BAC Information

Click to search

BAC

Clone NameB6Ng01-105D09
Chromosome17 (Build37)
Map Location 42,286,675 - 42,432,802
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC627577
Downstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105D09.bB6Ng01-105D09.g
ACCDH913294DH913295
length1,1961,109
definitionDH913294|Mus musculus domesticus DNA, BAC clone: B6Ng01-105D09, 5' end.DH913295|Mus musculus domesticus DNA, BAC clone: B6Ng01-105D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,286,675 - 42,287,881)(42,431,682 - 42,432,802)
sequence
gaattcacctgagagcagcttcccaataaacctgtctttaatatattcta
atatgaattgactcatttcactggcagagaactatcttatcagttgtatc
aatacaagataactttttttataaggattaactaaatgaggcaacaaaat
tatttgtgtgctcctgtgcatggaaaagcacatgcaatggcacctgtaaa
gatgagaggacaacctcagatgtcttccctcacctttcatggggtcactt
gttgctactgcataagccccaatactgctccactagtccctggctaaatg
tttcctcctctcatgagcaagtcaagtgactgatatgatagaactacaga
tgcatcccactcaaattcatatgtgtgctgaggctatgaacttattcatc
agacacgacaagagctttacaaccgattccctgcataaaatgcattttga
gaaataacaactttaacaaggacaaatggatcgcatttcaatggactttg
cttgagttagaacatccagagtttgactcacagagctagctgtaagggag
agaaggggctttttgatatgtgcattgtaggttcagtcaaaatgaataaa
tggtttgtctatggtgaatgagaacacatttacagaaagcatcctcccag
aggctttccttagacttatggaagctctctcaaactgtagtgagtcatag
ggattatttcacctgtgtgactctcctgctgagtcctctgccttgccaac
tctgtgatgatcataaaactgttactctgcttaagttataatagatagtg
tgtatcaaaaaatagatcatggttaatagcaacatttcccaaggaggcca
tttctatctcaaattatatttgctacaaggaaagcatagaatgaatcaca
atgaagagaggatatgcatcgagggataaaaaaagctctgaccattcttc
cagtctgcataattagggagtgttcctgagtaatggatagtggttttatg
caacacacgggaacagtttgggagatttttatcatctctacttgcaaatc
agcacttcaaacaggacttctagtgttcacttactatggcatgtgatatg
actgaggccagtgtcctacccagcagtggttcttgacccctgggatctat
ggctggaaaacatgcctgcagcgaataccggggtctcacctgtggg
gaattctatgaccaacattaaatataaaaggtaaatatggtctttccatg
acatcacagtagggtgtagcaagaagggactttagagattcttattgaga
tgcataatagcatggttgtatccctaattgcttcattctatactgagtgc
aggagtcaaaggcaaaagcttccactttcaaaagaaaacaggtacataaa
atggtagaaaggcaaactaaaaatatggatagaacttgtgttagtgattg
cctggagaatgacacagggtaggatgtactagtatgagtcaccaggaaca
tttttttcatggagaagctcattatcttctttttccccagtgctgtggac
taaacaggaagccttgtgcttgctaagcaaacaatcttcctctgcgctaa
atcttgatgtgttgctgacacgtgcacatgtcaaaacagcaaatttctca
ctctctctctctctttctttctttccctctctctttctctctccgtccct
ccctccctccctccctctctctctctttctctctctctctctttctctct
ctctctctctctctctcttgtacacacacacacacacacacacacacaca
cacacacacacacacacaccacagtccacagtgaaaccgattttaaaaga
gggcaatatgtatggtattaaatctactgcgtgcaaaatgtgtattagtt
tttggcaaatgcttccttggatcgcacttaagaatgtctgactcttttaa
aaccggtcgttctttttatgccaaacagagaaaataaattgaatgatggc
taccaaagaatacaactgttccactttcaatgaagcatggagttctgcat
ttcattggtccaacaaaaaaggttatgcctttgttgatgctaatatccga
tattgaaattagaatttattatatcccacaaaatggtaataaaaatatgc
tacttttcacacactaggaagatgaagttactaaaatacttccatatctt
tttggccattggacaaaattcgaggaatccaaggacgtaggattggtctc
tctccctggagcttgaaacgacgataattgatacatattggagaaaatag
aaataaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42286675_42287881
seq2: B6Ng01-105D09.b_47_1242

seq1  GAATTCACCTGAGAGCAGCTTCCCAATAAACCTGTCTTTAATATATTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGAGAGCAGCTTCCCAATAAACCTGTCTTTAATATATTCTA  50

seq1  ATATGAATTGACTCATTTCACTGGCAGAGAACTATCTTATCAGTTGTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATTGACTCATTTCACTGGCAGAGAACTATCTTATCAGTTGTATC  100

seq1  AATACAAGATAACTTTTTTTATAAGGATTAACTAAATGAGGCAACAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAGATAACTTTTTTTATAAGGATTAACTAAATGAGGCAACAAAAT  150

seq1  TATTTGTGTGCTCCTGTGCATGGAAAAGCACATGCAATGGCACCTGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGTGCTCCTGTGCATGGAAAAGCACATGCAATGGCACCTGTAAA  200

seq1  GATGAGAGGACAACCTCAGATGTCTTCCCTCACCTTTCATGGGGTCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAGGACAACCTCAGATGTCTTCCCTCACCTTTCATGGGGTCACTT  250

seq1  GTTGCTACTGCATAAGCCCCAATACTGCTCCACTAGTCCCTGGCTAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTACTGCATAAGCCCCAATACTGCTCCACTAGTCCCTGGCTAAATG  300

seq1  TTTCCTCCTCTCATGAGCAAGTCAAGTGACTGATATGATAGAACTACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCTCTCATGAGCAAGTCAAGTGACTGATATGATAGAACTACAGA  350

seq1  TGCATCCCACTCAAATTCATATGTGTGCTGAGGCTATGAACTTATTCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCCACTCAAATTCATATGTGTGCTGAGGCTATGAACTTATTCATC  400

seq1  AGACACGACAAGAGCTTTACAACCGATTCCCTGCATAAAATGCATTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACGACAAGAGCTTTACAACCGATTCCCTGCATAAAATGCATTTTGA  450

seq1  GAAATAACAACTTTAACAAGGACAAATGGATCGCATTTCAATGGACTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAACAACTTTAACAAGGACAAATGGATCGCATTTCAATGGACTTTG  500

seq1  CTTGAGTTAGAACATCCAGAGTTTGACTCACAGAGCTAGCTGTAAGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTAGAACATCCAGAGTTTGACTCACAGAGCTAGCTGTAAGGGAG  550

seq1  AGAAGGGGCTTTTTGATATGTGCATTGTAGGTTCAGTCAAAATGAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGGCTTTTTGATATGTGCATTGTAGGTTCAGTCAAAATGAATAAA  600

seq1  TGGTTTGTCTATGGTGAATGAGAACACATTTACAGAAAGCATCCTCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGTCTATGGTGAATGAGAACACATTTACAGAAAGCATCCTCCCAG  650

seq1  AGGCTTTCCTTAGACTTATGGAAGCTCTCTCAAACTGTAGTGAGTCATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTCCTTAGACTTATGGAAGCTCTCTCAAACTGTAGTGAGTCATAG  700

seq1  GGATTATTTCACCTGTGTGACTCTCCTGCTGAGTCCTCTGCCTTGCCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATTTCACCTGTGTGACTCTCCTGCTGAGTCCTCTGCCTTGCCAAC  750

seq1  TCTGTGATGATCATAAAACTGTTACTCTGCTTAAGTTATAATAGATAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATGATCATAAAACTGTTACTCTGCTTAAGTTATAATAGATAGTG  800

seq1  TGTATCAAAAAATAGATCATGGTTAATAGCAACA-TTCCCAAGGAGGCCA  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGTATCAAAAAATAGATCATGGTTAATAGCAACATTTCCCAAGGAGGCCA  850

seq1  TTTCTATCTCAAATTATATTTGCTACAAGGAAAGCATAGAATGAATCACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCTCAAATTATATTTGCTACAAGGAAAGCATAGAATGAATCACA  900

seq1  ATGAAGAGAGGAAATGCATCGAGGGATAAAAAAAGCTCTGACCA-TCTTC  948
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  ATGAAGAGAGGATATGCATCGAGGGATAAAAAAAGCTCTGACCATTCTTC  950

seq1  CAAGTCTGCATAATTAGGGAGTGTTCCTGAGTAATGGATAGTGGTTTTAT  998
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AGTCTGCATAATTAGGGAGTGTTCCTGAGTAATGGATAGTGGTTTTAT  999

seq1  GCAACACACGGGAACAGTTTGGGAGATTTTTATCATCTCTACCTTGCAAA  1048
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCAACACACGGGAACAGTTTGGGAGATTTTTATCATCTCTA-CTTGCAAA  1048

seq1  TCAGCACTTTCAAACAGGACTTCTAAGTTGTTTCACTTACTATTGCATGT  1098
      ||||||| |||||||||||||||| |||   |||||||||||| ||||| 
seq2  TCAGCAC-TTCAAACAGGACTTCT-AGT--GTTCACTTACTATGGCATG-  1093

seq1  TGATATGACTGAGGCCAGTGTCCCTACACCAGCAGTTGTTCTTGACCCCT  1148
      ||||||||||||||||||||| ||||| |||||||| |||||||||||||
seq2  TGATATGACTGAGGCCAGTGT-CCTAC-CCAGCAGTGGTTCTTGACCCCT  1141

seq1  GGTTTTCATTGCTCTGAAAACATAGCCTGCAGCCAGATCAGGGGTTCTCA  1198
      ||  |  || |||  |||||||| ||||||||| | ||   ||| |||| 
seq2  GGGATCTATGGCT-GGAAAACAT-GCCTGCAGCGA-ATACCGGGGTCTC-  1187

seq1  ACCTGTGGG  1207
      |||||||||
seq2  ACCTGTGGG  1196

seq1: chr17_42431682_42432802
seq2: B6Ng01-105D09.g_71_1179 (reverse)

seq1  TATTTATTTGCTTATTTTCCTCAATATGTATCAATCTATCATCTGTCTCA  50
      |||||||||   |||||||  |||||||||||||| |||| || || |||
seq2  TATTTATTT--CTATTTTCTCCAATATGTATCAAT-TATCGTC-GTTTCA  46

seq1  AGCTTCCAGGGAGAAGAGACCACATCCTACGTACCTTTGAATCCTCGAAA  100
      ||| ||||||||| |||||||| ||||||||| |||| || |||||| ||
seq2  AGC-TCCAGGGAG-AGAGACCA-ATCCTACGT-CCTTGGATTCCTCG-AA  91

seq1  TCTTGTACAGAATGAGCAAAAAGATATTGTAAGTATTTTTAGTAACTTCA  150
      | |||| |  ||||  |||||||||| || ||||| ||||||||||||||
seq2  TTTTGTCC--AATGGCCAAAAAGATA-TGGAAGTA-TTTTAGTAACTTCA  137

seq1  TCTTTTCTAGTGTGTGAAATGTAGCATATTTTTATTACCATTTTGTGGGA  200
      || || ||||||||||||| ||||||||||||||||||||||||||||||
seq2  TC-TTCCTAGTGTGTGAAAAGTAGCATATTTTTATTACCATTTTGTGGGA  186

seq1  TAT-ATGAATTCTAATTTCATGATCGGATATTTAGCATCAACAAGTGCAT  249
      ||| || |||||||||||||  |||||||| |||||||||||||  ||||
seq2  TATAATAAATTCTAATTTCAATATCGGATA-TTAGCATCAACAAAGGCAT  235

seq1  AACCTTTTCTGTTGGACCAATGAACTGCAGAACTCCATGCTTCATTG-AA  298
      |||||||| ||||||||||||||| |||||||||||||||||||||| ||
seq2  AACCTTTTTTGTTGGACCAATGAAATGCAGAACTCCATGCTTCATTGAAA  285

seq1  GTGGAACAGTTGTATTCTTTGGTAGCCATCATTACAATTTATTTTCTCTG  348
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTGGAACAGTTGTATTCTTTGGTAGCCATCATT-CAATTTATTTTCTCTG  334

seq1  TTTGGCATAAAAAGAACGACCGGTTTT-AAAGAGTCAGACATTCTTAAGT  397
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTGGCATAAAAAGAACGACCGGTTTTAAAAGAGTCAGACATTCTTAAGT  384

seq1  GCGATCCAAGGATGCATTTGCC-AAAACTAATACACATTTTGCACGCAGT  446
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  GCGATCCAAGGAAGCATTTGCCAAAAACTAATACACATTTTGCACGCAGT  434

seq1  AGATTTAATACCATACATATTGCCCTCTTTTAAAATCGGTTTCACTGTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAATACCATACATATTGCCCTCTTTTAAAATCGGTTTCACTGTGG  484

seq1  ACTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  534

seq1  GTGTACAAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACAAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAAA  584

seq1  GAGAGAGAGAGGGAGGGAGGGAGGGAGGGACGGAGAGAGAAAGAGAGAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGGGAGGGAGGGAGGGAGGGACGGAGAGAGAAAGAGAGAGG  634

seq1  GAAAGAAAGAAAGAGAGAGAGAGAGTGAGAAATTTGCTGTTTTGACATGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAGAGAGAGAGAGTGAGAAATTTGCTGTTTTGACATGT  684

seq1  GCACGTGTCAGCAACACATCAAGATTTAGCGCAGAGGAAGATTGTTTGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTGTCAGCAACACATCAAGATTTAGCGCAGAGGAAGATTGTTTGCT  734

seq1  TAGCAAGCACAAGGCTTCCTGTTTAGTCCACAGCACTGGGGAAAAAGAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGCACAAGGCTTCCTGTTTAGTCCACAGCACTGGGGAAAAAGAAG  784

seq1  ATAATGAGCTTCTCCATGAAAAAAATGTTCCTGGTGACTCATACTAGTAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAGCTTCTCCATGAAAAAAATGTTCCTGGTGACTCATACTAGTAC  834

seq1  ATCCTACCCTGTGTCATTCTCCAGGCAATCACTAACACAAGTTCTATCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACCCTGTGTCATTCTCCAGGCAATCACTAACACAAGTTCTATCCA  884

seq1  TATTTTTAGTTTGCCTTTCTACCATTTTATGTACCTGTTTTCTTTTGAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAGTTTGCCTTTCTACCATTTTATGTACCTGTTTTCTTTTGAAA  934

seq1  GTGGAAGCTTTTGCCTTTGACTCCTGCACTCAGTATAGAATGAAGCAATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGCTTTTGCCTTTGACTCCTGCACTCAGTATAGAATGAAGCAATT  984

seq1  AGGGATACAACCATGCTATTATGCATCTCAATAAGAATCTCTAAAGTCCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATACAACCATGCTATTATGCATCTCAATAAGAATCTCTAAAGTCCC  1034

seq1  TTCTTGCTACACCCTACTGTGATGTCATGGAAAGACCATATTTACCTTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTACACCCTACTGTGATGTCATGGAAAGACCATATTTACCTTTT  1084

seq1  ATATTTAATGTTGGTCATAGAATTC  1121
      |||||||||||||||||||||||||
seq2  ATATTTAATGTTGGTCATAGAATTC  1109