BAC Information

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BAC

Clone NameB6Ng01-101K02
Chromosome17 (Build37)13 (Build37)
Map Location 34,513,821 - 34,514,691112,666,151 - 112,666,198
singlet/doubletsingletsinglet
Overlap geneLOC100038862
Upstream geneZfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2
Downstream geneLOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101K02.bB6Ng01-101K02.g
ACCDH910755DH910756
length873560
definitionDH910755|Mus musculus domesticus DNA, BAC clone: B6Ng01-101K02, 5' end.DH910756|Mus musculus domesticus DNA, BAC clone: B6Ng01-101K02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(34,513,821 - 34,514,691)(112,666,151 - 112,666,198)
sequence
gaattcaccatgtaaccaaggctctacacatacggccagaagtcaatcat
tgtgggaggggtagaagcattcttggctttattctctcaatctgttagct
gtgtgagtgacctccaatctgaccaccagacctgagcgcttctccctggc
tctgtgggaggcagcttatggtgagaagtatcttaaagtggctttcaagt
tcctatcagcttgtggctcagcccagtgcaaagtcccttgggctttaatt
acttccacccttaaataagagctgaagatggctgcagctttctcctagac
tcctccaggagaaactctaaagccagagcctgggggcagcattgtgtgtc
caccttgccactgagaacatctacggaaattggacactctggccccagca
tccacacgcttgactgttggccacagtaacacaggtgtggatggtcccca
gagccagggtccaggagtgcactgaggatccctggggcttcaaggaaccc
acagctctgtccagacggtgagtgagggtttgtggtttctgagggaggtg
tgggcctgaagaagggtgaattgaagtcatgaggatatagtgagaaatgg
ttccttttttggggggaaagtaggtaaatgaattttaaaaaaagagtaaa
ttagaagaatgaaaatagactgaatgtgggagtggtctactttcttgtat
gacttcactgccctacattggactcagagaacccagcttcaagatccccc
ttgggaccatgaactcacagaaaggcgagagaaaatgggaacttggcagc
ttttccatgtccacggggaaattgttggtcttctgaattaagatgggaca
tgaaaggccttggggaagggcta
gaattccagcaagggcaggctattttgaaagaaagactccacatttgtgt
tcacgaaaggagaataggcttggaccccttccagagtaagagtatagatc
agatgtgataggggagaccccttgaaacctatttaagatcaagaaaacca
agcaggacagaacattcatgtcattgttcacatgacatgaatgaagactt
attacaattggttattgagaaaattactcataaaaaagctgtctttcacc
tgctcaaacaaggaacaaaattcatccttaactcatctgtgcactctacg
caatccatatgaatatcttaatgctactaaaattttggttgtgtgattca
tatattgcagaatgcacagctctgacaagattcatctgctgggatgctca
actgacctgctgttccagtgccctgcttcctgttgctgtccagagacttg
cttcaaaaacagctttaaggctctatgccccagtgtaagggaatgtcagg
gccaggaagcaggagtgggtggcttggtgagaaggaggaggaaggaagga
atgggagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_34513821_34514691
seq2: B6Ng01-101K02.b_45_917

seq1  GAATTCACCATGTAACCAAGGCTCTACACATACGGCCAGAAGTCAATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATGTAACCAAGGCTCTACACATACGGCCAGAAGTCAATCAT  50

seq1  TGTGGGAGGGGTAGAAGCATTCTTGGCTTTATTCTCTCAATCTGTTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAGGGGTAGAAGCATTCTTGGCTTTATTCTCTCAATCTGTTAGCT  100

seq1  GTGTGAGTGACCTCCAATCTGACCACCAGACCTGAGCGCTTCTCCCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTGACCTCCAATCTGACCACCAGACCTGAGCGCTTCTCCCTGGC  150

seq1  TCTGTGGGAGGCAGCTTATGGTGAGAAGTATCTTAAAGTGGCTTTCAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGAGGCAGCTTATGGTGAGAAGTATCTTAAAGTGGCTTTCAAGT  200

seq1  TCCTATCAGCTTGTGGCTCAGCCCAGTGCAAAGTCCCTTGGGCTTTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATCAGCTTGTGGCTCAGCCCAGTGCAAAGTCCCTTGGGCTTTAATT  250

seq1  ACTTCCACCCTTAAATAAGAGCTGAAGATGGCTGCAGCTTTCTCCTAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACCCTTAAATAAGAGCTGAAGATGGCTGCAGCTTTCTCCTAGAC  300

seq1  TCCTCCAGGAGAAACTCTAAAGCCAGAGCCTGGGGGCAGCATTGTGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAGGAGAAACTCTAAAGCCAGAGCCTGGGGGCAGCATTGTGTGTC  350

seq1  CACCTTGCCACTGAGAACATCTACGGAAATTGGACACTCTGGCCCCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGCCACTGAGAACATCTACGGAAATTGGACACTCTGGCCCCAGCA  400

seq1  TCCACACGCTTGACTGTTGGCCACAGTAACACAGGTGTGGATGGTCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACGCTTGACTGTTGGCCACAGTAACACAGGTGTGGATGGTCCCCA  450

seq1  GAGCCAGGGTCCAGGAGTGCACTGAGGATCCCTGGGGCTTCAAGGAACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGGTCCAGGAGTGCACTGAGGATCCCTGGGGCTTCAAGGAACCC  500

seq1  ACAGCTCTGTCCAGACGGTGAGTGAGGGTTTGTGGTTTCTGAGGGAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTGTCCAGACGGTGAGTGAGGGTTTGTGGTTTCTGAGGGAGGTG  550

seq1  TGGGCCTGAAGAAGGGTGAATTGAAGTCATGAGGATATAGTGAGAAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTGAAGAAGGGTGAATTGAAGTCATGAGGATATAGTGAGAAATGG  600

seq1  TTCCTTTTTTGGGGGGAAAGTAGGTAAATGAATTTTAAAAAAAGAGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTTGGGGGGAAAGTAGGTAAATGAATTTTAAAAAAAGAGTAAA  650

seq1  TTAGAAGAATGAAAATAGACTGAATGTGGGAGTGGTCTACTTTCTTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGAATGAAAATAGACTGAATGTGGGAGTGGTCTACTTTCTTGTAT  700

seq1  GACTTCACTGCCCTACATTGGACTCAGAGAACCCAGCTCCAAGATCCCCC  750
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GACTTCACTGCCCTACATTGGACTCAGAGAACCCAGCTTCAAGATCCCCC  750

seq1  TTGGGACCATGAACTCACAGAAAGGCGAGAGAAAATGGGAACTTGGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACCATGAACTCACAGAAAGGCGAGAGAAAATGGGAACTTGGCAGC  800

seq1  -TTTCCATGTCCACGGGGAAATTGTTGGTCTTCTGAATAAAGAGGGGACA  849
       ||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  TTTTCCATGTCCACGGGGAAATTGTTGGTCTTCTGAATTAAGATGGGACA  850

seq1  TGAAAGGCCCTGGGG-AGGGCTA  871
      ||||||||| ||||| |||||||
seq2  TGAAAGGCCTTGGGGAAGGGCTA  873

seq1: chr13_112666151_112666198
seq2: B6Ng01-101K02.g_535_590 (reverse)

seq1  CCACCCACTCCTGCTTCCTGGCCCTGGCAT--------ACTGGGGCATAG  42
      |||||||||||||||||||||||||| |||        ||||||||||||
seq2  CCACCCACTCCTGCTTCCTGGCCCTGACATTCCCTTACACTGGGGCATAG  50

seq1  AACCTT  48
      | ||||
seq2  AGCCTT  56