BAC Information

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BAC

Clone NameB6Ng01-101M13
Chromosome17 (Build37)
Map Location 71,762,909 - 71,929,477
singlet/doubletdoublet
Overlap geneSmchd1, LOC100043879, Ndc80, LOC668740, Spdya
Upstream geneDlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644
Downstream geneLOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4, Alk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101M13.bB6Ng01-101M13.g
ACCDH910861DH910862
length9521,098
definitionDH910861|Mus musculus domesticus DNA, BAC clone: B6Ng01-101M13, 5' end.DH910862|Mus musculus domesticus DNA, BAC clone: B6Ng01-101M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,928,524 - 71,929,477)(71,762,909 - 71,764,017)
sequence
gaattcaggctccagtcaccagaccaggatccaaatattactctacaagc
cttatgagaattaacataagccttggtttccttgtttgccatgtggagat
aacaatacttaaccttcagtggtagtggatattaagtgtattatgaatta
aaggagcttttttttgtttttgtttttttccagagacagggtttctctgt
gtagccctggctgttctggaactcactttgtagaccaggctggcctcgaa
ctcagaaatccccctgcctctgcctcctgagtgttgggattaaaggcgtg
cgccaccaagcccagctcaaagaatgtaaaagtaaaaaaaaaaaaaaaaa
aaacctaggagatagaagagggagaacaaatgacactttatagttgagtt
aataattagcctatttattgtcaaatatgtgtatgactaaaagaatgtgc
ttggagatgttgaaaagcaagagactatactgccagtgaaatttgttaag
caaatactgtgtccagtaaaaggaacaggagctatgctctactgccaagg
gactagagcagtggttttccacctgtgggtcatgacccccaaacaaccat
cagaaaacacaaatatttatattaggatttataacagtagcaaaattata
gttatgaagtaataacaaaaataattttatggttgggagtcaccacaaca
tgaggaactgtgttacaatgtcacagcattaggaaggttggaagccactg
gactggagtttagttccccttttagtgacacttcagtagtcattgtcctt
ctcataggatatggtaaagataagtagtaaaaatctgactgatgtaggtc
tgtttttttttttttttctatgaaaaaagagtctacaaaaaaaatctggg
ttttttttttctttttcttttcctgtttgttttcgacaagatttctctgt
aa
gaattctcagcatccacatggctgctcacaaccacctgtcactccaaaca
caggcttcaaagctttcttctggcctccatgaacatcaggtacaaacatg
gtacacagatgcatgcaggagaaacacccatacatattaagcaattagga
aaaaaaaaagtcatctattggtccttctaacttaaaaaagcacagcactc
aaacttcttttaaaaacaacaacaacaaaaaaaaaaccctcataataatg
ataatgcagattttatgagacctaaatctacaaaacaaacaagaaaaaaa
aaaagaaaaaaaaaagtaaaaaaaaaactgaagaccacatgctcaaatgt
aactaagcattagtgaaataggctaagatcattaaatccttaaatacctg
caaaatcacacaacagtatattcaagcaataatcaaactgaaacacaatt
gaaagatttgttgaaattggcctaagttctccaaatgactgttcctcagc
acagggaactgtcacatgtctttcagatccccagcaaaagatgaaaggcc
tgtgctctgtggacgtgtgagatgccaggcctatgctctgtggacgtgtg
agatgccatgcaagtaaggaaaagcactgccaagaaagaactacgatctc
tgtcactgtcactggcaggctcagaagaaagggctcaatccacaggatgg
gaagaggactctttacaaagggagtaacacagaatggcccaacaggatga
aaagactcaatattaagcagagaaatgttaaaccaatctcaagtaataaa
caacaaataaaaacaaacaaacaaataaagcaagagatgaaaggagagaa
aatttatttagtacaacagtctggaaacccagtattttcatattagatat
tttttaagaatagaaaatttagtatttcaaggaaaataaaacagatgttt
caaaactaaagtgtataaactacagagcagctgataaaaatgatctatat
catgaactcagacctcagaaatgagggaaaaccttccccaaccactgaac
tattcaaagatttaggatcggattagttgtagtcttgccaaggataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_71928524_71929477
seq2: B6Ng01-101M13.b_42_992 (reverse)

seq1  TACAGAGAAATCTTGTCGAAAACAAAACAGAAAAAGAAAAAGGAAAAAAA  50
      ||||||||||||||||||||||| |||||| |||||||||| ||||||||
seq2  TACAGAGAAATCTTGTCGAAAAC-AAACAGGAAAAGAAAAA-GAAAAAAA  48

seq1  AAACCCAGATTTTTTTTGTAGACTCTTTTATCATAG-AAAAAAAAAAAAA  99
      ||||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  AAACCCAGATTTTTTTTGTAGACTCTTTTTTCATAGAAAAAAAAAAAAAA  98

seq1  ACAGACCTACATCAGTCAGATTTTTACTACTTTATCTTTACCATATTCCT  149
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  ACAGACCTACATCAGTCAGATTTTTACTAC-TTATCTTTACCATA-TCCT  146

seq1  ATGAGAAGGACAATGACTACTGAAGTGTCACTAAAAGGGGAACTAAACTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAGGACAATGACTACTGAAGTGTCACTAAAAGGGGAACTAAACTC  196

seq1  CAGTCCAGTGGCTTCCAACCTTCCTAATGCTGTGACATTGTAACACAGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAGTGGCTTCCAACCTTCCTAATGCTGTGACATTGTAACACAGTT  246

seq1  CCTCATGTTGTGGTGACTCCCAACCATAAAATTATTTTTGTTATTACTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGTTGTGGTGACTCCCAACCATAAAATTATTTTTGTTATTACTTC  296

seq1  ATAACTATAATTTTGCTACTGTTATAAATCCTAATATAAATATTTGTGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTATAATTTTGCTACTGTTATAAATCCTAATATAAATATTTGTGTT  346

seq1  TTCTGATGGTTGTTTGGGGGTCATGACCCACAGGTGGAAAACCACTGCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGGTTGTTTGGGGGTCATGACCCACAGGTGGAAAACCACTGCTC  396

seq1  TAGTCCCTTGGCAGTAGAGCATAGCTCCTGTTCCTTTTACTGGACACAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCTTGGCAGTAGAGCATAGCTCCTGTTCCTTTTACTGGACACAGT  446

seq1  ATTTGCTTAACAAATTTCACTGGCAGTATAGTCTCTTGCTTTTCAACATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTAACAAATTTCACTGGCAGTATAGTCTCTTGCTTTTCAACATC  496

seq1  TCCAAGCACATTCTTTTAGTCATACACATATTTGACAATAAATAGGCTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCACATTCTTTTAGTCATACACATATTTGACAATAAATAGGCTAA  546

seq1  TTATTAACTCAACTATAAAGTGTCATTTGTTCTCCCTCTTCTATCTCCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAACTCAACTATAAAGTGTCATTTGTTCTCCCTCTTCTATCTCCTA  596

seq1  GGTTTTTTTTTTTTTTTTTTTTACTTTTACATTCTTTGAGCTGGGCTTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTTTTTTTTTTTTTTACTTTTACATTCTTTGAGCTGGGCTTGG  646

seq1  TGGCGCACGCCTTTAATCCCAACACTCAGGAGGCAGAGGCAGGGGGATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCACGCCTTTAATCCCAACACTCAGGAGGCAGAGGCAGGGGGATTT  696

seq1  CTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGAACAGCCAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGAACAGCCAGG  746

seq1  GCTACACAGAGAAACCCTGTCTCTGGAAAAAAACAAAAACAAAAAAAAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAGAGAAACCCTGTCTCTGGAAAAAAACAAAAACAAAAAAAAGC  796

seq1  TCCTTTAATTCATAATACACTTAATATCCACTACCACTGAAGGTTAAGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAATTCATAATACACTTAATATCCACTACCACTGAAGGTTAAGTA  846

seq1  TTGTTATCTCCACATGGCAAACAAGGAAACCAAGGCTTATGTTAATTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATCTCCACATGGCAAACAAGGAAACCAAGGCTTATGTTAATTCTC  896

seq1  ATAAGGCTTGTAGAGTAATATTTGGATCCTGGTCTGGTGACTGGAGCCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCTTGTAGAGTAATATTTGGATCCTGGTCTGGTGACTGGAGCCTG  946

seq1  AATTC  954
      |||||
seq2  AATTC  951

seq1: chr17_71762909_71764017
seq2: B6Ng01-101M13.g_67_1164

seq1  GAATTCTCAGCATCCACATGGCTGCTCACAACCACCTGTCACTCCAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCATCCACATGGCTGCTCACAACCACCTGTCACTCCAAACA  50

seq1  CAGGCTTCAAAGCTTTCTTCTGGCCTCCATGAACATCAGGTACAAACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTCAAAGCTTTCTTCTGGCCTCCATGAACATCAGGTACAAACATG  100

seq1  GTACACAGATGCATGCAGGAGAAACACCCATACATATTAAGCAATTAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAGATGCATGCAGGAGAAACACCCATACATATTAAGCAATTAGGA  150

seq1  AAAAAAAAAGTCATCTATTGGTCCTTCTAACTTAAAAAAGCACAGCACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGTCATCTATTGGTCCTTCTAACTTAAAAAAGCACAGCACTC  200

seq1  AAACTTCTTTTAAAAACAACAACAACAAAAAAAAAACCCTCATAATAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTTTTAAAAACAACAACAACAAAAAAAAAACCCTCATAATAATG  250

seq1  ATAATGCAGATTTTATGAGACCTAAATCTACAAAACAAACAAGAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCAGATTTTATGAGACCTAAATCTACAAAACAAACAAGAAAAAAA  300

seq1  AAAAGAAAAAAAAAAGTAAAAAAAAAACTGAAGACCACATGCTCAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAAAAAAGTAAAAAAAAAACTGAAGACCACATGCTCAAATGT  350

seq1  AACTAAGCATTAGTGAAATAGGCTAAGATCATTAAATCCTTAAATACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGCATTAGTGAAATAGGCTAAGATCATTAAATCCTTAAATACCTG  400

seq1  CAAAATCACACAACAGTATATTCAAGCAATAATCAAACTGAAACACAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCACACAACAGTATATTCAAGCAATAATCAAACTGAAACACAATT  450

seq1  GAAAGATTTGTTGAAATTGGCCTAAGTTCTCCAAATGACTGTTCCTCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATTTGTTGAAATTGGCCTAAGTTCTCCAAATGACTGTTCCTCAGC  500

seq1  ACAGGGAACTGTCACATGTCTTTCAGATCCCCAGCAAAAGATGAAAGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAACTGTCACATGTCTTTCAGATCCCCAGCAAAAGATGAAAGGCC  550

seq1  TGTGCTCTGTGGACGTGTGAGATGCCAGGCCTATGCTCTGTGGACGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTGTGGACGTGTGAGATGCCAGGCCTATGCTCTGTGGACGTGTG  600

seq1  AGATGCCATGCAAGTAAGGAAAAGCACTGCCAAGAAAGAACTACGATCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCATGCAAGTAAGGAAAAGCACTGCCAAGAAAGAACTACGATCTC  650

seq1  TGTCACTGTCACTGGCAGGCTCAGAAGAAAGGGCTCAATCCACAGGATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGTCACTGGCAGGCTCAGAAGAAAGGGCTCAATCCACAGGATGG  700

seq1  GAAGAGGACTCTTTACAAAGGGAGTAACACAGAATGGCCCAACAGGATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGACTCTTTACAAAGGGAGTAACACAGAATGGCCCAACAGGATGA  750

seq1  AAAGACTCAATATTAAGCAGAGAAATGTTAAACCAATCTCAAGTAATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTCAATATTAAGCAGAGAAATGTTAAACCAATCTCAAGTAATAAA  800

seq1  CAAACAAATAAAAACAAACAAACAAATAAAAGCAAGAGATGAAAAGGAGA  850
      | ||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  C-AACAAATAAAAACAAACAAACAAAT-AAAGCAAGAGATG-AAAGGAGA  847

seq1  GAAAA-TTAATTAGTACAACAGTCTGGAAACCCAGTATTTTCATATTAGA  899
      ||||| ||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTATTTAGTACAACAGTCTGGAAACCCAGTATTTTCATATTAGA  897

seq1  TATTTTTTAAGAATAGAAAATTAAGTATTTCAAGGAAAATAAAACAGATG  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TATTTTTTAAGAATAGAAAATTTAGTATTTCAAGGAAAATAAAACAGATG  947

seq1  TTTCAAAACTAAAGTGTATAAACTACAGAGCAGCTGATAAAAATGAATCT  999
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTCAAAACTAAAGTGTATAAACTACAGAGCAGCTGATAAAAATG-ATCT  996

seq1  ATAATCATGAAACTCAGAACTTCAGAAAATGAGGGGAAAACTTCCCCAAA  1049
      || |||||| ||||||| || |||| ||||||||| ||| ||||||||| 
seq2  AT-ATCATG-AACTCAG-ACCTCAG-AAATGAGGGAAAACCTTCCCCAAC  1042

seq1  CACCTGAAACTATTCAAAGATTTAAGAATCAGAATAGTTGTAGTCTATGC  1099
      || ||| |||||||||||||||| || ||| || |||||||||||| |||
seq2  CA-CTG-AACTATTCAAAGATTT-AGGATCGGATTAGTTGTAGTCT-TGC  1088

seq1  AAAGGATAAA  1109
       |||||||||
seq2  CAAGGATAAA  1098