BAC Information

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BAC

Clone NameB6Ng01-102C06
Chromosome17 (Build37)
Map Location 29,865,869 - 30,002,255
singlet/doubletdoublet
Overlap geneMdga1
Upstream geneMapk14, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik
Downstream geneLOC100042885, LOC100042888, Zfand3, Btbd9, EG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102C06.bB6Ng01-102C06.g
ACCDH911116DH911117
length1,1581,052
definitionDH911116|Mus musculus domesticus DNA, BAC clone: B6Ng01-102C06, 5' end.DH911117|Mus musculus domesticus DNA, BAC clone: B6Ng01-102C06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,865,869 - 29,867,046)(30,001,188 - 30,002,255)
sequence
gaattccgtgcagaagccctactgacccccccacccccaggagtatcttc
gtgcacatttggagaaaagaatctggcatattggacataatgcatccacc
actcagcctagaactagggaggcagaaacaggaggattactataaagttg
ctatcacccggggctatatatcgagatcttgtatcaaacaaaacaaagca
aaaaaaagaaaagaaaaaggaaaaaaaagaaaaggagaaaagaaaagaaa
aaagaaagaaagaaagaaagaagagaagagaaaaggaaagaaaggaaaag
aaaagaaaggaaaggaaaggaaaagaaaagaaaagaaaagaaaagaaaag
aaaagaaaagaaaagaagagaaaagaaaggaaaagaagcaaagcggtgat
tcagcctcactcttagtatttggcggactgagggaagtcctaggggttaa
ggtgcttgctgtaaaattatggggaccagagttcagatcccagcaaggca
ggcatctcacatgtatctgtaaccccagcttcaagggtgagtggagacag
gaggattgctgggccttctagcctagcctctagcctcgctgaggaaacat
gagctgatcagggagagctgttgcttgagaaacaggcagaaagtgatgga
gaacaccctacgctctctcctggctccacacacgtgggcagcatacacct
gcatacacgaacacggacatgcccataaatatataactaagttagtagat
aacaaacgaaggccagagaggtgactctggggttcagagtgcttgctgct
ctttctggggacccaaatttggttcctcccacctaaatcaggaagtttat
aaaccacctgtaacttcagctacaagggatttaaagccttcctctggccc
ccataaccacctgaacacacacgatacaggcatataaacacatggatgta
tgcataaatgataaagatttatttttattttatttttttagatttatttt
atttatttgagtacagtatagctgtctcagacacaccagagaggcgtcag
atcccattcagatggttgtgagccacatgtgtgctggaattgaactcaga
cttgagagcacagttcctctaccactgagccatctctctagccacgcttt
attttttt
gaattccacaggacagtgaacagagttgcaaggcagcttggagaatgcta
ggatctgtgttccggccactgtggtctcagtgagtgacctggtcaaggtg
tttttcttccctgtgcctcagtttccctttttgcaaaggaggctaaacat
tgacttgctcccccctccacacacaccttttttttttttttgtcttggaa
cagagataaagagctgaaatctatgcagggcacggcaggaccatgcttcc
actgagcatgtgcagagcgggtggtagggtctttataccacctcgtagag
aggcagagtgcccaggagctcacgtctttcttagtggaggctgatggttc
aggtagcttgctcgctatgtgccagatatcactttattttatttattcaa
cgagtgcatgcctatttacacacacgtgtaagcataaaacatatgcccac
gtatttgttcctgtgcgcatgcttgtggaagccagaggagagtgttaggt
gtcccgttgttactttctgccttattggctgaaaaaatggtctctgagct
agcaagacccagcaatcgtcttttcctgtccccttccccagcccccaata
gtgagatcaagccctaggtttttacatgggtgctggggaattgaactcag
gctccaaaggagcgccccctatcttcaaaggagcacaagagcgcccccta
ccttcagtccctgcataacccacgggatgactttctagcgtattcacaag
acatatcccttccagtttgatatctgcaagagggccatagtagtggtttc
tgtccctcttcttgcccctgtttcatactcttggggggctgtcactcaag
aggagcttacgttatttgggccagtgcatacatacattgcttggaacatt
cacggtggttttgagggacagccagagaccaagctcagaaagttagaaac
ttgagctgtgtcacccagcagggatagcagactgctgcagtctagactca
gagtctgctcctctctctagtctgtcatcgttctttgtcacatcccctac
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_29865869_29867046
seq2: B6Ng01-102C06.b_47_1204

seq1  GAATTCCGTGCAGAAGCCCTACTGACCCCCCCACCCCCAGGAGTATCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTGCAGAAGCCCTACTGACCCCCCCACCCCCAGGAGTATCTTC  50

seq1  GTGCACATTTGGAGAAAAGAATCTGGCATATTGGACATAATGCATCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACATTTGGAGAAAAGAATCTGGCATATTGGACATAATGCATCCACC  100

seq1  ACTCAGCCTAGAACTAGGGAGGCAGAAACAGGAGGATTACTATAAAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCCTAGAACTAGGGAGGCAGAAACAGGAGGATTACTATAAAGTTG  150

seq1  CTATCACCCGGGGCTATATATCGAGATCTTGTATCAAACAAAACAAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACCCGGGGCTATATATCGAGATCTTGTATCAAACAAAACAAAGCA  200

seq1  AAAAAAAGAAAAGAAAAAGGAAAAAAAAGAAAAGGAGAAAAGAAAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAAAAGAAAAAGGAAAAAAAAGAAAAGGAGAAAAGAAAAGAAA  250

seq1  AAAGAAAGAAAGAAAGAAAGAAGAGAAGAGAAAAGGAAAGAAAGGAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAGAGAAGAGAAAAGGAAAGAAAGGAAAAG  300

seq1  AAAAGAAAGGAAAGGAAAGGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGGAAAGGAAAGGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAG  350

seq1  AAAAGAAAAGAAAAGAAGAGAAAAGAAAGGAAAAGAAGCAAAGCGGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGAAAAGAAGAGAAAAGAAAGGAAAAGAAGCAAAGCGGTGAT  400

seq1  TCAGCCTCACTCTTAGTATTTGGCGGACTGAGGGAAGTCCTAGGGGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCACTCTTAGTATTTGGCGGACTGAGGGAAGTCCTAGGGGTTAA  450

seq1  GGTGCTTGCTGTAAAATTATGGGGACCAGAGTTCAGATCCCAGCAAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTGCTGTAAAATTATGGGGACCAGAGTTCAGATCCCAGCAAGGCA  500

seq1  GGCATCTCACATGTATCTGTAACCCCAGCTTCAAGGGTGAGTGGAGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTCACATGTATCTGTAACCCCAGCTTCAAGGGTGAGTGGAGACAG  550

seq1  GAGGATTGCTGGGCCTTCTAGCCTAGCCTCTAGCCTCGCTGAGGAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTGCTGGGCCTTCTAGCCTAGCCTCTAGCCTCGCTGAGGAAACAT  600

seq1  GAGCTGATCAGGGAGAGCTGTTGCTTGAGAAACAGGCAGAAAGTGATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGATCAGGGAGAGCTGTTGCTTGAGAAACAGGCAGAAAGTGATGGA  650

seq1  GAACACCCTACGCTCTCTCCTGGCTCCACACACGTGGGCAGCATACACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCCTACGCTCTCTCCTGGCTCCACACACGTGGGCAGCATACACCT  700

seq1  GCATACACGAACACGGACATGCCCATAAATATATAACTAAGTTAGTAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACACGAACACGGACATGCCCATAAATATATAACTAAGTTAGTAGAT  750

seq1  AACAAACGAAGGCCAGAGAGGTGACTCTGGGGTTCAGAGTGCTTGCTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACGAAGGCCAGAGAGGTGACTCTGGGGTTCAGAGTGCTTGCTGCT  800

seq1  CTTTCTGGGGACCCAAATTTGGTTCCTCCCACCTAAATCAGGAAGTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGGGGACCCAAATTTGGTTCCTCCCACCTAAATCAGGAAGTTTAT  850

seq1  AAACCACCTGTAACTTCAGCTACAAGGGATTTAAAGCCTTCCTCTGGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACCTGTAACTTCAGCTACAAGGGATTTAAAGCCTTCCTCTGGCCC  900

seq1  CCATAACCACCTGAACACACACGATACAGGCATATAAACACATGGATGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACCACCTGAACACACACGATACAGGCATATAAACACATGGATGTA  950

seq1  TGCATAAATGATAAAGATTTTATTTTTTATTTTATTTTTTAAGATTTATT  1000
      ||||||||||||||||||||   ||||||||||||||||| |||||||||
seq2  TGCATAAATGATAAAGATTT--ATTTTTATTTTATTTTTTTAGATTTATT  998

seq1  TTATTTATTTGAGTACAGTATAGCTGTCCTCAGACACACCAGAAGAGGGC  1050
      ||||||||||||||||||||||||||| |||||||||||||| ||| |||
seq2  TTATTTATTTGAGTACAGTATAGCTGT-CTCAGACACACCAG-AGA-GGC  1045

seq1  GTCAGATCCCATTTCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAAT  1100
      ||||||||||| ||||||||||||||||||| ||||||  |||| |||||
seq2  GTCAGATCCCA-TTCAGATGGTTGTGAGCCA-CATGTG--TGCT-GGAAT  1090

seq1  TGAACTCAGGACCTTTGGAAGAGCAACCAGTTCTCTTAACCACTGAGCCA  1150
      |||||||| |||  |||  ||||||  |||||| ||  ||||||||||||
seq2  TGAACTCA-GAC--TTG--AGAGCA--CAGTTC-CTCTACCACTGAGCCA  1132

seq1  TCTCTCTAGCCCACGCTTTTATTTTTTT  1178
      ||||||||| |||||| |||||||||||
seq2  TCTCTCTAG-CCACGC-TTTATTTTTTT  1158

seq1: chr17_30001188_30002255
seq2: B6Ng01-102C06.g_67_1118 (reverse)

seq1  ATGTAGGGGGATGTGACAAAGAACCGGAGTGACAGACTAGAGAGAGGAGC  50
      ||||| ||||||||||||||||||  || |||||||||||||||||||||
seq2  ATGTA-GGGGATGTGACAAAGAAC--GA-TGACAGACTAGAGAGAGGAGC  46

seq1  AGACTTCTGAAGTCTAGAACTGGCAGCCAGGTCTGCTATCCCCTGCTGGG  100
      |||| |||| ||||||| ||| |||||   ||||||||| ||||||||||
seq2  AGAC-TCTG-AGTCTAG-ACT-GCAGC--AGTCTGCTAT-CCCTGCTGGG  89

seq1  TGACACAGCTCAAGTTTCTTAACCTTTCTGAGCCTTGGTCTCTTGGCTGT  150
      |||||||||||||||||||  | ||||||||| ||||||||| |||||||
seq2  TGACACAGCTCAAGTTTCT--AACTTTCTGAG-CTTGGTCTC-TGGCTGT  135

seq1  CCCTCAAAACCACCGTGAATGTTCCAAGCAATGTATGTATGCACTGGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAAACCACCGTGAATGTTCCAAGCAATGTATGTATGCACTGGCCC  185

seq1  AAATAACGTAAGCTCCTCTTGAGTGACAGCCCCCCAAGAGTATGAAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACGTAAGCTCCTCTTGAGTGACAGCCCCCCAAGAGTATGAAACAG  235

seq1  GGGCAAGAAGAGGGACAGAAACCACCTACTATGGCCCTCTTGCAGATATC  300
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGGCAAGAAGAGGGACAGAAACCA-CTACTATGGCCCTCTTGCAGATATC  284

seq1  AAACTGGAAGGGATATGTCTTGTGAATACGCTAGAAAGTCATCCCGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGAAGGGATATGTCTTGTGAATACGCTAGAAAGTCATCCCGTGGG  334

seq1  TTATGCAGGGACTGAAGGTAGGGGGCGCTCTTGTGCTCCTTTGAAGATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAGGGACTGAAGGTAGGGGGCGCTCTTGTGCTCCTTTGAAGATAG  384

seq1  GGGGCGCTCCTTTGGAGCCTGAGTTCAATTCCCCAGCACCCATGTAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGCTCCTTTGGAGCCTGAGTTCAATTCCCCAGCACCCATGTAAAAA  434

seq1  CCTAGGGCTTGATCTCACTATTGGGGGCTGGGGAAGGGGACAGGAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGCTTGATCTCACTATTGGGGGCTGGGGAAGGGGACAGGAAAAGA  484

seq1  CGATTGCTGGGTCTTGCTAGCTCAGAGACCATTTTTTCAGCCAATAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTGCTGGGTCTTGCTAGCTCAGAGACCATTTTTTCAGCCAATAAGGC  534

seq1  AGAAAGTAACAACGGGACACCTAACACTCTCCTCTGGCTTCCACAAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTAACAACGGGACACCTAACACTCTCCTCTGGCTTCCACAAGCAT  584

seq1  GCGCACAGGAACAAATACGTGGGCATATGTTTTATGCTTACACGTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACAGGAACAAATACGTGGGCATATGTTTTATGCTTACACGTGTGTG  634

seq1  TAAATAGGCATGCACTCGTTGAATAAATAAAATAAAGTGATATCTGGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGGCATGCACTCGTTGAATAAATAAAATAAAGTGATATCTGGCAC  684

seq1  ATAGCGAGCAAGCTACCTGAACCATCAGCCTCCACTAAGAAAGACGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCGAGCAAGCTACCTGAACCATCAGCCTCCACTAAGAAAGACGTGAG  734

seq1  CTCCTGGGCACTCTGCCTCTCTACGAGGTGGTATAAAGACCCTACCACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGGCACTCTGCCTCTCTACGAGGTGGTATAAAGACCCTACCACCC  784

seq1  GCTCTGCACATGCTCAGTGGAAGCATGGTCCTGCCGTGCCCTGCATAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCACATGCTCAGTGGAAGCATGGTCCTGCCGTGCCCTGCATAGAT  834

seq1  TTCAGCTCTTTATCTCTGTTCCAAGACAAAAAAAAAAAAAAGGTGTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTCTTTATCTCTGTTCCAAGACAAAAAAAAAAAAAAGGTGTGTGT  884

seq1  GGAGGGGGGAGCAAGTCAATGTTTAGCCTCCTTTGCAAAAAGGGAAACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGGAGCAAGTCAATGTTTAGCCTCCTTTGCAAAAAGGGAAACTG  934

seq1  AGGCACAGGGAAGAAAAACACCTTGACCAGGTCACTCACTGAGACCACAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGGGAAGAAAAACACCTTGACCAGGTCACTCACTGAGACCACAG  984

seq1  TGGCCGGAACACAGATCCTAGCATTCTCCAAGCTGCCTTGCAACTCTGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGGAACACAGATCCTAGCATTCTCCAAGCTGCCTTGCAACTCTGTT  1034

seq1  CACTGTCCTGTGGAATTC  1068
      ||||||||||||||||||
seq2  CACTGTCCTGTGGAATTC  1052