BAC Information

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BAC

Clone NameB6Ng01-099P23
Chromosome17 (Build37)6 (Build37)
Map Location 93,452,596 - 93,452,864123,920,733 - 123,921,799
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG640442, LOC627395, LOC676141, LOC668877, LOC100043746, LOC100043747, LOC100043748, LOC100043907
Downstream geneAdcyap1, LOC676157, LOC627503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099P23.bB6Ng01-099P23.g
ACCDH909629DH909630
length1,0051,071
definitionDH909629|Mus musculus domesticus DNA, BAC clone: B6Ng01-099P23, 5' end.DH909630|Mus musculus domesticus DNA, BAC clone: B6Ng01-099P23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,452,596 - 93,452,864)(123,920,733 - 123,921,799)
sequence
gaattcatgaacatgtaaggcaaatgaatgaaactagaaaatatcctgag
tgaggtaacccagtcacaaaagaacacacatgttatgcactcactgataa
gtggatattaacccaaaaccttggaatgcccaagatacgattcacagacc
acatgaagttcaagaagaaggaataccaaagtgtgggtgcttcagtcctg
tttagaatgaggaatacaaaaaaatcacaggcacaaatatggagacaaac
tgtgtagcagagactgaaggaaaggccatccagagagtgccccacctggc
aatccatcccatatacagtcatcaaacttagacactattgtatatgccaa
gaagtacatactgttaggagcctgatataactgtctcctagatactttgc
cagagccagacaaatacagaggcagatgctaacagacaaccattggacta
agcatgggatccccaatggagtagttagagaaaggactgagggagctgaa
tgggttcaccaccccacaggaataacaacaaaatcaatcaaccagacccc
ccagagctcccagggactaaaccactaaccaaggagtacacatggaggga
cccatggctctatctgcatatttagcagaggatgttcttgtattctccca
atggccatgggagaattgaccattggttctgagaagactcgatgccccag
tgtagaggaatgcatgggcaagaaggcaagagtgatggggggagggcaag
gggagagggcacacccttatagaagcagaagcaggagggagctcaagaaa
ggggatatcatttgaaatgtaaataaagaaaatatccaattaaaaaaaga
acaacagggggctggtgagatggctcagtgggtaagagcacccaactgct
tctttccgaaaggtccagagttcaagtcccagaaaccacatgggtggctc
acaaccatccgcaacaagatctgactccctcttctagagtggtctgaaga
cagct
gaattctatcagtgatttatctgtctctaccctgctatgttaggttacag
gcacacacaaccatgtctgacttgttatgggaatgctgagaattctaatg
caggcccttatgcttgcagagcaagcacttccaacccacagagctactac
ctcagcctcatgattaaatatatatcagactccacagttatcatctaatg
ttgagatcaacccctagacagcaagacagtgaactaaatcctccctccat
aaactccctgagccaaacctcctcctacctaatttcagttttttgccact
gtgaccttccattgtgatgccttcctcctgaggcagcctcaagcaggcct
gttgacttctctgcagactctgtgaggagctgtgactccccattctcagc
cccccacaggaagtcagtgttagatgatcacttctctcctgaaatggcag
cctgccacagccctctgagtgacaaagtatagctcttctgctttgccagc
ccatctccagctgacacctggattggaggccagaaagaagcctggatttg
tcctgtcagcaggacaacaggtctctctaagtcagactcttgcttatctt
ttggatgtaatttgacacacttcaaatatataaatatatatatatatatt
ttaaaataatggtttaaaagtagttcattcagatttttaggtacatgtag
aattaatattaattttaaataaaacattatttaaattatgttttattaat
tagtttcatgggattcatgaacccattatcagaatttactgatataaaaa
aattgtactgtcatgtgtcatgctttaaattgcttacttttttgcattta
ataaatattgaatatttcattatgctactgtttccttcctcaaagtattc
atgtttacttcattttgtgattccttcttttctatttccttttccttctc
tctaaccactactatctccaaatatgtaacatgtattgaggggtcagtat
tcaattatcatgattttggatccaataagtgaaatgttcactagacatct
aaactgaagaatgcttgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_93452596_93452864
seq2: B6Ng01-099P23.b_95_437 (reverse)

seq1  AGGAGACAGCTATATCAGGCTCCTGTCGCCAGCCTTTTGTTGGCATCTGC  50
      ||||||||| ||||||||||||||  |   |     || ||||||| | |
seq2  AGGAGACAGTTATATCAGGCTCCTAACAGTATGTACTTCTTGGCATATAC  50

seq1  CATATTGTCTGGGTTTGGTGGTTGTTTATTGGATGGATACCCAAATGCGT  100
       ||| |||||  ||||| ||  ||| ||| ||||||||  |||  || | 
seq2  AATAGTGTCTAAGTTTGATGACTGTATATGGGATGGATTGCCAGGTGGGG  100

seq1  CA--GTCTGGATGGCCATACCTTCAGGCTCTGCTCTGAACTTTGTCTCTG  148
      ||   ||||||||||| | ||||||| |||||||    | ||||||||  
seq2  CACTCTCTGGATGGCCTTTCCTTCAGTCTCTGCTACACAGTTTGTCTCCA  150

seq1  TAACTCCTTCTGTGAGTATTTTG--TCCCTC-TTCTAAGAAGGA------  189
      ||  |    |||||| | |||||  | |||| ||||||  ||||      
seq2  TATTTGTGCCTGTGATTTTTTTGTATTCCTCATTCTAAACAGGACTGAAG  200

seq1  --------------------------------TTCA--------------  193
                                      ||||              
seq2  CACCCACACTTTGGTATTCCTTCTTCTTGAACTTCATGTGGTCTGTGAAT  250

seq1  --------GAGCA---------TCTAGGCTAATATCCACTTATCAGTGAG  226
              | |||         | | || |||||||||||||||||||||
seq2  CGTATCTTGGGCATTCCAAGGTTTTGGGTTAATATCCACTTATCAGTGAG  300

seq1  TGCATATCATGTGTGTTCTTTTGTGACTGTGTTATCTCACTCA  269
      |||||| |||||||||||||||||||||| |||| ||||||||
seq2  TGCATAACATGTGTGTTCTTTTGTGACTGGGTTACCTCACTCA  343

seq1: chr6_123920733_123921799
seq2: B6Ng01-099P23.g_68_1138 (reverse)

seq1  CCCACAAGCAT--CTCAGTTTAGATGTCTAGTGAACATTTCACTTATTGG  48
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  CCCACAAGCATTCTTCAGTTTAGATGTCTAGTGAACATTTCACTTATTGG  50

seq1  ATCCAAAATCATGATAATTGAATACTGA-CCCTCAATACATGTTACATAT  97
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATCCAAAATCATGATAATTGAATACTGACCCCTCAATACATGTTACATAT  100

seq1  TTGGAAGATAGTAGTGGTTAGAGAGAAGGAAAAGG-AATAGAAAAGAAGG  146
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGG-AGATAGTAGTGGTTAGAGAGAAGGAAAAGGAAATAGAAAAGAAGG  149

seq1  AATCACAAAATGAAGTAAACATGAATACTTTGAGGAAGGAAACAGTAGCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAAAATGAAGTAAACATGAATACTTTGAGGAAGGAAACAGTAGCA  199

seq1  TAATGAAATATTCAATATTTATTAAATGCAAAAAAGTAAGCAATTTAAAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAATATTCAATATTTATTAAATGCAAAAAAGTAAGCAATTTAAAG  249

seq1  CATGACACATGACAGTACAA-TTTTTTATATCAGTAAATTCTGATAATGG  295
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATGACACATGACAGTACAATTTTTTTATATCAGTAAATTCTGATAATGG  299

seq1  GTTCATGAATCCCATGAAACTAATTAATAAAACATAATTTAAATAATGTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGAATCCCATGAAACTAATTAATAAAACATAATTTAAATAATGTT  349

seq1  TTATTTAAAATTAATATTAATTCTACATGTACCTAAAAATCTGAATGAAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAAATTAATATTAATTCTACATGTACCTAAAAATCTGAATGAAC  399

seq1  TACTTTTAAACCATTATTTTAAAATATATATATATATATTTATATATTTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTAAACCATTATTTTAAAATATATATATATATATTTATATATTTG  449

seq1  AAGTGTGTCAAATTACATCCAAAAGATAAGCAAGAGTCTGACTTAGAGAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTCAAATTACATCCAAAAGATAAGCAAGAGTCTGACTTAGAGAG  499

seq1  ACCTGTTGTCCTGCTGACAGGACAAATCCAGGCTTCTTTCTGGCCTCCAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTGTCCTGCTGACAGGACAAATCCAGGCTTCTTTCTGGCCTCCAA  549

seq1  TCCAGGTGTCAGCTGGAGATGGGCTGGCAAAGCAGAAGAGCTATACTTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTGTCAGCTGGAGATGGGCTGGCAAAGCAGAAGAGCTATACTTTG  599

seq1  TCACTCAGAGGGCTGTGGCAGGCTGCCATTTCAGGAGAGAAGTGATCATC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAGAGGGCTGTGGCAGGCTGCCATTTCAGGAGAGAAGTGATCATC  649

seq1  TAACACTGACTTCCTGTGGGGGGCTGAGAATGGGGAGTCACAGCTCCTCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTGACTTCCTGTGGGGGGCTGAGAATGGGGAGTCACAGCTCCTCA  699

seq1  CAGAGTCTGCAGAGAAGTCAACAGGCCTGCTTGAGGCTGCCTCAGGAGGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCTGCAGAGAAGTCAACAGGCCTGCTTGAGGCTGCCTCAGGAGGA  749

seq1  AGGCATCACAATGGAAGGTCACAGTGGCAAAAAACTGAAATTAGGTAGGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCACAATGGAAGGTCACAGTGGCAAAAAACTGAAATTAGGTAGGA  799

seq1  GGAGGTTTGGCTCAGGGAGTTTATGGAGGGAGGATTTAGTTCACTGTCTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTTGGCTCAGGGAGTTTATGGAGGGAGGATTTAGTTCACTGTCTT  849

seq1  GCTGTCTAGGGGTTGATCTCAACATTAGATGATAACTGTGGAGTCTGATA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTAGGGGTTGATCTCAACATTAGATGATAACTGTGGAGTCTGATA  899

seq1  TATATTTAATCATGAGGCTGAGGTAGTAGCTCTGTGGGTTGGAAGTGCTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTAATCATGAGGCTGAGGTAGTAGCTCTGTGGGTTGGAAGTGCTT  949

seq1  GCTCTGCAAGCATAAGGGCCTGCATTAGAATTCTCAGCATTCCCATAACA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCAAGCATAAGGGCCTGCATTAGAATTCTCAGCATTCCCATAACA  999

seq1  AGTCAGACATGGTTGTGTGTGCCTGTAACCTAACATAGCAGGGTAGAGAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGACATGGTTGTGTGTGCCTGTAACCTAACATAGCAGGGTAGAGAC  1049

seq1  AGATAAATCACTGATAGAATTC  1067
      ||||||||||||||||||||||
seq2  AGATAAATCACTGATAGAATTC  1071