BAC Information

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BAC

Clone NameB6Ng01-103E01
Chromosome17 (Build37)
Map Location 89,068,802 - 89,188,301
singlet/doubletdoublet
Overlap geneGtf2a1lf, Lhcgr
Upstream geneMsh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058, Foxn2, Ccdc128, LOC668866
Downstream geneLOC668867, Fshr, LOC100043904
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103E01.bB6Ng01-103E01.g
ACCDH911901DH911902
length755945
definitionDH911901|Mus musculus domesticus DNA, BAC clone: B6Ng01-103E01, 5' end.DH911902|Mus musculus domesticus DNA, BAC clone: B6Ng01-103E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,187,548 - 89,188,301)(89,068,802 - 89,069,746)
sequence
gaattcgtcatcatccctcagtagatacaaccgagcttcaaacctgtcag
atgctgaaaactgtgccttctgagacctttgtctgatgttcactgtttgg
tttacaaagaacaagaagtgcgtgagtgataattgcttatcactgacaat
gcgatgctggcaatttttcaaagcggagttgttcaaattgttcgtatttc
tcctccccttccatttctcattaaaggtataagtgtttaaaacctaaact
gtgacacaaggaacagcctcccacactttcattggttttggtgggagggg
ggagtaaatagaaaaagggatttaaatttctcttttcctttcttcttatt
agctctaggcaactggtaaggggtaggggagaaatctcaccttgcatgta
gttatattaagatctttgtctctatgacaacagaaaggttgatttgcttg
atatggaaacagcttctgaaaacctgcaagtaagaaaatgctaataataa
ttgtagcaatttatttttctgcatgttgtgcctacttaacagagattaag
cttctagatgttcacttatggcacaatctagaggctctgtaaggagaaag
catgagaacccagcagtgcagtgtgcctgaaactgagcggttgacactgc
tgctagcttgtcactggtctagcacagcatcagtgcagagacaccagaca
cacctgacctggtctggtctggtctgaggaactgatcccaaggagattcg
cccag
gaattcacaggcaaaacggcacttgttagatccatcaaattaaaaatccc
aagttgaaggcaaaaaccactatcaacagatgcccatttccagaaggaca
atgggcagccaagataggtttgtgtctgtaaaagtctgtgtatacagcat
aaaaggttccgtttttagagacatgctcatgtatgttcattttatgtttt
aagaactgtaaagtatggatgcctggatataagctttccacgaataccag
tttgcctgattgttattgccaatgagattttcttcttcttcttttttttt
tttttggagataccggtaaggtggaggtccagactatatatagttttaat
aaagataacatagagaaagcaatataaagtttaacggcggtcctacaaga
gagacatgttcaatacttactacgcttttgaaaaattgtattttattggc
ttcttttggactgctgctgttagactccaagggcaggtcttaaaagatgt
ttttatccctaggggttttccctgcagctcttaagtgtgatcttatagct
gggattaaaacagaagcctcagtttagaagcctttctcagggtagacgga
gaagcagcagctcatctgggggcacttagtcttaatgggtaagcctgtga
acaacatttaaatgttactgattggcctattcatagacttaccctgggtc
tttagaaggattagtttaaattgtgctgctcctggagtgagagtattttt
tgtgggaagcatgaaaagagcagcccgagaaagcctcagttttcatttgg
tctgaattaagcaattgtgaaagcaactggagtcctgtgttactgaatga
tatctgtggtctttgtctgaatctgtctgtgtctctgtctctctccctct
tcccccaagccccccccagctcacacaccacacactctcacacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89187548_89188301
seq2: B6Ng01-103E01.b_43_797 (reverse)

seq1  CTGGGCGAGTCTCC-TGGGATCAGTTCCTCAGACCAGACCAGACCAGGTC  49
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  CTGGGCGAATCTCCTTGGGATCAGTTCCTCAGACCAGACCAGACCAGGTC  50

seq1  AGGTGTGTCTGGTGTCTCTGCACTGATGCTGTGCTAGACCAGTGACAAGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGTCTGGTGTCTCTGCACTGATGCTGTGCTAGACCAGTGACAAGC  100

seq1  TCGCAGCAGTGTCAACCGCTCAGTTTCAGGCACACTGCACTGCTGGGTTC  149
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCAGTGTCAACCGCTCAGTTTCAGGCACACTGCACTGCTGGGTTC  150

seq1  TCATGCTTTCTCCTTACAGAGCCTCTAGATTGTGCCATAAGTGAACATCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTTTCTCCTTACAGAGCCTCTAGATTGTGCCATAAGTGAACATCT  200

seq1  AGAAGCTTAATCTCTGTTAAGTAGGCACAACATGCAGAAAAATAAATTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTAATCTCTGTTAAGTAGGCACAACATGCAGAAAAATAAATTGC  250

seq1  TACAATTATTATTAGCATTTTCTTACTTGCAGGTTTTCAGAAGCTGTTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTATTATTAGCATTTTCTTACTTGCAGGTTTTCAGAAGCTGTTTC  300

seq1  CATATCAAGCAAATCAACCTTTCTGTTGTCATAGAGACAAAGATCTTAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAAGCAAATCAACCTTTCTGTTGTCATAGAGACAAAGATCTTAAT  350

seq1  ATAACTACATGCAAGGTGAGATTTCTCCCCTACCCCTTACCAGTTGCCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTACATGCAAGGTGAGATTTCTCCCCTACCCCTTACCAGTTGCCTA  400

seq1  GAGCTAATAAGAAGAAAGGAAAAGAGAAATTTAAATCCCTTTTTCTATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAATAAGAAGAAAGGAAAAGAGAAATTTAAATCCCTTTTTCTATTT  450

seq1  ACTCCCCCCTCCCACCAAAACCAATGAAAGTGTGGGAGGCTGTTCCTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCCCTCCCACCAAAACCAATGAAAGTGTGGGAGGCTGTTCCTTGT  500

seq1  GTCACAGTTTAGGTTTTAAACACTTATACCTTTAATGAGAAATGGAAGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGTTTAGGTTTTAAACACTTATACCTTTAATGAGAAATGGAAGGG  550

seq1  GAGGAGAAATACGAACAATTTGAACAACTCCGCTTTGAAAAATTGCCAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAATACGAACAATTTGAACAACTCCGCTTTGAAAAATTGCCAGC  600

seq1  ATCGCATTGTCAGTGATAAGCAATTATCACTCACGCACTTCTTGTTCTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCATTGTCAGTGATAAGCAATTATCACTCACGCACTTCTTGTTCTTT  650

seq1  GTAAACCAAACAGTGAACATCAGACAAAGGTCTCAGAAGGCACAGTTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCAAACAGTGAACATCAGACAAAGGTCTCAGAAGGCACAGTTTTC  700

seq1  AGCATCTGACAGGTTTGAAGCTCGGTTGTATCTACTGAGGGATGATGACG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGACAGGTTTGAAGCTCGGTTGTATCTACTGAGGGATGATGACG  750

seq1  AATTC  754
      |||||
seq2  AATTC  755

seq1: chr17_89068802_89069746
seq2: B6Ng01-103E01.g_67_1011

seq1  GAATTCACAGGCAAAACGGCACTTGTTAGATCCATCAAATTAAAAATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGCAAAACGGCACTTGTTAGATCCATCAAATTAAAAATCCC  50

seq1  AAGTTGAAGGCAAAAACCACTATCAACAGATGCCCATTTCCAGAAGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAAGGCAAAAACCACTATCAACAGATGCCCATTTCCAGAAGGACA  100

seq1  ATGGGCAGCCAAGATAGGTTTGTGTCTGTAAAAGTCTGTGTATACAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAGCCAAGATAGGTTTGTGTCTGTAAAAGTCTGTGTATACAGCAT  150

seq1  AAAAGGTTCCGTTTTTAGAGACATGCTCATGTATGTTCATTTTATGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTCCGTTTTTAGAGACATGCTCATGTATGTTCATTTTATGTTTT  200

seq1  AAGAACTGTAAAGTATGGATGCCTGGATATAAGCTTTCCACGAATACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTGTAAAGTATGGATGCCTGGATATAAGCTTTCCACGAATACCAG  250

seq1  TTTGCCTGATTGTTATTGCCAATGAGATTTTCTTCTTCTTCTTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGATTGTTATTGCCAATGAGATTTTCTTCTTCTTCTTTTTTTTT  300

seq1  TTTTTGGAGATACCGGTAAGGTGGAGGTCCAGACTATATATAGTTTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGAGATACCGGTAAGGTGGAGGTCCAGACTATATATAGTTTTAAT  350

seq1  AAAGATAACATAGAGAAAGCAATATAAAGTTTAACGGCGGTCCTACAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAACATAGAGAAAGCAATATAAAGTTTAACGGCGGTCCTACAAGA  400

seq1  GAGACATGTTCAATACTTACTACGCTTTTGAAAAATTGTATTTTATTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATGTTCAATACTTACTACGCTTTTGAAAAATTGTATTTTATTGGC  450

seq1  TTCTTTTGGACTGCTGCTGTTAGACTCCAAGGGCAGGTCTTAAAAGATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGGACTGCTGCTGTTAGACTCCAAGGGCAGGTCTTAAAAGATGT  500

seq1  TTTTATCCCTAGGGGTTTTCCCTGCAGCTCTTAAGTGTGATCTTATAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCCTAGGGGTTTTCCCTGCAGCTCTTAAGTGTGATCTTATAGCT  550

seq1  GGGATTAAAACAGAAGCCTCAGTTTAGAAGCCTTTCTCAGGGTAGACGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAAAACAGAAGCCTCAGTTTAGAAGCCTTTCTCAGGGTAGACGGA  600

seq1  GAAGCAGCAGCTCATCTGGGGGCACTTAGTCTTAATGGGTAAGCCTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGCAGCTCATCTGGGGGCACTTAGTCTTAATGGGTAAGCCTGTGA  650

seq1  ACAACATTTAAATGTTACTGATTGGCCTATTCATAGACTTACCCTGGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATTTAAATGTTACTGATTGGCCTATTCATAGACTTACCCTGGGTC  700

seq1  TTTAGAAGGATTAGTTTAAATTGTGCTGCTCCTGGAGTGAGAGTATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGGATTAGTTTAAATTGTGCTGCTCCTGGAGTGAGAGTATTTTT  750

seq1  TGTGGGAAGCATGAAAAGAGCAGCCCGAGAAAGCCTCAGTTTTCATTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAAGCATGAAAAGAGCAGCCCGAGAAAGCCTCAGTTTTCATTTGG  800

seq1  TCTGAATTAAGCAATTGTGAAAGCAACTGGAGTCCTGTGTTACTGAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTAAGCAATTGTGAAAGCAACTGGAGTCCTGTGTTACTGAATGA  850

seq1  TATCTGTGGTCTTTGTCTGAATCTGTCTGTGTCTCTGTCTCTCTCCCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGGTCTTTGTCTGAATCTGTCTGTGTCTCTGTCTCTCTCCCTCT  900

seq1  TCCCCCAAGCCCCCCCCCAGCTCACACA-CACACACACACACACAC  945
      ||||||||| |||||||||||||||||| ||||||| | |||||||
seq2  TCCCCCAAG-CCCCCCCCAGCTCACACACCACACACTCTCACACAC  945