BAC Information

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BAC

Clone NameB6Ng01-106D14
Chromosome17 (Build37)
Map Location 43,616,608 - 43,732,652
singlet/doubletdoublet
Overlap geneMep1a, LOC100043332, Pla2g7
Upstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116
Downstream geneTdrd6, Slc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4, Clic5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106D14.bB6Ng01-106D14.g
ACCDH914022DH914023
length1,1341,089
definitionDH914022|Mus musculus domesticus DNA, BAC clone: B6Ng01-106D14, 5' end.DH914023|Mus musculus domesticus DNA, BAC clone: B6Ng01-106D14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,616,608 - 43,617,768)(43,731,557 - 43,732,652)
sequence
gaattccatcaaatagacattttaggagtcaaaaatcaaacaaagggtac
attccatggttcatcctttgacatgttgccaaaaatctgtttgtctagac
tttttcttgtacatttgggaattctggtgtagaggagactgaggaatcca
gggttagccgaagccagtgactgttctaagagcagactagatctatttgc
ttttcgctgaggctgaactggaagtgggaggtttgaacaaaaaccttagg
aaagggaatgaggggcccatctagagtatggaagcctgagatgaacagca
cgagagagaagccaaggggtaatggggagaagtactaggagagagtaatt
cagaatgtcccaaacctaggcaaacaaagtcttaaatgaagttgaaaggg
gacccgattggtgtcccctctcctcccctgcatcttctagtcagagctaa
gcttttcccagaacaaaagcctgggcattcctcttgtcctctggtccttc
taaggctaaccatggagacaagctcccgggtggagctggtcacagttgct
cagacacataagacaaagctgaaaggatgcatggaccacatcagtaacct
ggcaatctatgtagctgtcaacttttgcatgaggacacatgaactggaaa
tatgatgggtgacttaaagcctaagacggggacaaaaacacagacatgaa
ccaagcactcagcagattccagatcatgggacttccaatgagagaatgaa
agttcacttcttgcttccgagtaaccgcttcactcttatgttttgagctt
ggaatgtgggtcagggtagtagtagacagaccctagacactgggccacat
gagcacagactttttagatgagattttcaagtttttacctaagtgatagg
tttccctgaatcagtggtagtgatacctcgattgtttgagccaacttgtc
tgtggtagttcagaaggcatctattaaagtctggcctcactataaacata
gctgtgtatatatacatatgtgagcatgtttacacttctattgtatgtaa
catcttgtatagtttattattaaatctaagactatattttgcacgtgata
gtaaatcatagaccgttatgtatcatagatttgg
gaattctcccctaattaaccgaataataaagatggaaagaagccaatccc
tgggtgaggagttggagagccttctgggtcctagagaggaagagggagtg
caggaggagggcacttccttttggatggaggggggcatttagtggcttct
acattttgtggccggaacagagaaccaagggtcaggtataagatgttaag
gcaagcctgacatccccatcccatcccatcccattaaactctgagtgtat
aatgataaaggacctttgcttccctcagtgttgcctaattccttaagaaa
tcccgtctttctggttagggagatcactcaacttggaaagcgtttgcctt
gcatgtggtggtataaaaacaccaggcacacacctgtgagcccagtcctg
gggagtctgagccaggaggctccctggggcttgctgataagttagcctag
cctagctgatgagccccaggctactgacagaccctgcctcataggagggt
aggttgactatgtttctgagaaatcacacctcaggttgtcttctggactc
cacatgaatgtacactcatgtgcagaagaacacacccatacacagtcttt
aaaaaaaaaaagaaaaagataagaaaataaaagaaatcacacccttacca
tcttagaaaacccacctcagtcttactacttgtaactcttgtttccaaca
tatctacgtatgcaaatctacatatgcaaccatagatagatgtgcatata
acttcacaccaggaccaagagaaatcttaccatataagaggtgtaaaata
ttgcctacaatactgggtttccaagaaatatactaaagacccaaaaaata
ttctttgtttgggatcaaacagtgtcgaggcgacccttgatctgagctgg
gttagtacaacgcacgagacgctctgttgggaaaaaacaatgacagactt
tcagtctaggggagtccagtaagtgcagtgccttcatatgtttattacca
gatccctgtctttcccttaaagttctagggatgttcagcttgctgagtga
ctggatttatcacaaagggattgctctagtagagaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_43616608_43617768
seq2: B6Ng01-106D14.b_45_1178

seq1  GAATTCCATCAAATAGACATTTTAGGAGTCAAAAATCAAACAAAGGGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAAATAGACATTTTAGGAGTCAAAAATCAAACAAAGGGTAC  50

seq1  ATTCCATGGTTCATCCTTTGACATGTTGCCAAAAATCTGTTTGTCTAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGGTTCATCCTTTGACATGTTGCCAAAAATCTGTTTGTCTAGAC  100

seq1  TTTTTCTTGTACATTTGGGAATTCTGGTGTAGAGGAGACTGAGGAATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTGTACATTTGGGAATTCTGGTGTAGAGGAGACTGAGGAATCCA  150

seq1  GGGTTAGCCGAAGCCAGTGACTGTTCTAAGAGCAGACTAGATCTATTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAGCCGAAGCCAGTGACTGTTCTAAGAGCAGACTAGATCTATTTGC  200

seq1  TTTTCGCTGAGGCTGAACTGGAAGTGGGAGGTTTGAACAAAAACCTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGCTGAGGCTGAACTGGAAGTGGGAGGTTTGAACAAAAACCTTAGG  250

seq1  AAAGGGAATGAGGGGCCCATCTAGAGTATGGAAGCCTGAGATGAACAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAATGAGGGGCCCATCTAGAGTATGGAAGCCTGAGATGAACAGCA  300

seq1  CGAGAGAGAAGCCAAGGGGTAATGGGGAGAAGTACTAGGAGAGAGTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGAGAAGCCAAGGGGTAATGGGGAGAAGTACTAGGAGAGAGTAATT  350

seq1  CAGAATGTCCCAAACCTAGGCAAACAAAGTCTTAAATGAAGTTGAAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTCCCAAACCTAGGCAAACAAAGTCTTAAATGAAGTTGAAAGGG  400

seq1  GACCCGATTGGTGTCCCCTCTCCTCCCCTGCATCTTCTAGTCAGAGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGATTGGTGTCCCCTCTCCTCCCCTGCATCTTCTAGTCAGAGCTAA  450

seq1  GCTTTTCCCAGAACAAAAGCCTGGGCATTCCTCTTGTCCTCTGGTCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCCCAGAACAAAAGCCTGGGCATTCCTCTTGTCCTCTGGTCCTTC  500

seq1  TAAGGCTAACCATGGAGACAAGCTCCCGGGTGGAGCTGGTCACAGTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTAACCATGGAGACAAGCTCCCGGGTGGAGCTGGTCACAGTTGCT  550

seq1  CAGACACATAAGACAAAGCTGAAAGGATGCATGGACCACATCAGTAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACATAAGACAAAGCTGAAAGGATGCATGGACCACATCAGTAACCT  600

seq1  GGCAATCTATGTAGCTGTCAACTTTTGCATGAGGACACATGAACTGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCTATGTAGCTGTCAACTTTTGCATGAGGACACATGAACTGGAAA  650

seq1  TATGATGGGTGACTTAAAGCCTAAGACGGGGACAAAAACACAGACATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGGGTGACTTAAAGCCTAAGACGGGGACAAAAACACAGACATGAA  700

seq1  CCAAGCACTCAGCAGATTCCAGATCATGGGACTTCCAATGAGAGAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCACTCAGCAGATTCCAGATCATGGGACTTCCAATGAGAGAATGAA  750

seq1  AGTTCACTTCTTGCTTCCGAGTAACCGCTTCACTCTTATGTTTTGAGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACTTCTTGCTTCCGAGTAACCGCTTCACTCTTATGTTTTGAGCTT  800

seq1  GGAATGTGGGTCAGGGTAGTAGTAGACAGACCCTAGACACTGGGCCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTGGGTCAGGGTAGTAGTAGACAGACCCTAGACACTGGGCCACAT  850

seq1  GAGCACAGACTTTTTAGATGAGATTTTCAAGTTTTTACCTAAGTGATAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAGACTTTTTAGATGAGATTTTCAAGTTTTTACCTAAGTGATAGG  900

seq1  TTTCCCTGAATCAGGTGGTAGTGATACCTCGATTGTTTGAGCCAAACTTT  950
      ||||||||||||| |||||||||||||||||||||||||||||||   ||
seq2  TTTCCCTGAATCA-GTGGTAGTGATACCTCGATTGTTTGAGCCAA--CTT  947

seq1  GTCTGTGGTAGTTCAGAAGGGCCATCTATTAAAGGTCCTGGCCTCACTAT  1000
      ||||||||||||||||||||  ||||||||||||   |||||||||||||
seq2  GTCTGTGGTAGTTCAGAAGG--CATCTATTAAAG--TCTGGCCTCACTAT  993

seq1  AAACATAAGCTGTGTATATATACATATGTGAGCATGTTTACACTTCTATT  1050
      |||||| ||||||||||||||||||||||||||||||||||||||||| |
seq2  AAACAT-AGCTGTGTATATATACATATGTGAGCATGTTTACACTTCTA-T  1041

seq1  TGTATGTAAACATCTTGTAATTAAGTTTATATATAAAAATCTTATAGACC  1100
      ||||||| |||||||||||    ||||||| |||  |||||| | |   |
seq2  TGTATGT-AACATCTTGTA---TAGTTTAT-TAT-TAAATCTAAGA---C  1082

seq1  TATATTTTGCACGTTGATAAGTATATTCATAGACACATTTTTATGTAATC  1150
      ||||||||||||| |||| |||| | ||||||||      |||||| |||
seq2  TATATTTTGCACG-TGAT-AGTA-AATCATAGAC----CGTTATGT-ATC  1124

seq1  ATAAAATTTGG  1161
      || | ||||||
seq2  AT-AGATTTGG  1134

seq1: chr17_43731557_43732652
seq2: B6Ng01-106D14.g_68_1156 (reverse)

seq1  TTTTTCTCTACTCAGAGCATTCTCTTTTGTGATTAAATCCAGTCACTCAG  50
      |||||||||||| |||||| || | ||||||| |||||||||||||||||
seq2  TTTTTCTCTACT-AGAGCAATC-CCTTTGTGA-TAAATCCAGTCACTCAG  47

seq1  CAGCTTGAACACTTCCCTAGACCTTTAAGGGAAAGACAGGGATCTGGTAA  100
      ||   ||||||  |||||||| ||||||||||||||||||||||||||||
seq2  CAAGCTGAACA--TCCCTAGAACTTTAAGGGAAAGACAGGGATCTGGTAA  95

seq1  TAAACTATTGAAAGCACTGCACTTACTGGACTCCGCTAGACTGAAAGTCT  150
      |||||   |||| ||||||||||||||||||||| |||||||||||||||
seq2  TAAACATATGAAGGCACTGCACTTACTGGACTCCCCTAGACTGAAAGTCT  145

seq1  GTTCATTG-TTTTTCCCAACAGAGCGTCTTCGTGCGTTTGTACT-ACCCA  198
      | |||||| ||||||||||||||||||| ||||||| ||||||| |||||
seq2  G-TCATTGTTTTTTCCCAACAGAGCGTC-TCGTGCG-TTGTACTAACCCA  192

seq1  GCTCAAGATCAA-GGTCGCCTCGACACTGTTTGGATCCCAAACAAAGAAT  247
      |||| ||||||| ||||||||||||||||||| |||||||||||||||||
seq2  GCTC-AGATCAAGGGTCGCCTCGACACTGTTT-GATCCCAAACAAAGAAT  240

seq1  ATTTTTTGGGTC-TTAGTATATTTCTTGGAACACCCAGTATTGTAGGCAA  296
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  ATTTTTTGGGTCTTTAGTATATTTCTTGGAA-ACCCAGTATTGTAGGCAA  289

seq1  TATTTTACACCTCTTATATGGTAAGATTTCTCTTGGTCCTGGTGTGAAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACACCTCTTATATGGTAAGATTTCTCTTGGTCCTGGTGTGAAGT  339

seq1  TATATGCACATCTATCTATGGTTGCATATGTAGATTTGCATACGTAGATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCACATCTATCTATGGTTGCATATGTAGATTTGCATACGTAGATA  389

seq1  TGTTGGAAACAAGAGTTACAAGTAGTAAGACTGAGGTGGGTTTTCTAAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAAACAAGAGTTACAAGTAGTAAGACTGAGGTGGGTTTTCTAAGA  439

seq1  TGGTAAGGGTGTGATTTCTTTTATTTTCTTATCTTTTTCTTTTTTTTTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGGGTGTGATTTCTTTTATTTTCTTATCTTTTTCTTTTTTTTTTT  489

seq1  AAAGACTGTGTATGGGTGTGTTCTTCTGCACATGAGTGTACATTCATGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGTGTATGGGTGTGTTCTTCTGCACATGAGTGTACATTCATGTG  539

seq1  GAGTCCAGAAGACAACCTGAGGTGTGATTTCTCAGAAACATAGTCAACCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAGAAGACAACCTGAGGTGTGATTTCTCAGAAACATAGTCAACCT  589

seq1  ACCCTCCTATGAGGCAGGGTCTGTCAGTAGCCTGGGGCTCATCAGCTAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCTATGAGGCAGGGTCTGTCAGTAGCCTGGGGCTCATCAGCTAGG  639

seq1  CTAGGCTAACTTATCAGCAAGCCCCAGGGAGCCTCCTGGCTCAGACTCCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTAACTTATCAGCAAGCCCCAGGGAGCCTCCTGGCTCAGACTCCC  689

seq1  CAGGACTGGGCTCACAGGTGTGTGCCTGGTGTTTTTATACCACCACATGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTGGGCTCACAGGTGTGTGCCTGGTGTTTTTATACCACCACATGC  739

seq1  AAGGCAAACGCTTTCCAAGTTGAGTGATCTCCCTAACCAGAAAGACGGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAACGCTTTCCAAGTTGAGTGATCTCCCTAACCAGAAAGACGGGA  789

seq1  TTTCTTAAGGAATTAGGCAACACTGAGGGAAGCAAAGGTCCTTTATCATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAGGAATTAGGCAACACTGAGGGAAGCAAAGGTCCTTTATCATT  839

seq1  ATACACTCAGAGTTTAATGGGATGGGATGGGATGGGGATGTCAGGCTTGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTCAGAGTTTAATGGGATGGGATGGGATGGGGATGTCAGGCTTGC  889

seq1  CTTAACATCTTATACCTGACCCTTGGTTCTCTGTTCCGGCCACAAAATGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACATCTTATACCTGACCCTTGGTTCTCTGTTCCGGCCACAAAATGT  939

seq1  AGAAGCCACTAAATGCCCCCCTCCATCCAAAAGGAAGTGCCCTCCTCCTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCACTAAATGCCCCCCTCCATCCAAAAGGAAGTGCCCTCCTCCTG  989

seq1  CACTCCCTCTTCCTCTCTAGGACCCAGAAGGCTCTCCAACTCCTCACCCA  1046
      ||||||||||||||||||||||||||||||||||||||||||        
seq2  CACTCCCTCTTCCTCTCTAGGACCCAGAAGGCTCTCCAACTCNNNNNNNN  1039

seq1  GGGATTGGCTTCTTTCCATCTTTATTATTCGGTTAATTAGGGGAGAATTC  1096
                ||||||||||||||||||||||||||||||||||||||||
seq2  NNNNNNNNNNTCTTTCCATCTTTATTATTCGGTTAATTAGGGGAGAATTC  1089