BAC Information

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BAC

Clone NameB6Ng01-106C18
Chromosome17 (Build37)
Map Location 46,958,611 - 47,129,377
singlet/doubletdoublet
Overlap geneBC032203, A330017A19Rik, Tbcc, Prph2, Ubr2
Upstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1
Downstream geneLOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106C18.bB6Ng01-106C18.g
ACCDH913988DH913989
length471901
definitionDH913988|Mus musculus domesticus DNA, BAC clone: B6Ng01-106C18, 5' end.DH913989|Mus musculus domesticus DNA, BAC clone: B6Ng01-106C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,958,611 - 46,959,087)(47,128,478 - 47,129,377)
sequence
tgcaaacctatacacacacacacacacacacacacacacacacacacaca
cagaaaacaaggactggtgagatctcagctagttagggcacttgctgcca
agcctgaaccgagtctgcttcccggggcccaggtactgtgaggagagacc
ccaccagctctcctctgacccccaaggtgcttatggtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgggtgtgaaagagagggcgggcgcgctca
aaagagagaggggggggggggggggggagtgtatatgagatctgttggag
gctctagagcctggcgctgacgtgaggaaaggaaaggacctcccttctgc
cgccctgggtggctgaggagtgaggctgaacggatcacagcctctgggat
tgctccttcctcttccaggagacctggctttccatttcctagtttttaac
gtttttgggcgttttgcctgt
gaattccaggacagccaaggctatacagagaaatcctgtctcgaaaaaaa
aggtgggacgagcctatgctgcttggaactcgaagagttaagaaagataa
cccagaaatcaggcttccacatcagcgtcaaccagtttgatctgatattt
taaatgataaatagaggcctgtggtgatggatcattcagggccacctcca
gcacctaagactctggatagttttattatgggcagatgaccctgccctgc
ccttcttcctctactaggaatgggagctggtgcatctggactcagacagt
aagggacagttgttaaaaggaacccctgctctcaggggaagataaaatgg
tgggaggagccctagtcctgttcttaattagggagctactgggtcagggc
ctttccaccagtttatttttgttcactctagcccggtgtcaatgataata
ggaaaagaaaaggggccatatataaaatcagttgtcttattctcatagac
cagggaccagggagaggcactccaggtcccttcagaatctcgggctggtg
tttcgtacagagcatgtgtaacagccagagcagggctgcctacccgtgtg
tcttggcccacatctgcatctcctgagaataagtgggatgtgcagtctgg
cgttgatggtgctgtaatacagagcacacaaatgcttacttggggcagaa
tagaatagaatttattctgaaatttggtacacttgattttacccatccct
aacgctttttttgattttgttggtgatgttgggttttggtggcatttttt
aaaagcagaatttctgatgtgccaccgactagcctgtaggtctgtcttgc
agccttagtaactagttactcagcttaagaaagtgtggactaattaatga
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_46958611_46959087
seq2: B6Ng01-106C18.b_42_518

seq1  GAATTCTGCAAACCTATACACACACACACACACACACACACACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAAACCTATACACACACACACACACACACACACACACACACA  50

seq1  CACACACAGAAAACAAGGACTGGTGAGATCTCAGCTAGTTAGGGCACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAGAAAACAAGGACTGGTGAGATCTCAGCTAGTTAGGGCACTTG  100

seq1  CTGCCAAGCCTGAACCGAGTCTGCTTCCCGGGGCCCAGGTACTGTGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGCCTGAACCGAGTCTGCTTCCCGGGGCCCAGGTACTGTGAGGA  150

seq1  GAGACCCCACCAGCTCTCCTCTGACCCCCAAGGTGCTTATGGTGTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCCACCAGCTCTCCTCTGACCCCCAAGGTGCTTATGGTGTGTGTG  200

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTACTGCCCCCAAAATAA--TCAAGTG  248
      |||||||||||||||||||||||||   |     |||   |   |  | |
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGGGTGTGAAAGAGAGGGCGGGCG  250

seq1  TGCTAAGAAACAAATCAGCAGGTGAGAACAACAGCAAGGT-CAGGAGAGT  297
       ||| | ||| | |  ||  || | |       | |  ||  | |||| |
seq2  CGCTCA-AAAGAGA-GAGGGGGGGGGGGGGGGGGGAGTGTATATGAGA-T  297

seq1  CTGTTGGAGGCTCTAGAGCCTGGCGCTGACGTGAGGAAAGGAAAGGACCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGAGGCTCTAGAGCCTGGCGCTGACGTGAGGAAAGGAAAGGACCT  347

seq1  CCCTTCTGCCGCCCTGGGTGGCTGAGGAGTGAGGCTGAACGGATCACAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTGCCGCCCTGGGTGGCTGAGGAGTGAGGCTGAACGGATCACAGC  397

seq1  CTCTGGGATGGCTCCTTCCTCTTCCAGGAGACCTGGCTTTCCATTTCCTA  447
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGATTGCTCCTTCCTCTTCCAGGAGACCTGGCTTTCCATTTCCTA  447

seq1  GTTTTTAACGTATTTGGGCGTTTTGCCTGT  477
      ||||||||||| ||||||||||||||||||
seq2  GTTTTTAACGTTTTTGGGCGTTTTGCCTGT  477

seq1: chr17_47128478_47129377
seq2: B6Ng01-106C18.g_67_967 (reverse)

seq1  TTCATTACTTAGT-CACACTTTCTTAAGCTGAGTAACTAGTTACTAAGGC  49
      ||||||| ||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCATTAATTAGTCCACACTTTCTTAAGCTGAGTAACTAGTTACTAAGGC  50

seq1  TGGCAAGACAGACCTACAGGCTAGTCGGTGGCACATCAGAAATTCTGCTT  99
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-GCAAGACAGACCTACAGGCTAGTCGGTGGCACATCAGAAATTCTGCTT  99

seq1  TTAAAAAAGTGCCACC-AAACCCAACATCACCAACAAAATCAAAAAAAGC  148
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  TTAAAAAA-TGCCACCAAAACCCAACATCACCAACAAAATCAAAAAAAGC  148

seq1  GTTAGGGATGGGTAAAATCAAGTGTACCAAATTTCAGAATAAATTCTATT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGATGGGTAAAATCAAGTGTACCAAATTTCAGAATAAATTCTATT  198

seq1  CTATTCTG-CCCAAGTAAGCATTTGTGTGCTCTGTATTACAGCACCATCA  247
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTGCCCCAAGTAAGCATTTGTGTGCTCTGTATTACAGCACCATCA  248

seq1  ACGCCAGACTGCACATCCCACTTATTCTCAGGAGATGCAGATGTGGGCCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCAGACTGCACATCCCACTTATTCTCAGGAGATGCAGATGTGGGCCA  298

seq1  AGACACACGGGTAGGCAGCCCTGCTCTGGCTGTTACACATGCTCTGTACG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACGGGTAGGCAGCCCTGCTCTGGCTGTTACACATGCTCTGTACG  348

seq1  AAACACCAGCCCGAGATTCTGAAGGGACCTGGAGTGCCTCTCCCTGGTCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCAGCCCGAGATTCTGAAGGGACCTGGAGTGCCTCTCCCTGGTCC  398

seq1  CTGGTCTATGAGAATAAGACAACTGATTTTATATATGGCCCCTTTTCTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTATGAGAATAAGACAACTGATTTTATATATGGCCCCTTTTCTTT  448

seq1  TCCTATTATCATTGACACCGGGCTAGAGTGAACAAAAATAAACTGGTGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTATCATTGACACCGGGCTAGAGTGAACAAAAATAAACTGGTGGA  498

seq1  AAGGCCCTGACCCAGTAGCTCCCTAATTAAGAACAGGACTAGGGCTCCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCTGACCCAGTAGCTCCCTAATTAAGAACAGGACTAGGGCTCCTC  548

seq1  CCACCATTTTATCTTCCCCTGAGAGCAGGGGTTCCTTTTAACAACTGTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATTTTATCTTCCCCTGAGAGCAGGGGTTCCTTTTAACAACTGTCC  598

seq1  CTTACTGTCTGAGTCCAGATGCACCAGCTCCCATTCCTAGTAGAGGAAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGTCTGAGTCCAGATGCACCAGCTCCCATTCCTAGTAGAGGAAGA  648

seq1  AGGGCAGGGCAGGGTCATCTGCCCATAATAAAACTATCCAGAGTCTTAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGGCAGGGTCATCTGCCCATAATAAAACTATCCAGAGTCTTAGG  698

seq1  TGCTGGAGGTGGCCCTGAATGATCCATCACCACAGGCCTCTATTTATCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGGTGGCCCTGAATGATCCATCACCACAGGCCTCTATTTATCAT  748

seq1  TTAAAATATCAGATCAAACTGGTTGACGCTGATGTGGAAGCCTGATTTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATCAGATCAAACTGGTTGACGCTGATGTGGAAGCCTGATTTCT  798

seq1  GGGTTATCTTTCTTAACTCTTCGAGTTCCAAGCAGCATAGGCTCGTCCCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATCTTTCTTAACTCTTCGAGTTCCAAGCAGCATAGGCTCGTCCCA  848

seq1  CCTTTTTTTTCGAGACAGGATTTCTCTGTATAGCCTTGGCTGTCCTGGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTTCGAGACAGGATTTCTCTGTATAGCCTTGGCTGTCCTGGAA  898

seq1  TTC  900
      |||
seq2  TTC  901