTCCATAG  947

seq1  CCTGTGCATCTCTGAATCTCCAGGATGT-GTCTTGGTGC-TGGCATCCCT  996
      ||||| |||||||||||||||||||||| ||||| |||| ||||||||||
seq2  CCTGTTCATCTCTGAATCTCCAGGATGTGGTCTT-GTGCTTGGCATCCCT  996

seq1  GTGATCATGCAGGACCCAGGAGCACAATGAGAAG-AGGTGCTT--GTACT  1043
      ||||||||||||||||||| ||||| |||||||| ||||||||  |||||
seq2  GTGATCATGCAGGACCCAGAAGCAC-ATGAGAAGAAGGTGCTTTGGTACT  1045

seq1  GCAGACTGGCCACTGT-CTACTTACTATCCTG  1074
      ||||||| |||||||| |||||||||||||||
seq2  GCAGACT-GCCACTGTCCTACTTACTATCCTG  1076