BAC Information

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BAC

Clone NameB6Ng01-102A21
Chromosome17 (Build37)
Map Location 86,972,549 - 87,086,436
singlet/doubletdoublet
Overlap genePrkce
Upstream geneLOC100043902, Six3, LOC100043717, Six2, LOC100043903, Srbd1, LOC545228
Downstream geneEpas1, 1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript, EG433144, Socs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102A21.bB6Ng01-102A21.g
ACCDH911055DH911056
length1,0901,118
definitionDH911055|Mus musculus domesticus DNA, BAC clone: B6Ng01-102A21, 5' end.DH911056|Mus musculus domesticus DNA, BAC clone: B6Ng01-102A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,085,385 - 87,086,436)(86,972,549 - 86,973,665)
sequence
gaattctttactacctggaccctgtttccccaggatttctgggaaagaag
ttttccaactttgtttctatttttttaaattaacatttaataaatgatcc
tttttggggataaaattataggtttaaatcatttctttccttagactttt
caactactttgttagattgtgttcatgactcattatctatggcattacat
gttatatagtcttgctgttgagaaacatagtaccgtgatcattctacatg
cttacacacaacattctttgtgttgcttcttagaaccttgtgaattcccc
tttttagttttaagtgttctgaaaatttacagtcacatacactgggtgag
ggtctgttttacccactgtgtttgaaacctgaagaaccctgtaatctgga
atctaataacttctcatgtagaacattttcttctgtagcctcccaaatat
tgaatcgtgaatcatctggccctagtcctttaatttcataatctttgtac
ttcctcactatttcaatctcccttcattctgctctcctgaaagtttcctc
attctttttaaaaaatcatcttctctaagattataaattacagggcttgt
ggtggtttgaatatgccaggcagtggtactatttggaggtatggccttgt
tggagtaggtatggtcttgttgcaataggtgtgccactgtgggcatgggc
tttaagaccctcatcctagctgcctgaaagccactcttcccatagtagcc
ttcagatgaatgtttagaactctcagttcctcctgcaccatgcctgccag
gatgctgccatactcccgccttgatgataatggactgaacctctgaacat
gtaggccagtcccaattaaatgttgtccttaacagagttgccttagttat
ggtgcctgttcacagcagtaaaactcttaactaagacaggggctggagag
atgtctcagctgttaagggcactggctgctcttctagaaaaacaggttca
attctcagcccagtatggaaagcacctccctactggtttttatccagtcc
aggatctgagaaactctttctggactcaccagctatggac
gaattctctgtagaagtggagaagtggactgccagttggcagactgatta
aaaaaaaaaaaaggcatctcatccggttaagaaccttccaaacaaaggca
tcatctgtgagatgctgaggtgtcaggccttttctgtgaagaggaattga
atatctggatatttctttatgaggacgcagtgctctacagaagcaggtat
cttggaaggagtatcacggcagtggattcaagcagagactggattctcca
agcctgagtcataggactttgtttctttaacgccctgggctaatggctga
gctcctaaaaatgggaattgtttcatcaaacaatcggcagctttgccatg
ataggtaagtttttgtgtgaaagtctgaggctggctcagtggccctcccc
attggctgtgtttgttttgaggtgacttgggtcacaggaggggtggagaa
gggaagagtatagccatcaagcagagaccttaggggccacacttagttgg
ctctgcttctttttatgattgtgtgctaacaggctaatcgactaaggctg
tgccctctgttcacccgttggctccgagtctcttatactgtctccgccca
tgttctttataaagcaagaaactggaacatttggttgccgagacgcacag
aaggactgtgctgtctcaagataacatctggaggttctcgggcctcttac
acagtaacacccacaaccttgggcgcttgttggcttcgtctccggcaagt
tttgtcactggcacttgcacacagaccttgccgtctcacaagatggtccc
catatatcttcctagctgcttcctctagtgaccttctctctgagtcatct
cttgagcttaacgagtgtggtctttggactgacctctgacacgtccaggt
gtgacgtacgcttactccatcctgaacagtaatagtcccacacagcctgt
ttcctcagagcttctgtttaagaacatcagaacttcctagactgtggtgg
ccttttggtttgtctagctcgctcctttctcatcctcctaatgtaactcc
atgggcccggaccttctctagaaatgcgggcactcttcctccttcacatg
gcatactctgccgctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_87085385_87086436
seq2: B6Ng01-102A21.b_83_1133 (reverse)

seq1  GTCCATAGCTGGTGAGTCCAG-AAGAGTTTCTCAGATCCCCTGGACTGGA  49
      ||||||||||||||||||||| |||||||||||||||  |||||||||| 
seq2  GTCCATAGCTGGTGAGTCCAGAAAGAGTTTCTCAGAT--CCTGGACTGG-  47

seq1  ATAAAAACCAGTAGTGA-GTGCTTT-CATACTTGTGCTGAGAATTGGACC  97
      |||||||||||||| || ||||||| ||||| || ||||||||||| |||
seq2  ATAAAAACCAGTAGGGAGGTGCTTTCCATAC-TGGGCTGAGAATTGAACC  96

seq1  CTGTTCTCTAGAAGAGCAGCCAGTGCCCTTAACAGCTGAGACATCTCTCC  147
         || ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTAGAAGAGCAGCCAGTGCCCTTAACAGCTGAGACATCTCTCC  146

seq1  AGCCCCTGTCTTAGTTAAGAGTTTTACTGCTGTGAACAGGCACCATAACT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTGTCTTAGTTAAGAGTTTTACTGCTGTGAACAGGCACCATAACT  196

seq1  AAGGCAACTCTGTTAAGGACAACATTTAATTGGGACTGGCCTACATGTTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAACTCTGTTAAGGACAACATTTAATTGGGACTGGCCTACATGTTC  246

seq1  AGAGGTTCAGTCCATTATCATCAAGGCGGGAGTATGGCAGCATCCTGGCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTCAGTCCATTATCATCAAGGCGGGAGTATGGCAGCATCCTGGCA  296

seq1  GGCATGGTGCAGGAGGAACTGAGAGTTCTAAACATTCATCTGAAGGCTAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGTGCAGGAGGAACTGAGAGTTCTAAACATTCATCTGAAGGCTAC  346

seq1  TATGGGAAGAGTGGCTTTCAGGCAGCTAGGATGAGGGTCTTAAAGCCCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAAGAGTGGCTTTCAGGCAGCTAGGATGAGGGTCTTAAAGCCCAT  396

seq1  GCCCACAGTGGCACACCTATTGCAACAAGACCATACCTACTCCAACAAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAGTGGCACACCTATTGCAACAAGACCATACCTACTCCAACAAGG  446

seq1  CCATACCTCCAAATAGTACCACTGCCTGGCATATTCAAACCACCACAAGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCTCCAAATAGTACCACTGCCTGGCATATTCAAACCACCACAAGC  496

seq1  CCTGTAATTTATAATCTTAGAGAAGATGATTTTTTAAAAAGAATGAGGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAATTTATAATCTTAGAGAAGATGATTTTTTAAAAAGAATGAGGAA  546

seq1  ACTTTCAGGAGAGCAGAATGAAGGGAGATTGAAATAGTGAGGAAGTACAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGGAGAGCAGAATGAAGGGAGATTGAAATAGTGAGGAAGTACAA  596

seq1  AGATTATGAAATTAAAGGACTAGGGCCAGATGATTCACGATTCAATATTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGAAATTAAAGGACTAGGGCCAGATGATTCACGATTCAATATTT  646

seq1  GGGAGGCTACAGAAGAAAATGTTCTACATGAGAAGTTATTAGATTCCAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCTACAGAAGAAAATGTTCTACATGAGAAGTTATTAGATTCCAGA  696

seq1  TTACAGGGTTCTTCAGGTTTCAAACACAGTGGGTAAAACAGACCCTCACC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGTTCTTCAGGTTTCAAACACAGTGGGTAAAACAGACCCTCACC  746

seq1  CAGTGTATGTGACTGTAAATTTTCAGAACACTTAAAACTAAAAAGGGGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTATGTGACTGTAAATTTTCAGAACACTTAAAACTAAAAAGGGGAA  796

seq1  TTCACAAGGTTCTAAGAAGCAACACAAAGAATGTTGTGTGTAAGCATGTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAGGTTCTAAGAAGCAACACAAAGAATGTTGTGTGTAAGCATGTA  846

seq1  GAATGATCACGGTACTATGTTTCTCAACAGCAAGACTATATAACATGTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATCACGGTACTATGTTTCTCAACAGCAAGACTATATAACATGTAA  896

seq1  TGCCATAGATAATGAGTCATGAACACAATCTAACAAAGTAGTTGAAAAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAGATAATGAGTCATGAACACAATCTAACAAAGTAGTTGAAAAGT  946

seq1  CTAAGGAAAGAAATGATTTAAACCTATAATTTTATCCCCAAAAAGGATCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAAAGAAATGATTTAAACCTATAATTTTATCCCCAAAAAGGATCA  996

seq1  TTTATTAAATGTTAATTTAAAAAAATAGAAACAAAGTTGGAAAACTTCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAAATGTTAATTTAAAAAAATAGAAACAAAGTTGGAAAACTTCTT  1046

seq1  TCCCA  1052
      |||||
seq2  TCCCA  1051

seq1: chr17_86972549_86973665
seq2: B6Ng01-102A21.g_65_1182

seq1  GAATTCTCTGTAGAAGTGGAGAAGTGGACTGCCAGTTGGCAGACTGATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTAGAAGTGGAGAAGTGGACTGCCAGTTGGCAGACTGATTA  50

seq1  AAAAAAAAAAAAGGCATCTCATCCGGTTAAGAACCTTCCAAACAAAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGGCATCTCATCCGGTTAAGAACCTTCCAAACAAAGGCA  100

seq1  TCATCTGTGAGATGCTGAGGTGTCAGGCCTTTTCTGTGAAGAGGAATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTGAGATGCTGAGGTGTCAGGCCTTTTCTGTGAAGAGGAATTGA  150

seq1  ATATCTGGATATTTCTTTATGAGGACGCAGTGCTCTACAGAAGCAGGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGGATATTTCTTTATGAGGACGCAGTGCTCTACAGAAGCAGGTAT  200

seq1  CTTGGAAGGAGTATCACGGCAGTGGATTCAAGCAGAGACTGGATTCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAGGAGTATCACGGCAGTGGATTCAAGCAGAGACTGGATTCTCCA  250

seq1  AGCCTGAGTCATAGGACTTTGTTTCTTTAACGCCCTGGGCTAATGGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAGTCATAGGACTTTGTTTCTTTAACGCCCTGGGCTAATGGCTGA  300

seq1  GCTCCTAAAAATGGGAATTGTTTCATCAAACAATCGGCAGCTTTGCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTAAAAATGGGAATTGTTTCATCAAACAATCGGCAGCTTTGCCATG  350

seq1  ATAGGTAAGTTTTTGTGTGAAAGTCTGAGGCTGGCTCAGTGGCCCTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTAAGTTTTTGTGTGAAAGTCTGAGGCTGGCTCAGTGGCCCTCCCC  400

seq1  ATTGGCTGTGTTTGTTTTGAGGTGACTTGGGTCACAGGAGGGGTGGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTGTGTTTGTTTTGAGGTGACTTGGGTCACAGGAGGGGTGGAGAA  450

seq1  GGGAAGAGTATAGCCATCAAGCAGAGACCTTAGGGGCCACACTTAGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGTATAGCCATCAAGCAGAGACCTTAGGGGCCACACTTAGTTGG  500

seq1  CTCTGCTTCTTTTTATGATTGTGTGCTAACAGGCTAATCGACTAAGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTCTTTTTATGATTGTGTGCTAACAGGCTAATCGACTAAGGCTG  550

seq1  TGCCCTCTGTTCACCCGTTGGCTCCGAGTCTCTTATACTGTCTCCGCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTGTTCACCCGTTGGCTCCGAGTCTCTTATACTGTCTCCGCCCA  600

seq1  TGTTCTTTATAAAGCAAGAAACTGGAACATTTGGTTGCCGAGACGCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTATAAAGCAAGAAACTGGAACATTTGGTTGCCGAGACGCACAG  650

seq1  AAGGACTGTGCTGTCTCAAGATAACATCTGGAGGTTCTCGGGCCTCTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTGTGCTGTCTCAAGATAACATCTGGAGGTTCTCGGGCCTCTTAC  700

seq1  ACAGTAACACCCACAACCTTGGGCGCTTGTTGGCTTCGTCTCCGGCAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAACACCCACAACCTTGGGCGCTTGTTGGCTTCGTCTCCGGCAAGT  750

seq1  TTTGTCACTGGCACTTGCACACAGACCTTGCCGTCTCACAAGATGGTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACTGGCACTTGCACACAGACCTTGCCGTCTCACAAGATGGTCCC  800

seq1  CATATATCTTCCTAGCTGCTTCCTCTAGTGACCTTCTCTCTGAGTCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATCTTCCTAGCTGCTTCCTCTAGTGACCTTCTCTCTGAGTCATCT  850

seq1  CTTGAGCTTAACGAGTGTGGTCTTTGGACTGACCTCTGACACGTCCAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCTTAACGAGTGTGGTCTTTGGACTGACCTCTGACACGTCCAGGT  900

seq1  GTGACGTACGCTTACTCCATCCTGAACAGTAATAGTCCCCACACAGCCTG  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTGACGTACGCTTACTCCATCCTGAACAGTAATAGT-CCCACACAGCCTG  949

seq1  TTTCCTCAGAGCTTCTGTTTAAGAACATCAGAACTTTTCCTAGACTGTGG  1000
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  TTTCCTCAGAGCTTCTGTTTAAGAACATCAGAAC--TTCCTAGACTGTGG  997

seq1  TGGC--TTTTGTTTGTCTAGCTCGCTCC-TTCTCATCCT-CTAATGTTAA  1046
      ||||  ||| |||||||||||||||||| |||||||||| |||||| |||
seq2  TGGCCTTTTGGTTTGTCTAGCTCGCTCCTTTCTCATCCTCCTAATG-TAA  1046

seq1  CT-CATTTGCCCCGACCTTCTCTAGAAAATGCGGCCACTCCTTCCTCCTT  1095
      || |||  |||| |||||||||||| |||||||| |||| |||||||| |
seq2  CTCCATGGGCCCGGACCTTCTCTAG-AAATGCGGGCACT-CTTCCTCC-T  1093

seq1  TCACATTGCA---TCTGCCGCTAGA  1117
      |||||| |||   ||||||||||||
seq2  TCACATGGCATACTCTGCCGCTAGA  1118