BAC Information

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BAC

Clone NameB6Ng01-102D22
Chromosome17 (Build37)3 (Build37)
Map Location 23,727,707 - 23,727,871108,270,648 - 108,271,749
singlet/doubletsingletsinglet
Overlap geneZfp13
Upstream geneEG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213
Downstream geneZscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102D22.bB6Ng01-102D22.g
ACCDH911191DH911192
length1,0781,086
definitionDH911191|Mus musculus domesticus DNA, BAC clone: B6Ng01-102D22, 5' end.DH911192|Mus musculus domesticus DNA, BAC clone: B6Ng01-102D22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(23,727,707 - 23,727,871)(108,270,648 - 108,271,749)
sequence
gaattcatatctatccttgaaaacatgtagcctgtagatcaaatgttggt
catttgtgagtcagtttggagtaaaataaggctcaactgaaatatacaac
taggtaatatcagtgtcatagtggtaatatcaattatagttcaacacttt
aaaactccttccattgagattggattggaatgaaatacttgttctgccaa
aggaacatagcaacaaaataacaggatcctaacaaccttctgttgtacct
gtagatcagtatctccctctgacatcagcagagaagcttcctcttgcagt
agataggaactaacacagagacccacagctggaccgtgtacagagagtga
gagagtttaaaacactcagccatagacgatgacttcatcatccttcccct
cccgcagggctcagtgaactatgcagaagaggaagcagaaagattctaag
agccagaggggatggaagacaccaaagaaacaatgtcttccccagccata
acagaacagtactgggggctggagagatggctcagcagtccaaaggtttt
gagttcaaatcccagcaaccacatggtggctcacaaccatccgtaatgag
atctgacgccctcttctggtgtgtctgaagacaactacagtgtacttaca
tatgataaataaacaaacaaaaaaagaacagtactgacatgcacatggat
gcacaggcagcatgcacggggtctgtccaagagctcccatccctaaccaa
gaagctatcaccaactgacaaccactggcagaggaaaaatgtgttttgtc
caacagagcctcattgggtatataaaccacacttaacggcaggtccatgc
ccagcagaagatgccaacacaaaacaaactcaatgatatttctgtacatt
tttgtctcatattgctttgtttgggcactttttttaaatcttactggtct
tttgcttgtatattatagtttccaattttgtggttttatggattttgttt
gtgtgtctgtttcttgtacttatcttcactgtttatcatattttggcctg
tttggttttctcaaaagagagagaaaga
gaattccacttagaacccggcaccttgttattcttggtccctggaccaca
gggcacacaggcctgtgcaccgtaaggctggtgagctttcaggatggtgt
tagagggacagaggtggcaggtcccagaatcccggttgatgtaatggcca
gcaggacaagaggtgcaggaggagcccaaatcagaggcttctagggcaca
gggacggcagtaggaggccacgccccccatgacgttggtgacattgattg
agtagatcttggcgacatcattagtatacttcctgccctggagatgaggg
aacaaaagcagagaaaggagaggcctgaagcagcagcagccataggaaga
gcagagtttattttcactttacttgtgcatgtacacgtgtgtacgtgtgt
acatgtgtatatgtgtatgtgaatgtacatgcacatatgtaagtatgcat
gtagaagccagatgtggatatcagacgttcctttcatcactctccatctc
attttttgagacagggtctctcactgaactaattgtctcatgtcctggct
tttacatggatgctagagatcaaacccaggtcctcgggctccatggcaac
agctggtactgactgaaccactagaagcatctttctcactttatttcatg
gtggctctttgtatgaaaattaaagatgaacgatactaaaaatagagagc
taggtggtggtggtgtgcacctttaatcccagcccttgggaggcagaggc
aggtggagctctacacagagaaaccctgtctcaaaaaaccaaaagttaag
taaataagtaagtaagtaataaataaatagtttaactttaaaagaacaat
ggcttttaaggtatattttgtgtaattaacaagactaacccattttaagt
tccatgttatgcgccatgggaatttatagaaattctaatatatggggggg
ggtctttgcaaagaaaaagaaaaaaattcgacgtactaaaagaaatcaat
ttagactgggtgtgtcttactactctagaatccagcactcatgggccaag
ctgaagatcgcaagtggaaaacaaccaacctgatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_23727707_23727871
seq2: B6Ng01-102D22.b_603_1118

seq1  CAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCT  50
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  CAGCAACCACATGGTGGCTCACAACCATCCGTAATGAGATCTGACGCCCT  50

seq1  CTTCTGGTGTGTCTGAAGATAGCTACATTGTACTT-------ATAAATAA  93
      ||||||||||||||||||| | ||||| |||||||       ||||||||
seq2  CTTCTGGTGTGTCTGAAGACAACTACAGTGTACTTACATATGATAAATAA  100

seq1  A------------------TGTTTACAT---------TGAAAATG-----  111
      |                  |  | ||||         || | | |     
seq2  ACAAACAAAAAAAGAACAGTACTGACATGCACATGGATGCACAGGCAGCA  150

seq1  TAAACGAGG-------AAAATACCTAAT---TAAAAAAAATTTTTTTAAA  151
      |  ||| ||       || |   |  ||   |||  || |   | | |  
seq2  TGCACGGGGTCTGTCCAAGAGCTCCCATCCCTAACCAAGAAGCTATCACC  200

seq1  AAGAGAGA------GAAAGA------------------------------  165
      ||  || |      |  |||                              
seq2  AACTGACAACCACTGGCAGAGGAAAAATGTGTTTTGTCCAACAGAGCCTC  250

seq1  --------------------------------------------------  165
                                                        
seq2  ATTGGGTATATAAACCACACTTAACGGCAGGTCCATGCCCAGCAGAAGAT  300

seq1  --------------------------------------------------  165
                                                        
seq2  GCCAACACAAAACAAACTCAATGATATTTCTGTACATTTTTGTCTCATAT  350

seq1  --------------------------------------------------  165
                                                        
seq2  TGCTTTGTTTGGGCACTTTTTTTAAATCTTACTGGTCTTTTGCTTGTATA  400

seq1  --------------------------------------------------  165
                                                        
seq2  TTATAGTTTCCAATTTTGTGGTTTTATGGATTTTGTTTGTGTGTCTGTTT  450

seq1  --------------------------------------------------  165
                                                        
seq2  CTTGTACTTATCTTCACTGTTTATCATATTTTGGCCTGTTTGGTTTTCTC  500

seq1  ----------------  165
                      
seq2  AAAAGAGAGAGAAAGA  516

seq1: chr3_108270648_108271749
seq2: B6Ng01-102D22.g_65_1150

seq1  GAATTCCACTTAGAACCCGGCACCTTGTTATTCTTGGTCCCTGGACCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTAGAACCCGGCACCTTGTTATTCTTGGTCCCTGGACCACA  50

seq1  GGGCACACAGGCCTGTGCACCGTAAGGCTGGTGAGCTTTCAGGATGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACACAGGCCTGTGCACCGTAAGGCTGGTGAGCTTTCAGGATGGTGT  100

seq1  TAGAGGGACAGAGGTGGCAGGTCCCAGAATCCCGGTTGATGTAATGGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGACAGAGGTGGCAGGTCCCAGAATCCCGGTTGATGTAATGGCCA  150

seq1  GCAGGACAAGAGGTGCAGGAGGAGCCCAAATCAGAGGCTTCTAGGGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACAAGAGGTGCAGGAGGAGCCCAAATCAGAGGCTTCTAGGGCACA  200

seq1  GGGACGGCAGTAGGAGGCCACGCCCCCCATGACGTTGGTGACATTGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGGCAGTAGGAGGCCACGCCCCCCATGACGTTGGTGACATTGATTG  250

seq1  AGTAGATCTTGGCGACATCATTAGTATACTTCCTGCCCTGGAGATGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATCTTGGCGACATCATTAGTATACTTCCTGCCCTGGAGATGAGGG  300

seq1  AACAAAAGCAGAGAAAGGAGAGGCCTGAAGCAGCAGCAGCCATAGGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGCAGAGAAAGGAGAGGCCTGAAGCAGCAGCAGCCATAGGAAGA  350

seq1  GCAGAGTTTATTTTCACTTTACTTGTGCATGTACACGTGTGTACGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTTTATTTTCACTTTACTTGTGCATGTACACGTGTGTACGTGTGT  400

seq1  ACATGTGTATATGTGTATGTGAATGTACATGCACATATGTAAGTATGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTATATGTGTATGTGAATGTACATGCACATATGTAAGTATGCAT  450

seq1  GTAGAAGCCAGATGTGGATATCAGACGTTCCTTTCATCACTCTCCATCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGCCAGATGTGGATATCAGACGTTCCTTTCATCACTCTCCATCTC  500

seq1  ATTTTTTGAGACAGGGTCTCTCACTGAACTAATTGTCTCATGTCCTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGAGACAGGGTCTCTCACTGAACTAATTGTCTCATGTCCTGGCT  550

seq1  TTTACATGGATGCTAGAGATCAAACCCAGGTCCTCGGGCTCCATGGCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGGATGCTAGAGATCAAACCCAGGTCCTCGGGCTCCATGGCAAC  600

seq1  AGCTGGTACTGACTGAACCACTAGAAGCATCTTTCTCACTTTATTTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTACTGACTGAACCACTAGAAGCATCTTTCTCACTTTATTTCATG  650

seq1  GTGGCTCTTTGTATGAAAATTAAAGATGAACGATACTAAAAATAGAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCTTTGTATGAAAATTAAAGATGAACGATACTAAAAATAGAGAGC  700

seq1  TAGGTGGTGGTGGTGTGCACCTTTAATCCCAGCCCTTGGGAGGCAGAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGTGGTGGTGTGCACCTTTAATCCCAGCCCTTGGGAGGCAGAGGC  750

seq1  AGGTGGAGCTCTACACAGAGAAACCCTGTCTCAAAAAACCAAAAGTTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGCTCTACACAGAGAAACCCTGTCTCAAAAAACCAAAAGTTAAG  800

seq1  TAAATAAGTAAGTAAGTAAATAAATAAATAGTTTAACTTTAAAAAGAACA  850
      ||||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  TAAATAAGTAAGTAAGT-AATAAATAAATAGTTTAACTTT-AAAAGAACA  848

seq1  ATGGCTTTTAAGGTATATTTTGTGTAATTAACAAGACTAACCCATTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTTAAGGTATATTTTGTGTAATTAACAAGACTAACCCATTTTAA  898

seq1  GTTCCATGTTATGCGCCATGGGGAATTTATAGGAAATTCTAATATATGGG  950
      ||||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  GTTCCATGTTATGCGCCAT-GGGAATTTATA-GAAATTCTAATATATGGG  946

seq1  GGGGGGTCTTTGTCAAAGAAAAAAGAAAAAAAATCCACGTACTTAAAAAG  1000
      |||||||||||| ||||| ||||||||||||| || |||||||  |||||
seq2  GGGGGGTCTTTG-CAAAG-AAAAAGAAAAAAATTCGACGTACT--AAAAG  992

seq1  AAATCAAAATTAGGACTGGGTGTGGTCTTACTACCCTAGAATCCCAGCAC  1050
      |||||  ||||  |||||||||| |||||||||| ||||||| |||||||
seq2  AAATC--AATTTAGACTGGGTGT-GTCTTACTACTCTAGAAT-CCAGCAC  1038

seq1  TCAGGGGCAGAGGCAGGAGGATCGCAAGGTGGAAGACAACCAGCCTGGAT  1100
      ||| ||||  ||    || |||||||| |||||| ||||||| ||| |||
seq2  TCATGGGCCAAG--CTGAAGATCGCAA-GTGGAAAACAACCAACCT-GAT  1084

seq1  TA  1102
      ||
seq2  TA  1086