BAC Information

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BAC

Clone NameB6Ng01-105C18
Chromosome17 (Build37)
Map Location 63,659,120 - 63,766,992
singlet/doubletdoublet
Overlap geneFbxl17
Upstream geneEfna5
Downstream genePpia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2, LOC669778, Pja2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105C18.bB6Ng01-105C18.g
ACCDH913266DH913267
length1,165981
definitionDH913266|Mus musculus domesticus DNA, BAC clone: B6Ng01-105C18, 5' end.DH913267|Mus musculus domesticus DNA, BAC clone: B6Ng01-105C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,659,120 - 63,660,294)(63,766,438 - 63,766,992)
sequence
gaattctttccctatctaactaaatggaattttttagttgacatgatttt
taaggtacaattgaagcttaggaaaactgcattctcagagaactgcataa
aaacggctaacatttaaaacaaacaaacaaacaaacaaaacctcactcaa
caatcttgatgactgttagtagaaatttttagcttaagtctattctttca
actctaagcaatcaatctacttttatgcaccctggcagagcacacaagct
aggaaagagagaacctaaagaaaggctctgttagcaccgttttctcatga
actaggatttcaccaatttgttctggggttgcataggctgtcaagtactc
agaaatcaatgtcgtgtattcactgctgtcagtcacagggtgacagtggt
gtaaattaagggaaggcatcttcaagcagagttccatacacttatttcta
aggaatccattttgcagactgatttatgctcttaaaatagacatcctacc
agtgtctgtcgagactctcacaggtatggaattgtctaattgagtatcat
tttcttttataatcaaagtatgttcccatttagcttcaatcacttgtagc
tttaattttaatattttctatacagcaaaaatgagtcaaaagacttcagg
aatagtcccgaataacattatttatttaaatctgtctctactgagatgaa
aattactgagtaaaaatatgtcataacccctgagaatacagcaaacagca
cccctgaagtagtaattcattaccatgatagattgctaaggctttcctaa
gcccagaatgcaacaaaggttttccaaacaagtgaaatagtgactgacta
gaaaattatactcttttaaatacaaaataaccttgttacagtttttgtat
aaggttttttaagaacgtgttgcccctctctttatccatatttccccgat
aacctaagaaagtgatcaaagcacagtcaatacaaatttctgttaggtca
cataaaaagccactctcgtggtggcttcctaaataacagtactacaggag
agactttctgcttagaaggaagataataatacttaaactgtgatttccct
gtttgcttaagcttggtctttattttaataacatgataaatgagcttggc
tttgtgaacttatgg
gaattctcgaaggaggaaactcaagtggctgataaaacttaaagaaaaat
tcagtatccttaatcaagggaacggaaatgaaaactaccttcagatttca
tcttctactcaccagcgtgcccaagaataaacttaagtggcagatttgct
gactaggaaggatgtggggccctgaggatgctcagccactgcttgtggga
gtgcaaacttgtacagccaccatgggaaccagggtgcaaactcctcagga
aggtggggactgacctacgagtagatgcagctgtactactcttgggtgta
aacacaaaggacactttatcctaccacagagacacttgcttaatcatgtt
caatgctgctttagtcataatagccagatattggaaataacctacatatc
tctcaacagaaaatagataaagaaaatggagtagtaatcagaagttaaaa
aaatctgggctgttggtggcaaggcctctgttgctgatgacaagacccat
acaactcactgaacgtaaagaagttgagctggtagccaggcagcagtggc
acacgcctttaattccagcacttgggaggcagaggcaggcagatttctga
gtttgaggccagcctggtctatggagtgagttccaggacagccagggcta
cacacagagaaaccctgtctcgaaaaaacaaaaaacaaaaacaaaacaaa
aaaaaagaaagttgagctggtgcttccatagagcctttgcccgctatggg
gctagtgttcttggtacaggaaggtacttcgagagctaccaaaggagaaa
tgtaacaccagcccagatacagtggtgtcctgcttgcaagaaatgctagg
gcaatggtggtacaaagcgtgtggggagtgactgaccattatctaatttg
agttaaggtccactccatcttaaaatacatgtctcaagcgttacaatttg
ataattagaatgtccgtaccgtaatttttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_63659120_63660294
seq2: B6Ng01-105C18.b_42_1206

seq1  GAATTCTTTCCCTATCTAACTAAATGGAATTTTTTAGTTGACATGATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCTATCTAACTAAATGGAATTTTTTAGTTGACATGATTTT  50

seq1  TAAGGTACAATTGAAGCTTAGGAAAACTGCATTCTCAGAGAACTGCATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTACAATTGAAGCTTAGGAAAACTGCATTCTCAGAGAACTGCATAA  100

seq1  AAACGGCTAACATTTAAAACAAACAAACAAACAAACAAAACCTCACTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGCTAACATTTAAAACAAACAAACAAACAAACAAAACCTCACTCAA  150

seq1  CAATCTTGATGACTGTTAGTAGAAATTTTTAGCTTAAGTCTATTCTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTGATGACTGTTAGTAGAAATTTTTAGCTTAAGTCTATTCTTTCA  200

seq1  ACTCTAAGCAATCAATCTACTTTTATGCACCCTGGCAGAGCACACAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAGCAATCAATCTACTTTTATGCACCCTGGCAGAGCACACAAGCT  250

seq1  AGGAAAGAGAGAACCTAAAGAAAGGCTCTGTTAGCACCGTTTTCTCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAGAGAACCTAAAGAAAGGCTCTGTTAGCACCGTTTTCTCATGA  300

seq1  ACTAGGATTTCACCAATTTGTTCTGGGGTTGCATAGGCTGTCAAGTACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGATTTCACCAATTTGTTCTGGGGTTGCATAGGCTGTCAAGTACTC  350

seq1  AGAAATCAATGTCGTGTATTCACTGCTGTCAGTCACAGGGTGACAGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCAATGTCGTGTATTCACTGCTGTCAGTCACAGGGTGACAGTGGT  400

seq1  GTAAATTAAGGGAAGGCATCTTCAAGCAGAGTTCCATACACTTATTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTAAGGGAAGGCATCTTCAAGCAGAGTTCCATACACTTATTTCTA  450

seq1  AGGAATCCATTTTGCAGACTGATTTATGCTCTTAAAATAGACATCCTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCCATTTTGCAGACTGATTTATGCTCTTAAAATAGACATCCTACC  500

seq1  AGTGTCTGTCGAGACTCTCACAGGTATGGAATTGTCTAATTGAGTATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGTCGAGACTCTCACAGGTATGGAATTGTCTAATTGAGTATCAT  550

seq1  TTTCTTTTATAATCAAAGTATGTTCCCATTTAGCTTCAATCACTTGTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTATAATCAAAGTATGTTCCCATTTAGCTTCAATCACTTGTAGC  600

seq1  TTTAATTTTAATATTTTCTATACAGCAAAAATGAGTCAAAAGACTTCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTAATATTTTCTATACAGCAAAAATGAGTCAAAAGACTTCAGG  650

seq1  AATAGTCCCGAATAACATTATTTATTTAAATCTGTCTCTACTGAGATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCCCGAATAACATTATTTATTTAAATCTGTCTCTACTGAGATGAA  700

seq1  AATTACTGAGTAAAAATATGTCATAACCCCTGAGAATACAGCAAACAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTGAGTAAAAATATGTCATAACCCCTGAGAATACAGCAAACAGCA  750

seq1  CCCCTGAAGTAGTAATTCATTACCATGATAGATTGCTAAGGCTTTCCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGAAGTAGTAATTCATTACCATGATAGATTGCTAAGGCTTTCCTAA  800

seq1  GCCCAGAATGCAACAAAGGTTTTCCAAACAAGTGAAATAGTGACTGACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAATGCAACAAAGGTTTTCCAAACAAGTGAAATAGTGACTGACTA  850

seq1  GAAAATTATACTCTTTTAAATACAAAATAACCTTGTTACAGTTTTTGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTATACTCTTTTAAATACAAAATAACCTTGTTACAGTTTTTGTAT  900

seq1  AAGGTTTTTTAAGAACGTGTTGCCCCTCTCTTTATCCATATTTCCCCGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTTTAAGAACGTGTTGCCCCTCTCTTTATCCATATTTCCCCGAT  950

seq1  AACCTAAGAAAGTGATCAAAAGCACAGTCAATACAAA-TTCTGTTAAGGT  999
      ||||||||||||||||| ||||||||||||||||||| ||||||| ||||
seq2  AACCTAAGAAAGTGATC-AAAGCACAGTCAATACAAATTTCTGTT-AGGT  998

seq1  CACATAAAAAGCCCACTCTCGTGGTGGCTTCCTAAAATAACAGTACTACA  1049
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  CACATAAAAAG-CCACTCTCGTGGTGGCTTCCT-AAATAACAGTACTACA  1046

seq1  GGAGAGAC-TTCTGCTTAGAAGGAAGTATAATTATACCTAAACTGTTGAT  1098
      |||||||| ||||||||||||||||| ||||| |||| ||||||| ||||
seq2  GGAGAGACTTTCTGCTTAGAAGGAAG-ATAATAATACTTAAACTG-TGAT  1094

seq1  TTCTCATGTTTGCTTTAAGGCTTTGTCCTTTATTTTATATAAACACATGA  1148
      ||| | |||||||||  | |||| || |||||||||| |||   ||||||
seq2  TTC-CCTGTTTGCTT--AAGCTTGGT-CTTTATTTTA-ATA---ACATGA  1136

seq1  TAAATGGAGCTTGCTTTTG---ACTTATGG  1175
      ||||| |||||||  ||||   ||||||||
seq2  TAAAT-GAGCTTGGCTTTGTGAACTTATGG  1165

seq1: chr17_63766438_63766992
seq2: B6Ng01-105C18.g_492_1046 (reverse)

seq1  TAAAAAATTACGTAACTGTACATTCTTAATTTTACAAATTGTTAACGCTT  50
      ||||||||||||  || | |||||| ||||| | ||||||| ||||||||
seq2  TAAAAAATTACGGTAC-GGACATTC-TAATTAT-CAAATTG-TAACGCTT  46

seq1  GAGACATGTATTTTAAGATGGAGTGGACCTTAACTCAAATTAGATATTGG  100
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGACATGTATTTTAAGATGGAGTGGACCTTAACTCAAATTAGATAATGG  96

seq1  TCAGTCACT-CCCACACGCTTTGTACCACCATTGCCCTAGCATTTCTTGC  149
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCACTCCCCACACGCTTTGTACCACCATTGCCCTAGCATTTCTTGC  146

seq1  AAGCAGGACACCACTGTATCTGGGCTGGTGTTTACATTTCTCCTTTGGTA  199
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGCAGGACACCACTGTATCTGGGCTGGTG-TTACATTTCTCCTTTGGTA  195

seq1  GCTCTCGAAGTACCTTCCTGTACCAAGAACACTAG-CCCATAGCGGGCAA  248
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCTCTCGAAGTACCTTCCTGTACCAAGAACACTAGCCCCATAGCGGGCAA  245

seq1  AGGCTCTATGGAAGCACCAGCTCAAC-TTCTTTTTTTTTGTTTTGTTTTT  297
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGCTCTATGGAAGCACCAGCTCAACTTTCTTTTTTTTTGTTTTGTTTTT  295

seq1  GTTTTT--GTTTTTCGAGACAGGGTTTCTCTGTGTGTAGCCCTGGCTGTC  345
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTTTTTCGAGACAGGGTTTCTCTGTGTGTAGCCCTGGCTGTC  345

seq1  CTGGAACTCACTCCATAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCACTCCATAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCT  395

seq1  GCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCGTGTGCCACTGCTGCCTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCGTGTGCCACTGCTGCCTG  445

seq1  GCTACCAGCTCAACTTCTTTACGTTCAGTGAGTTGTATGGGTCTTGTCAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCAGCTCAACTTCTTTACGTTCAGTGAGTTGTATGGGTCTTGTCAT  495

seq1  CAGCAACAGAGGCCTTGCCACCAACAGCCCAGATTTTTTTAACTTCTGAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACAGAGGCCTTGCCACCAACAGCCCAGATTTTTTTAACTTCTGAT  545

seq1  TACTACTCCA  555
      ||||||||||
seq2  TACTACTCCA  555