BAC Information

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BAC

Clone NameB6Ng01-104G05
Chromosome17 (Build37)
Map Location 50,820,094 - 50,918,242
singlet/doubletdoublet
Overlap genePlcl2, EG654432, Tbc1d5
Upstream geneKif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream geneLOC100043451, LOC100043452, Satb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104G05.bB6Ng01-104G05.g
ACCDH912703DH912704
length1,1391,052
definitionDH912703|Mus musculus domesticus DNA, BAC clone: B6Ng01-104G05, 5' end.DH912704|Mus musculus domesticus DNA, BAC clone: B6Ng01-104G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,820,094 - 50,821,235)(50,917,182 - 50,918,242)
sequence
gaattctccgtttcagtatttacatcatgggaagcatgcataggctgaat
acatagaaatggtcgaaattctattttatgtgcttcacgatgctgcattc
agtgagtggggttcaagccctatggttacttgaagggagcataaggcaca
cacttagaaagtgggttatattctagtgtaacttgctgtttatattctgt
cttgtccaaagtccctgacttgtctaaattcagcttcctagctaccagga
ccagaagagcaccatcttcatagtcatgaaactgccatgagcagtctgta
caaaggccaactacagcactgacaccaggtcgtcattcagtgaacagtcg
ctagccttcccagaaggctttgttgtcttgtctctgacataatgtaggct
ttatagcttcagttacttggtaattacaattcagagcccttctgagccac
tttcaattgtggttgaaagaaatgtactgacagctggaacagtggctcag
aactgcccacatttccaggggatccggcttggcgtcccagcacccatgta
acagctcacaactacctgtaattgcagttctgggtgaccaaccctccctt
gggactctgtaggtactgcacacgcatggcccaaagatatgcatacctgc
aggccaaatacccatgcacataaaaataagccgtaaaacactaacagggc
gcattagatagttctcacgacattttaaaaagttcatttatttctctatt
gcaatctttaggttcatagcaaagttgagagcagtgttgggaggtgtccc
acatcctgcctgttgcatgtatcacctcttcatcctccccactagagtga
tgtgctttttgcagtcattgcagagcctccattgacatgccatggttcct
caaagaccataatgcaagctagggttccctcagtgttgtgggtaggatag
atttgaacatctgtattgtctatagcaacgtgctcccattgttccctaca
ccctttttcagttctagagactgaacaaggcttcacacaacattgctaga
caagcactctatctccaagtcccattgccagccttaccattcttaaaggc
atcttgatcgtcacattaaagtgcatgaccttcagggtt
gaattcccagtttttataggccctcagaggggaaaggagaagggggagaa
taggggatttccagatctaaacaatatctattctaaaatgattgattcct
caagaaatgggtatgggagggaaacaagaaaagaatctaataaaggtgca
gcaatgggcacacacctgatcagaacattggcaggcacacaggttcgagg
agtggccagagcattgtgcacctttatttttctaaatcagtgaagccagt
tctactaacaataaaatctattttaccaatttcagggcttctatgacctt
ttacattctgccaggatctttcagcaccacctgatttctcaagacctaca
tatgtagaatacgctaccataatgaagtaggatatgtatgtatttgaaga
gctagaatatgaaaatgataaatgagaaaagcatatagagatttgtttcg
tttgtgttatatttggtggcatctggtttggtctatgatgctagttaatt
acttctgaggataatagtataacataaaattgagaggttgaaccattgga
gaaataggttaagtctaattcctcacatagatatactgtaaattgaatat
actacacataaggtacatagccatggcagtaccagttatcagtcaaaatt
tattatgtctcaacttgaggagaagtggtagtctttcaagagagaaggct
ctttgctcttctaattcagcagttttagtattttagaaaataatgttata
gtcagtggttcccaccacaggagtacatccatgtcccctgggacctgtca
cctggatgactagttctgtccagtatattgaaagtatagatgactgatag
ggatggacactgcaaaatcatacatgtctcatttggcacaatgaactaca
agtctaccactcagccaggaagtgtaaacttgaattatgagtgagtgaaa
gattgtttgataaccctctgaagttgatgttattaaaggaaacagtactc
atttagaaaagttcggcccttaactgaaatctttctcccttgggactcca
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_50820094_50821235
seq2: B6Ng01-104G05.b_47_1185

seq1  GAATTCTCCGTTTCAGTATTTACATCATGGGAAGCATGCATAGGCTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGTTTCAGTATTTACATCATGGGAAGCATGCATAGGCTGAAT  50

seq1  ACATAGAAATGGTCGAAATTCTATTTTATGTGCTTCACGATGCTGCATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAAATGGTCGAAATTCTATTTTATGTGCTTCACGATGCTGCATTC  100

seq1  AGTGAGTGGGGTTCAAGCCCTATGGTTACTTGAAGGGAGCATAAGGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTGGGGTTCAAGCCCTATGGTTACTTGAAGGGAGCATAAGGCACA  150

seq1  CACTTAGAAAGTGGGTTATATTCTAGTGTAACTTGCTGTTTATATTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGAAAGTGGGTTATATTCTAGTGTAACTTGCTGTTTATATTCTGT  200

seq1  CTTGTCCAAAGTCCCTGACTTGTCTAAATTCAGCTTCCTAGCTACCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCAAAGTCCCTGACTTGTCTAAATTCAGCTTCCTAGCTACCAGGA  250

seq1  CCAGAAGAGCACCATCTTCATAGTCATGAAACTGCCATGAGCAGTCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGAGCACCATCTTCATAGTCATGAAACTGCCATGAGCAGTCTGTA  300

seq1  CAAAGGCCAACTACAGCACTGACACCAGGTCGTCATTCAGTGAACAGTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCCAACTACAGCACTGACACCAGGTCGTCATTCAGTGAACAGTCG  350

seq1  CTAGCCTTCCCAGAAGGCTTTGTTGTCTTGTCTCTGACATAATGTAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTTCCCAGAAGGCTTTGTTGTCTTGTCTCTGACATAATGTAGGCT  400

seq1  TTATAGCTTCAGTTACTTGGTAATTACAATTCAGAGCCCTTCTGAGCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCTTCAGTTACTTGGTAATTACAATTCAGAGCCCTTCTGAGCCAC  450

seq1  TTTCAATTGTGGTTGAAAGAAATGTACTGACAGCTGGAACAGTGGCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTGTGGTTGAAAGAAATGTACTGACAGCTGGAACAGTGGCTCAG  500

seq1  AACTGCCCACATTTCCAGGGGATCCGGCTTGGCGTCCCAGCACCCATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCCACATTTCCAGGGGATCCGGCTTGGCGTCCCAGCACCCATGTA  550

seq1  ACAGCTCACAACTACCTGTAATTGCAGTTCTGGGTGACCAACCCTCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCACAACTACCTGTAATTGCAGTTCTGGGTGACCAACCCTCCCTT  600

seq1  GGGACTCTGTAGGTACTGCACACGCATGGCCCAAAGATATGCATACCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCTGTAGGTACTGCACACGCATGGCCCAAAGATATGCATACCTGC  650

seq1  AGGCCAAATACCCATGCACATAAAAATAAGCCGTAAAACACTAACAGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAATACCCATGCACATAAAAATAAGCCGTAAAACACTAACAGGGC  700

seq1  GCATTAGATAGTTCTCACGACATTTTAAAAAGTTCATTTATTTCTCTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAGATAGTTCTCACGACATTTTAAAAAGTTCATTTATTTCTCTATT  750

seq1  GCAATCTTTAGGTTCATAGCAAAGTTGAGAGCAGTGTTGGGAGGTGTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTTTAGGTTCATAGCAAAGTTGAGAGCAGTGTTGGGAGGTGTCCC  800

seq1  ACATCCTGCCTGTTGCATGTATCACCTCTTCATCCTCCCCACTAGAGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTGCCTGTTGCATGTATCACCTCTTCATCCTCCCCACTAGAGTGA  850

seq1  TGTGCTTTTTGCAGTCATTGCAGAGCCTCCATTGACATGCCATGGTTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTTTGCAGTCATTGCAGAGCCTCCATTGACATGCCATGGTTCCT  900

seq1  CAAAGACCATAATGCAAGCTAGGGTTCCCTCAGTGTTGTGGGTAGGATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACCATAATGCAAGCTAGGGTTCCCTCAGTGTTGTGGGTAGGATAG  950

seq1  ATTTGAACAATCTGTATTGTCTATAGCAACGTGCTCCCATTGTTCCCCTA  1000
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  ATTTGAAC-ATCTGTATTGTCTATAGCAACGTGCTCCCATTGTT-CCCTA  998

seq1  CACCCTTTTTCAGTTCTAGAGACTGAACCAGGGCTTCACAC-ACA-TGCT  1048
      ||||||||||||||||||||||||||| || |||||||||| ||| ||||
seq2  CACCCTTTTTCAGTTCTAGAGACTGAA-CAAGGCTTCACACAACATTGCT  1047

seq1  AGACAAGCACTCTATCCCCAAGTCCCATTGCCAGCC-TACCATTCATAAA  1097
      |||||||||||||||| ||||||||||||||||||| |||||||| | ||
seq2  AGACAAGCACTCTATCTCCAAGTCCCATTGCCAGCCTTACCATTC-TTAA  1096

seq1  AGGCATTTTTGATCGTACACATTTAAGTCGCATGA-CTTCATGGTT  1142
      ||||| | |||||||| |||||| |||| |||||| ||||| ||||
seq2  AGGCA-TCTTGATCGT-CACATTAAAGT-GCATGACCTTCAGGGTT  1139

seq1: chr17_50917182_50918242
seq2: B6Ng01-104G05.g_69_1120 (reverse)

seq1  CTTGGAGCTCCCAGGGGAGAAAGATTTCCAGTTATGGGCCTGTACATCTT  50
      ||||||| ||||| ||||||||||||| |||||| ||||| | || | ||
seq2  CTTGGAG-TCCCAAGGGAGAAAGATTT-CAGTTAAGGGCC-GAAC-TTTT  46

seq1  CTAATTGTGTACTGTTTTCCTTTAATAACCATCAATCTCAGAAGGTTAAT  100
      |||| || |||||| ||||||||||||| ||||||  ||||| |||| ||
seq2  CTAAATGAGTACTG-TTTCCTTTAATAA-CATCAACTTCAGAGGGTT-AT  93

seq1  CAATACAATCTTTCACCTCACTCATAATTCAAGTTTACACTTCCTGGCTT  150
      ||| ||||||||||| |||||||||||||||||||||||||||||||| |
seq2  CAA-ACAATCTTTCA-CTCACTCATAATTCAAGTTTACACTTCCTGGC-T  140

seq1  GAGTGGTAGACCTTGTAGTTCATTGTGCCAAATGAGACATGTATGATTTT  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTAGA-CTTGTAGTTCATTGTGCCAAATGAGACATGTATGATTTT  189

seq1  GCAGTGTCCATACCTATCAGTCATCTATACTTTCAATATACTGGACAGAA  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTCCATCCCTATCAGTCATCTATACTTTCAATATACTGGACAGAA  239

seq1  CTAGTCATCCAGGTGACAGGTCCCAGGGGACATGGATGTACTCCTGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCATCCAGGTGACAGGTCCCAGGGGACATGGATGTACTCCTGTGGT  289

seq1  GGGAACCACTGACTATAACATTATTTTCTAAAATACTAAAACTGCTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGGAACCACTGACTATAACATTATTTTCTAAAATACTAAAACTGCTGAAT  339

seq1  TAGAAGAGC-AAGAGCCTTCTCTCTTG-AAGACTACCACTTCTCCTCAAG  398
      ||||||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  TAGAAGAGCAAAGAGCCTTCTCTCTTGAAAGACTACCACTTCTCCTCAAG  389

seq1  TTGAGACATAATAAATTTTGACTGATAACTGGTACTGCCATGGCTATGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACATAATAAATTTTGACTGATAACTGGTACTGCCATGGCTATGTA  439

seq1  CCTTATGTGTAGTATATTCAATTTACAGTATATCTATGTGAGGAATTAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGTGTAGTATATTCAATTTACAGTATATCTATGTGAGGAATTAGA  489

seq1  CTTAACCTATTTCTCCAATGGTTCAACCTCTCAATTTTATGTTATACTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCTATTTCTCCAATGGTTCAACCTCTCAATTTTATGTTATACTAT  539

seq1  TATCCTCAGAAGTAATTAACTAGCATCATAGACCAAACCAGATGCCACCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCAGAAGTAATTAACTAGCATCATAGACCAAACCAGATGCCACCA  589

seq1  AATATAACACAAACGAAACAAATCTCTATATGCTTTTCTCATTTATCATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAACACAAACGAAACAAATCTCTATATGCTTTTCTCATTTATCATT  639

seq1  TTCATATTCTAGCTCTTCAAATACATACATATCCTACTTCATTATGGTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTCTAGCTCTTCAAATACATACATATCCTACTTCATTATGGTAG  689

seq1  CGTATTCTACATATGTAGGTCTTGAGAAATCAGGTGGTGCTGAAAGATCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTCTACATATGTAGGTCTTGAGAAATCAGGTGGTGCTGAAAGATCC  739

seq1  TGGCAGAATGTAAAAGGTCATAGAAGCCCTGAAATTGGTAAAATAGATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAATGTAAAAGGTCATAGAAGCCCTGAAATTGGTAAAATAGATTT  789

seq1  TATTGTTAGTAGAACTGGCTTCACTGATTTAGAAAAATAAAGGTGCACAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTAGTAGAACTGGCTTCACTGATTTAGAAAAATAAAGGTGCACAA  839

seq1  TGCTCTGGCCACTCCTCGAACCTGTGTGCCTGCCAATGTTCTGATCAGGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGCCACTCCTCGAACCTGTGTGCCTGCCAATGTTCTGATCAGGT  889

seq1  GTGTGCCCATTGCTGCACCTTTATTAGATTCTTTTCTTGTTTCCCTCCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCCATTGCTGCACCTTTATTAGATTCTTTTCTTGTTTCCCTCCCA  939

seq1  TACCCATTTCTTGAGGAATCAATCATTTTAGAATAGATATTGTTTAGATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATTTCTTGAGGAATCAATCATTTTAGAATAGATATTGTTTAGATC  989

seq1  TGGAAATCCCCTATTCTCCCCCTTCTCCTTTCCCCTCTGAGGGCCTATAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCCCCTATTCTCCCCCTTCTCCTTTCCCCTCTGAGGGCCTATAA  1039

seq1  AAACTGGGAATTC  1061
      |||||||||||||
seq2  AAACTGGGAATTC  1052