BAC Information

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BAC

Clone NameB6Ng01-101M11
Chromosome17 (Build37)
Map Location 28,777,936 - 28,903,086
singlet/doubletdoublet
Overlap geneSlc26a8, Mapk14, LOC100043318
Upstream genePacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1
Downstream geneMapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101M11.bB6Ng01-101M11.g
ACCDH910857DH910858
length678966
definitionDH910857|Mus musculus domesticus DNA, BAC clone: B6Ng01-101M11, 5' end.DH910858|Mus musculus domesticus DNA, BAC clone: B6Ng01-101M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,902,409 - 28,903,086)(28,777,936 - 28,778,904)
sequence
gaattcccagctttggtacatccctctgtgtgactttagaccaaagtccc
agcacatccacctgtgtgtccttgtaaaacgaggtgacacaaaggcgaag
gtagaagttccttccctgtgaggttgtgtccagacaaacgtacctttccc
tcgtgcatttgaaaatactttaaattttatttattttattggttatttta
tttatttacatttcaaatgttgtaccccctttcctggtttcccctctgca
aaccccctatctcatctcccctcgcccctattttaaattttttttttttt
ttgagacagggtttctctgtgtagccctggctgtcctggaactcactctg
tagaccaggctggtcttaaactcagaaatctgcctgcctctgcctcccaa
gtgctgggattaaaggcgtgtgccaccatgctcggctgggagttgaatat
ttaagacctctgcttgctcctgtcaacccccactcacttcgactttggtt
ggccccactcactctggtcaactccactcgctcagtccctgctctctccg
gcccaaagatttatttattattataaatcagtacactgtagctgtcttca
gacccaccagaagaggacatcagatctcattacagatggttgtgagccac
catatggttgctgagaattgaagtcagg
gaattcttgctttcaggtgggggtgaggctgaacagccctgaggtttata
aacaagagtagattatagagcagaccagaagcaccatgttcaattcttat
tgaaagggagaaaactgttctaggagaacaaaggcgcataacctgtaaca
catctcatcaaagccagggaaggagatcatgaagaagagctgtgttctgt
aagtctgtattgttcactactctgagtagtttaaaaacacatattatggt
agcacttttcttcttcctcttccttctcctcctcctcctccttcttcttc
tttttctgagacatggtttctctgcatagccctggctgtcctggaactca
ctctgtagaccaggctggcctcgaactcagaaatctgcctgcctctgccc
gagtgctgggattaaaggagtgcgccactacgcccggcttggtagcactt
ttcttgttgtaaaaatgcaaacagtattaaaatctagtaggtcaaaaaca
aaagagttgactgagaagcgatttctgactgttgggtaccactgggtgcc
tttctgtgtttcactttcttgtagactctcatctgggaagcccagagccc
atcaagtctttactcagggtaaggaatggttcaaactgctgatgtgtgtg
tctccctcttttagcatgatcataagtgagtcttttttttttttttgaga
cagggttttctctgtgtagccccctggctgtcctggaactcactctgtag
gccaggctggcctcgaactcagaaatctgcctgcctctgcctcctgagtg
ctgaaataaaggcgtgcgccaccactgccagggcaagtgagtccttcttt
acagtgtaaataattaccaaggtctgggaaagaaagtgtcttagtagatt
ctttatacttagattcatctctaggtgctggttggggaagctctaagtct
gtctagcggaaaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_28902409_28903086
seq2: B6Ng01-101M11.b_48_725 (reverse)

seq1  CCTGACTTCAATTCTCAGCAACCATATGGTGGCTCACAACCATCTGTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTTCAATTCTCAGCAACCATATGGTGGCTCACAACCATCTGTAAT  50

seq1  GAGATCTGATGTCCTCTTCTGGTGGGTCTGAAGACAGCTACAGTGTACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTGATGTCCTCTTCTGGTGGGTCTGAAGACAGCTACAGTGTACTG  100

seq1  ATTTATAATAATAAATAAATCTTTGGGCCGGAGAGAGCAGGGACTGAGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAATAATAAATAAATCTTTGGGCCGGAGAGAGCAGGGACTGAGCG  150

seq1  AGTGGAGTTGACCAGAGTGAGTGGGGCCAACCAAAGTCGAAGTGAGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGTTGACCAGAGTGAGTGGGGCCAACCAAAGTCGAAGTGAGTGGG  200

seq1  GGTTGACAGGAGCAAGCAGAGGTCTTAAATATTCAACTCCCAGCCGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGACAGGAGCAAGCAGAGGTCTTAAATATTCAACTCCCAGCCGAGCA  250

seq1  TGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGA  300

seq1  TTTCTGAGTTTAAGACCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTTAAGACCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCC  350

seq1  AGGGCTACACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAATTTAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAATTTAAAATA  400

seq1  GGGGCGAGGGGAGATGAGATAGGGGGTTTGCAGAGGGGAAACCAGGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGAGGGGAGATGAGATAGGGGGTTTGCAGAGGGGAAACCAGGAAAG  450

seq1  GGGGTACAACATTTGAAATGTAAATAAATAAAATAACCAATAAAATAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTACAACATTTGAAATGTAAATAAATAAAATAACCAATAAAATAAAT  500

seq1  AAAATTTAAAGTATTTTCAAATGCACGAGGGAAAGGTACGTTTGTCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAAAGTATTTTCAAATGCACGAGGGAAAGGTACGTTTGTCTGGA  550

seq1  CACAACCTCACAGGGAAGGAACTTCTACCTTCGCCTTTGTGTCACCTCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCTCACAGGGAAGGAACTTCTACCTTCGCCTTTGTGTCACCTCGT  600

seq1  TTTACAAGGACACACAGGTGGATGTGCTGGGACTTTGGTCTAAAGTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAGGACACACAGGTGGATGTGCTGGGACTTTGGTCTAAAGTCACA  650

seq1  CAGAGGGATGTACCAAAGCTGGGAATTC  678
      ||||||||||||||||||||||||||||
seq2  CAGAGGGATGTACCAAAGCTGGGAATTC  678

seq1: chr17_28777936_28778904
seq2: B6Ng01-101M11.g_72_1037

seq1  GAATTCTTGCTTTCAGGTGGGGGTGAGGCTGAACAGCCCTGAGGTTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTTTCAGGTGGGGGTGAGGCTGAACAGCCCTGAGGTTTATA  50

seq1  AACAAGAGTAGATTATAGAGCAGACCAGAAGCACCATGTTCAATTCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAGTAGATTATAGAGCAGACCAGAAGCACCATGTTCAATTCTTAT  100

seq1  TGAAAGGGAGAAAACTGTTCTAGGAGAACAAAGGCGCATAACCTGTAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGGAGAAAACTGTTCTAGGAGAACAAAGGCGCATAACCTGTAACA  150

seq1  CATCTCATCAAAGCCAGGGAAGGAGATCATGAAGAAGAGCTGTGTTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATCAAAGCCAGGGAAGGAGATCATGAAGAAGAGCTGTGTTCTGT  200

seq1  AAGTCTGTATTGTTCACTACTCTGAGTAGTTTAAAAACACATATTATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGTATTGTTCACTACTCTGAGTAGTTTAAAAACACATATTATGGT  250

seq1  AGCACTTTTCTTCTTCCTCTTCCTTCTCCTCCTCCTCCTCCTTCTTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTTCTTCTTCCTCTTCCTTCTCCTCCTCCTCCTCCTTCTTCTTC  300

seq1  TTTTTCTGAGACATGGTTTCTCTGCATAGCCCTGGCTGTCCTGGAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGAGACATGGTTTCTCTGCATAGCCCTGGCTGTCCTGGAACTCA  350

seq1  CTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCC  400

seq1  GAGTGCTGGGATTAAAGGAGTGCGCCACTACGCCCGGCTTGGTAGCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGGGATTAAAGGAGTGCGCCACTACGCCCGGCTTGGTAGCACTT  450

seq1  TTCTTGTTGTAAAAATGCAAACAGTATTAAAATCTAGTAGGTCAAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTGTAAAAATGCAAACAGTATTAAAATCTAGTAGGTCAAAAACA  500

seq1  AAAGAGTTGACTGAGAAGCGATTTCTGACTGTTGGGTACCACTGGGTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTGACTGAGAAGCGATTTCTGACTGTTGGGTACCACTGGGTGCC  550

seq1  TTTCTGTGTTTCACTTTCTTGTAGACTCTCATCTGGGAAGCCCAGAGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTTTCACTTTCTTGTAGACTCTCATCTGGGAAGCCCAGAGCCC  600

seq1  ATCAAGTCTTTACTCAGGGTAAGGAATGGTTCAAACTGCTGATGTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTCTTTACTCAGGGTAAGGAATGGTTCAAACTGCTGATGTGTGTG  650

seq1  TCTCCCTC-TTTAGCATGATCATAAGTGAGTC--TTTTTTTTTTTTGAGA  697
      |||||||| |||||||||||||||||||||||  ||||||||||||||||
seq2  TCTCCCTCTTTTAGCATGATCATAAGTGAGTCTTTTTTTTTTTTTTGAGA  700

seq1  CAGGG-TTTCTCTGTGTAGCCCCCTGGCTGTCCTGGAACTCACTCTGTAG  746
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTTCTCTGTGTAGCCCCCTGGCTGTCCTGGAACTCACTCTGTAG  750

seq1  GCCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCTGAGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCTGAGTG  800

seq1  CTGGAATTAAAGGCGTGCGCCACCACTGCCAGGGCAAGTGAGTCCTTCTT  846
      || ||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CT-GAAATAAAGGCGTGCGCCACCACTGCCAGGGCAAGTGAGTCCTTCTT  849

seq1  TACAGTGTAAATAATAGCCAAAGGCCTGGGAGAGCAGATGTGTCTTAGAA  896
      |||||||||||||||  || |||| |||||| ||   | ||||||||| |
seq2  TACAGTGTAAATAATTACC-AAGGTCTGGGAAAG--AAAGTGTCTTAGTA  896

seq1  GACTCATCAGACTTAGGACTCAATCCAGAGGTGCTGGTTGGGGATGCTCT  946
      || || | | ||||| || || |||   |||||||||||||||| |||||
seq2  GATTCTTTATACTTA-GATTC-ATCTCTAGGTGCTGGTTGGGGAAGCTCT  944

seq1  AAAGTCTGTCTAGCGGAGAATTT  969
       |||||||||||||||| |||||
seq2  -AAGTCTGTCTAGCGGAAAATTT  966