BAC Information

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BAC

Clone NameB6Ng01-100A08
Chromosome17 (Build37)
Map Location 60,159,786 - 60,160,974
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043537, LOC100043542
Downstream geneLOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100A08.bB6Ng01-100A08.g
ACCDH909645DH909646
length1,2681,191
definitionDH909645|Mus musculus domesticus DNA, BAC clone: B6Ng01-100A08, 5' end.DH909646|Mus musculus domesticus DNA, BAC clone: B6Ng01-100A08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttatgtattttggatattacttcagaggcccaggagaatgaat
ggaaataggtagctggggagtagggggcaggggaacctctagaaaatctc
agagacttgggatgggaaaagctcacaggaatcaatggggatgaccttag
ccaaaatgcccaacagtgggagaatacaacctgaagaaatcacctccaat
atatagaaagcgccccagtggagggatggggtcaccaacctactttcaat
ttttttccatccagaattgttcttgtccaaaagaaatatagggacaaaaa
tggagcagacgtgaagaaaagaccatccagttacctgtccaatttgggat
ccatcctatgagcagttaccaaaatttgacattattaatgactccatgtt
gtgcttgcagatagaagcctagcatggctgttttctgagaagctaagtga
gaaagatacagatacttacagccaaccattggactgaggtcagggatcct
tagagaagagttaagggaaagactataagagatggaggggattgcaaccc
cttgggaagaacaacagcattaattaacctggacccctcagagctctcag
agattaagtcaccagccaaagagcatatatggactgctctgtggccctct
gacacatgtgttgcagagaacttccttgtctggccttagtggaagatgat
gtgcctaatcctgtagagatttgatgcccatcatccttccatatcctcct
tcccttgggcaccccttcctggttcctcctccaagagattttcacctaaa
atatgatagaacaactggtaatgaattcactgctcatagcaaagaaaaag
taaaacaagataatatatagaaaaaacattgtttcagaccttgaaaagta
ggcactgaagcactgtttcctctgaggaaaaacagctgaaattctacaat
gaacccagctatcttgctggagcatataggaattttgatagttaagaaaa
aacaatacagaacatgcgacctttgtgctcatgcaggtcaaaggactgat
ggtgtgagaagctcagcacaggaaggagcggagtacccgacagtagttaa
gaagtcttaattgaaaaaaggaaaagccggaaaaaaaaaaccttgacgaa
aaatatccaacaaattgggccatgaaatacctggacctgatgctagccta
tgttcatttctcttcactcccagtgtagaagacatggtccggctgggtaa
ccttaaaaaagattttga
gaattcttcatcacatgtcctttcacaagcttgctttaacaaaacatcct
tccatctgtgtcagtttcagtgacacattcctttacaagtcttcctttgt
attttacctttgtccacttcagaaaaaccctctttcatgcgtttgaccta
gaaaaacaccattgaacacagctaactttctaaggaacccttaagtttcc
actacacatacacacaaaatttacataaaatttcagaatgcaagggaggg
cttgaaggtctaggttcctagtacctcagactaaaagtgcctgatacatc
ttcccatcttacaatacagcagctacttgaaatctttcactatctagtca
ccaaaatatcacccatccttgagaactgtcaggagaagatgaccattgaa
ctgtgatatgatttttactcactaaaatgaattaatagtttctcatcaag
gtggctgttaatttcttatctgaaaagttgactcttttttaatttggctc
tagtttggaagaatgtttatgggtcactcgtatagttatggccattctct
aactatttctgaaattcatttgagtttcaacaatctactctcataatgga
aactcatacgtgaaaaccttataaacgacttcatagtttcaagaggacaa
aactgaggacaggtactctaacaggattccctgtggtttgtgcaaattcc
cttagtgagattcaccaagttacaggcagaagcaagtactgatcaaatat
ctgatgacatatacacgatttcatttccattttataattacccagataat
ttctctagtagaagagttacagacaaggagtactacattgttatcatgca
taatacagaaagaaaaaaaatattcacactgtcctaagtttcaatagttc
cattagtaaagttacatgccttatcatatttatatataaatgtgtatata
ttctactaaataaaaagatgccttttttctctatactgaattgaggaatt
catgtgagagccataattatatatggtaattttttgcaaattgtatccac
attcccctcagaaaaaaataaaatatatgtactagtctattaataaattt
atcatttcatatatgggtgactaagcaaatatgtgcatatatcattttac
actcttccatttcgaccattacctatagaagggaaagatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_60159786_60160974
seq2: B6Ng01-100A08.g_66_1256

seq1  GAATTCTTCATCACATGTCCTTTCACAAGCTTGCTTTAACAAAACATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATCACATGTCCTTTCACAAGCTTGCTTTAACAAAACATCCT  50

seq1  TCCATCTGTGTCAGTTTCAGTGACACATTCCTTTACAAGTCTTCCTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTGTGTCAGTTTCAGTGACACATTCCTTTACAAGTCTTCCTTTGT  100

seq1  ATTTTACCTTTGTCCACTTCAGAAAAACCCTCTTTCATGCGTTTGACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACCTTTGTCCACTTCAGAAAAACCCTCTTTCATGCGTTTGACCTA  150

seq1  GAAAAACACCATTGAACACAGCTAACTTTCTAAGGAACCCTTAAGTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACACCATTGAACACAGCTAACTTTCTAAGGAACCCTTAAGTTTCC  200

seq1  ACTACACATACACACAAAATTTACATAAAATTTCAGAATGCAAGGGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACATACACACAAAATTTACATAAAATTTCAGAATGCAAGGGAGGG  250

seq1  CTTGAAGGTCTAGGTTCCTAGTACCTCAGACTAAAAGTGCCTGATACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGTCTAGGTTCCTAGTACCTCAGACTAAAAGTGCCTGATACATC  300

seq1  TTCCCATCTTACAATACAGCAGCTACTTGAAATCTTTCACTATCTAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATCTTACAATACAGCAGCTACTTGAAATCTTTCACTATCTAGTCA  350

seq1  CCAAAATATCACCCATCCTTGAGAACTGTCAGGAGAAGATGACCATTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATATCACCCATCCTTGAGAACTGTCAGGAGAAGATGACCATTGAA  400

seq1  CTGTGATATGATTTTTACTCACTAAAATGAATTAATAGTTTCTCATCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATATGATTTTTACTCACTAAAATGAATTAATAGTTTCTCATCAAG  450

seq1  GTGGCTGTTAATTTCTTATCTGAAAAGTTGACTCTTTTTTAATTTGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTTAATTTCTTATCTGAAAAGTTGACTCTTTTTTAATTTGGCTC  500

seq1  TAGTTTGGAAGAATGTTTATGGGTCACTCGTATAGTTATGGCCATTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGGAAGAATGTTTATGGGTCACTCGTATAGTTATGGCCATTCTCT  550

seq1  AACTATTTCTGAAATTCATTTGAGTTTCAACAATCTACTCTCATAATGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTCTGAAATTCATTTGAGTTTCAACAATCTACTCTCATAATGGA  600

seq1  AACTCATACGTGAAAACCTTATAAACGACTTCATAGTTTCAAGAGGACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATACGTGAAAACCTTATAAACGACTTCATAGTTTCAAGAGGACAA  650

seq1  AACTGAGGACAGGTACTCTAACAGGATTCCCTGTGGTTTGTGCAAATTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGACAGGTACTCTAACAGGATTCCCTGTGGTTTGTGCAAATTCC  700

seq1  CTTAGTGAGATTCACCAAGTTACAGGCAGAAGCAAGTACTGATCAAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGAGATTCACCAAGTTACAGGCAGAAGCAAGTACTGATCAAATAT  750

seq1  CTGATGACATATACACGATTTCATTTCCATTTTATAATTACCCAGATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGACATATACACGATTTCATTTCCATTTTATAATTACCCAGATAAT  800

seq1  TTCTCTAGTAGAAGAGTTACAGACAAGGAGTACTACATTGTTATCATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGTAGAAGAGTTACAGACAAGGAGTACTACATTGTTATCATGCA  850

seq1  TAATACAGAAAGAAAAAAAATATTCACACTGTCCTAAGTTTCAATAGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAGAAAGAAAAAAAATATTCACACTGTCCTAAGTTTCAATAGTTC  900

seq1  CATTAGTAAAGTTACATGCCTTATCATATTTTATATATAAATGTGTATAT  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CATTAGTAAAGTTACATGCCTTATCATA-TTTATATATAAATGTGTATAT  949

seq1  AATTCTACTAAATAAAAAGATGCC-TTTTTCTCTATACTGAATTGAGGAA  999
       ||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  -ATTCTACTAAATAAAAAGATGCCTTTTTTCTCTATACTGAATTGAGGAA  998

seq1  TTCATGTGAGAGCCATAATTATATATGTAATTTTTTTGCAAATTGTAT-C  1048
      |||||||||||||||||||||||||||  | ||||||||||||||||| |
seq2  TTCATGTGAGAGCCATAATTATATATGGTAATTTTTTGCAAATTGTATCC  1048

seq1  ACATT-CACTCAG-AAAAAATAAAATATATGTACTAGTCTATTAATAAAT  1096
      ||||| | ||||| ||||||||||||||||||||||||||||||||||||
seq2  ACATTCCCCTCAGAAAAAAATAAAATATATGTACTAGTCTATTAATAAAT  1098

seq1  TAATCA-TTCATA-ATATGTGACTAAAGCAATATGTGCATTATATTCATT  1144
      | |||| |||||| ||  ||||||||   |||||||||| |||||   ||
seq2  TTATCATTTCATATATGGGTGACTAAGCAAATATGTGCA-TATATCATTT  1147

seq1  TACA-TCTTTCAATATTCAGACATATACATAGA-AAGGGAAAGATGC  1189
      |||| |||| |   |||  |||   ||| || | |||||||||||||
seq2  TACACTCTTCC---ATTTCGACCATTACCTATAGAAGGGAAAGATGC  1191