BAC Information

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BAC

Clone NameB6Ng01-102G10
Chromosome17 (Build37)
Map Location 56,124,666 - 56,283,998
singlet/doubletdoublet
Overlap geneFsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b
Upstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd
Downstream geneTnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102G10.bB6Ng01-102G10.g
ACCDH911305DH911306
length1,0841,051
definitionDH911305|Mus musculus domesticus DNA, BAC clone: B6Ng01-102G10, 5' end.DH911306|Mus musculus domesticus DNA, BAC clone: B6Ng01-102G10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,124,666 - 56,125,772)(56,282,942 - 56,283,998)
sequence
gaattctgtggtaactttggggtcacacaggtaataaccatcagtgtcac
cgctgttgccattgtgccgggtgtggtgcgcacacctttaatcccagcac
tcgggaagcagaggcagggagtctcttgagttgcaggccagtctgggctt
tagagagagagacctcctctggtaggaaaatcaagtcaccctgttctcag
tcaaaccataagggcagctgtaactcctggtgggcagtgagtgcacagac
atccccagccaattatgccatcttcattcccgctggaaggttaggacctc
tctgtgaatgaagtggtcttaacctgtccaggccaagtctgcctcttaca
ggttctcatggccacctgcaaggtctgggcagaagcggaggctttgagtg
gtgagtggttctcacagtcaacttccagcctcagccccactctggggtca
gtggccaatactgtaatagttgaccaagagagttgtctcatacccaatca
caaccatgacctattttcttaggagtggggggagggcagtgtttaaagac
cctggggttgatgaagccccaggctggtggtcctcaaccttcctaatgct
tgaaccctttaatatagtccctcatgttgtggtgaccccccacccataaa
atttttcattgctacttcatacccataattttgctactgttatgaatcat
aacgtaaatatttttgttttccaagggtcttaggcgatccctgtgaagaa
gtcatttgaccccaatgtggttgagaaactctgcctcagcctttgccggg
ctaatagcagatgaactctttagataaatatgtctagccctgaagagcaa
gggctggtagaaaggtttctaggggaagatacaatctgaggctttggggg
atgtataggaccttgtctcactgtgcgaccataatggctctatctggtgt
gtacaagcagtaagtgcagcatgtgggcacgaagacagctctcaggtaga
aaggtgggcacctgggtgccatttgatagcaaacgatcatctgaggtgag
taggatagtctggagttcacagacagataaaggc
gaattcacccatttaataacttctcttctccatccagttgggccgagtaa
agtacattcacacacctttgtggctgtgcccaccgtcgtctgtcttcaga
actttccatctccccctacgtctgtcttccccttctctaggctgctgcca
tccaccttcccacttccgggctctggttgtgaggactccagagacctcct
gagagtgggaccatgcagggcacatccttttgtatgtggccatttccctg
agtgtggtgacccagcaggatatccatgtcggggctgatgtatagatccc
cattctttacataactgtgtggtagtacagtgtacagctgcgccaagctg
tgtggctctctccaggctgcagccctgaatgccgtcctaccatgggcctg
tctctgtggacaccaccctagatacctttggagttcagtctccctgagct
gcagactccacgcgcttgcctctaatggctccagctctgcactgtgtgtg
caaaggccctgaggcaggcaggatcagagatggtcttccttcttagggtc
caggcaagtgtgatggtggctttatcaacatatccctcttctctgtgggg
accaggatgcgggttgcctcatttgcatatgcaaatgagggcctggagga
tgagggtgattgggctcttctggggactttgctggttagagtgcaaatgc
agtaattgcttagacctccaaggagatctgctgaggccagtgggggaggg
ggtatctgggggcttcagctgggttgcactcactggaaggtgcagggcag
tcccagccacccgacacagctcagcctcacaggcatcctctccctacagg
gaaaggactcagaccaaccccacagcactctgtcctgcgtgcgaattctg
cttggctacagaagtgcaaagtgcccagagttgtgccaactttacagcag
tactctactgagtatccatcccagtgtgcaaatgccctagctctgtgcca
taagtaaggggtctaaggaaacacgcaaggttatctagtctacaatacct
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_56124666_56125772
seq2: B6Ng01-102G10.b_43_1126

seq1  GAATTCTGTGGTAACTTTGGGGTCACACAGGTAATAACCATCAGTGTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGTAACTTTGGGGTCACACAGGTAATAACCATCAGTGTCAC  50

seq1  CGCTGTTGCCATTGTGCCGGGTGTGGTGCGCACACCTTTAATCCCAGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTTGCCATTGTGCCGGGTGTGGTGCGCACACCTTTAATCCCAGCAC  100

seq1  TCGGGAAGCAGAGGCAGGGAGTCTCTTGAGTTGCAGGCCAGTCTGGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGAAGCAGAGGCAGGGAGTCTCTTGAGTTGCAGGCCAGTCTGGGCTT  150

seq1  TAGAGAGAGAGACCTCCTCTGGTAGGAAAATCAAGTCACCCTGTTCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGAGAGACCTCCTCTGGTAGGAAAATCAAGTCACCCTGTTCTCAG  200

seq1  TCAAACCATAAGGGCAGCTGTAACTCCTGGTGGGCAGTGAGTGCACAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCATAAGGGCAGCTGTAACTCCTGGTGGGCAGTGAGTGCACAGAC  250

seq1  ATCCCCAGCCAATTATGCCATCTTCATTCCCGCTGGAAGGTTAGGACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGCCAATTATGCCATCTTCATTCCCGCTGGAAGGTTAGGACCTC  300

seq1  TCTGTGAATGAAGTGGTCTTAACCTGTCCAGGCCAAGTCTGCCTCTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAATGAAGTGGTCTTAACCTGTCCAGGCCAAGTCTGCCTCTTACA  350

seq1  GGTTCTCATGGCCACCTGCAAGGTCTGGGCAGAAGCGGAGGCTTTGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCATGGCCACCTGCAAGGTCTGGGCAGAAGCGGAGGCTTTGAGTG  400

seq1  GTGAGTGGTTCTCACAGTCAACTTCCAGCCTCAGCCCCACTCTGGGGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGGTTCTCACAGTCAACTTCCAGCCTCAGCCCCACTCTGGGGTCA  450

seq1  GTGGCCAATACTGTAATAGTTGACCAAGAGAGTTGTCTCATACCCAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCAATACTGTAATAGTTGACCAAGAGAGTTGTCTCATACCCAATCA  500

seq1  CAACCATGACCTATTTTCTTAGGAGTGGGGGGAGGGCAGTGTTTAAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATGACCTATTTTCTTAGGAGTGGGGGGAGGGCAGTGTTTAAAGAC  550

seq1  CCTGGGGTTGATGAAGCCCCAGGCTGGTGGTCCTCAACCTTCCTAATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGTTGATGAAGCCCCAGGCTGGTGGTCCTCAACCTTCCTAATGCT  600

seq1  TGAACCCTTTAATATAGTCCCTCATGTTGTGGTGACCCCCCACCCATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCTTTAATATAGTCCCTCATGTTGTGGTGACCCCCCACCCATAAA  650

seq1  ATTTTTCATTGCTACTTCATACCCATAATTTTGCTACTGTTATGAATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCATTGCTACTTCATACCCATAATTTTGCTACTGTTATGAATCAT  700

seq1  AACGTAAATATTTTTGTTTTCCAAGGGTCTTAGGCGATCCCTGTGAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTAAATATTTTTGTTTTCCAAGGGTCTTAGGCGATCCCTGTGAAGAA  750

seq1  GTCATTTGACCCCAATGTGGTTGAGAAACTCTGCCTCAGCCTTTGCCGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTGACCCCAATGTGGTTGAGAAACTCTGCCTCAGCCTTTGCCGGG  800

seq1  CTAATAGCAGATGAACTCTTTAGATAAATATGTCTAGCCCTGAAGAGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGCAGATGAACTCTTTAGATAAATATGTCTAGCCCTGAAGAGCAA  850

seq1  GGGCTGGTAGAAAGGTTTCTAGGGGAAGATACAATCTGAGGCTTTGGGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGTAGAAAGGTTTCTAGGGGAAGATACAATCTGAGGCTTTGGGGG  900

seq1  ATGTATAGGACCTTGTCTCACTGTGCGACCATAATGGCTCTATTCTGGTT  950
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  ATGTATAGGACCTTGTCTCACTGTGCGACCATAATGGCTCTA-TCTGGT-  948

seq1  GGTTGTACAAGCAGTAAGTGGCAAGCATGTGGGCCACCGAAGGACAGCTC  1000
         |||||||||||||||||   |||||||||||   |||| ||||||||
seq2  --GTGTACAAGCAGTAAGTG--CAGCATGTGGGC--ACGAA-GACAGCTC  991

seq1  TCAGGGTAGGAAAGGGTGGGCACCCTGGGTGCCAATTTGAATAGCAAACC  1050
      ||| |||||  || |||||||| |||||||||| ||||| ||||||||| 
seq2  TCA-GGTAG--AAAGGTGGGCA-CCTGGGTGCC-ATTTG-ATAGCAAAC-  1034

seq1  GGATCAATCTGAGGTGAGTAAGGGATAGTCCTGAGTTCACAAGACAGGAT  1100
       |||| ||||||||||||||  ||||||||  |||||||| ||||| |||
seq2  -GATC-ATCTGAGGTGAGTA--GGATAGTCTGGAGTTCAC-AGACA-GAT  1078

seq1  AAGAGGC  1107
      || ||||
seq2  AA-AGGC  1084

seq1: chr17_56282942_56283998
seq2: B6Ng01-102G10.g_67_1117 (reverse)

seq1  AAGGTATTTTGTAGACTTGGATAACCTTGCGTGTTCTCCTT-GAGCACCT  49
      ||||||  |||||||| | |||||||||||||||| ||||| || | | |
seq2  AAGGTA--TTGTAGAC-TAGATAACCTTGCGTGTT-TCCTTAGACCCCTT  46

seq1  AC-TATGGCACCAGAGCTAGGGCATTTTGCACACTGGGATGGATAACCTC  98
      || ||||||| ||||||||||||| ||||||||||||||||||||  |||
seq2  ACTTATGGCA-CAGAGCTAGGGCA-TTTGCACACTGGGATGGATA--CTC  92

seq1  AGTAGAGTACCTGCTGTAAAGTTGGCACAACTCTGGGCACTTTGCACTTC  148
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGTA-CTGCTGTAAAGTTGGCACAACTCTGGGCACTTTGCACTTC  141

seq1  TGTAGCCAAGCAGAATTCGCACGCAGGACAGAGTGCTGTGGGGTTGGTCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCAAGCAGAATTCGCACGCAGGACAGAGTGCTGTGGGGTTGGTCT  191

seq1  GAGTCC-TTCCCTGTAGGGAGAGGATGCCTGTGAGGCTGAGCTGTGTCGG  247
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTTTCCCTGTAGGGAGAGGATGCCTGTGAGGCTGAGCTGTGTCGG  241

seq1  GTGGCTGGGACTGCCCTGCACCTTCCAGTGAGTGCAACCCAGCTGAAGCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGGGACTGCCCTGCACCTTCCAGTGAGTGCAACCCAGCTGAAGCC  291

seq1  CCCAGATACCCCCTCCCCCACTGGCCTCAGCAGATCTCCTTGGAGGTCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATACCCCCTCCCCCACTGGCCTCAGCAGATCTCCTTGGAGGTCTA  341

seq1  AGCAATTACTGCATTTGCACTCTAACCAGCAAAGTCCCCAGAAGAGCCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTACTGCATTTGCACTCTAACCAGCAAAGTCCCCAGAAGAGCCCA  391

seq1  ATCACCCTCATCCTCCAGGCCCTCATTTGCATATGCAAATGAGGCAACCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCTCATCCTCCAGGCCCTCATTTGCATATGCAAATGAGGCAACCC  441

seq1  GCATCCTGGTCCCCACAGAGAAGAGGGATATGTTGATAAAGCCACCATCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTGGTCCCCACAGAGAAGAGGGATATGTTGATAAAGCCACCATCA  491

seq1  CACTTGCCTGGACCCTAAGAAGGAAGACCATCTCTGATCCTGCCTGCCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCCTGGACCCTAAGAAGGAAGACCATCTCTGATCCTGCCTGCCTC  541

seq1  AGGGCCTTTGCACACACAGTGCAGAGCTGGAGCCATTAGAGGCAAGCGCG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTTTGCACACACAGTGCAGAGCTGGAGCCATTAGAGGCAAGCGCG  591

seq1  TGGAGTCTGCAGCTCAGGGAGACTGAACTCCAAAGGTATCTAGGGTGGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCTGCAGCTCAGGGAGACTGAACTCCAAAGGTATCTAGGGTGGTG  641

seq1  TCCACAGAGACAGGCCCATGGTAGGACGGCATTCAGGGCTGCAGCCTGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGAGACAGGCCCATGGTAGGACGGCATTCAGGGCTGCAGCCTGGA  691

seq1  GAGAGCCACACAGCTTGGCGCAGCTGTACACTGTACTACCACACAGTTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCACACAGCTTGGCGCAGCTGTACACTGTACTACCACACAGTTAT  741

seq1  GTAAAGAATGGGGATCTATACATCAGCCCCGACATGGATATCCTGCTGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAATGGGGATCTATACATCAGCCCCGACATGGATATCCTGCTGGG  791

seq1  TCACCACACTCAGGGAAATGGCCACATACAAAAGGATGTGCCCTGCATGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACACTCAGGGAAATGGCCACATACAAAAGGATGTGCCCTGCATGG  841

seq1  TCCCACTCTCAGGAGGTCTCTGGAGTCCTCACAACCAGAGCCCGGAAGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTCTCAGGAGGTCTCTGGAGTCCTCACAACCAGAGCCCGGAAGTG  891

seq1  GGAAGGTGGATGGCAGCAGCCTAGAGAAGGGGAAGACAGACGTAGGGGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTGGATGGCAGCAGCCTAGAGAAGGGGAAGACAGACGTAGGGGGA  941

seq1  GATGGAAAGTTCTGAAGACAGACGACGGTGGGCACAGCCACAAAGGTGTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAAGTTCTGAAGACAGACGACGGTGGGCACAGCCACAAAGGTGTG  991

seq1  TGAATGTACTTTACTCGGCCCAACTGGATGGAGAAGAGAAGTTATTAAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTACTTTACTCGGCCCAACTGGATGGAGAAGAGAAGTTATTAAAT  1041

seq1  GGGTGAATTC  1057
      ||||||||||
seq2  GGGTGAATTC  1051