BAC Information

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BAC

Clone NameB6Ng01-106E19
Chromosome17 (Build37)7 (Build37)
Map Location 29,512,011 - 29,512,46295,393,935 - 95,395,071
singlet/doubletsingletsinglet
Overlap geneFgd2
Upstream geneFkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1
Downstream genePim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3, Btbd9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106E19.bB6Ng01-106E19.g
ACCDH914078DH914079
length8181,108
definitionDH914078|Mus musculus domesticus DNA, BAC clone: B6Ng01-106E19, 5' end.DH914079|Mus musculus domesticus DNA, BAC clone: B6Ng01-106E19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,512,011 - 29,512,462)(95,393,935 - 95,395,071)
sequence
gaattctttccagcttctgtatgttataaacaagggtgctatgaacatag
tggagcatgtatccgtattacatgttggaccatcttctgggtatatgccc
aggagtagtacagctgggtcctcaggtccaattttctgagaaaccaccag
actgatttccagagtgttgtaccagctttcaatcccaccaacagtggaag
agtgttcctatttccccacatccttgccagcatcttctgtcacctgagtt
ttttaacttagccattttgaatggtgtgagatagaaactcagagttgttt
tgatttgcatttccctgatgactaaggatgttgaacatttctttaaatgc
ttcttaaccattcaagtttccacagttgataattctatgtttagctctgc
tccccccttttttgtttttgttttttgtttgtttgttttgttttgttttt
cgacacagggtttctctgtatagccctggctgtcctggaactcactttgt
agaccaggctggcctcgtactcagaaattcgcctacctctgcctcccgag
tgctgggattaaaggcatgtaccaccatgtccggctccccatttttaata
gggctatttgattatctggagtttaacttcttgagttctttgtatatatt
ggatattacccctctattggatgtcaaagaatacacatagagcaaaccat
agctctagccatatatgtagctgaggatagtcttgttgggcatcaaggag
aggaaaggcccttgctcctgtgaaggaacagtgccccggtgtaggaaaaa
gccaggatggggatgcag
gaattcccaaagcacttcacaatgttcaaaaaaatgttcacaaaacaaat
cttagagcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcaaaacaaag
tttagagaaagtcccaaaatatagagttgtaaggttaatggtttaagttt
gagaagacagaaaaattattcatggaatctgattttggccattgactcat
tgccaggctgactgtgaaggtgctcagcaggccactgtcactaggatgtc
aagggcagatgagaaagtgatgggatatactgagtagaaaaagatgcaaa
gaatttgtccctaggttaaaaaagggaggtgggaatgtaatgtgtaataa
taaagtataaatctaagaagcaagaagaatggatatcataatccaacaaa
aattataaaggtttttaaatttatcatttatttgtattttatatgtagaa
gtgtttttgcctgtaatcgcctgtgtgtctgcagaggcctggatcccccg
gagctggagttccagatggtagtgctgggaatcaaactggggtcctctac
cagagcattatcttaactgctgagccatctctacagcctcttgtgagagt
tcttagtcctgccagataatgatgactatagccaatgatgatgattaaag
acaaaggatgctaagtaacactttctattaaaattagctattttcatttc
acaaaactggttcagaaagatggcatacattgcccaaaccaaatcatagc
agacaccatgcttctaatctaaatcctttaatttcaaactctgtgttcat
aacaataattcccctacatccgagggaagcaaattatctcaggctctacc
taaatcctaacacacaatcaagatgatcgacacaactactccaagaaatg
agtgtataaagacagatattttgggacagcagctgtgactgcctttgatg
actagatttgtgttggatatagtttgatgaggatggtctcctagccacat
gtaaaatacagctgtgctcaatcctcgtgaatcatctcgtattccttgat
tgctcactcccatccaatactcaagtacccagtcatggttcttcctctgt
tcaatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_29512011_29512462
seq2: B6Ng01-106E19.b_447_857 (reverse)

seq1  CTGCATCCCCATCCTGGCCGGCTCTCTGGCCTGGG---TGTGTCCACCAT  47
      ||||||||||||||||||    ||     || |||   ||| |||  || 
seq2  CTGCATCCCCATCCTGGCTTTTTCCTACACCGGGGCACTGT-TCCTTCAC  49

seq1  CCCTGCA-----CTTCCCAC-CTGTGATGCAGTGTGAAGCT-TCCT--GC  88
          |||     ||| || | |  ||||||      |  || ||||  ||
seq2  AGGAGCAAGGGCCTTTCCTCTCCTTGATGCCCAACAAGACTATCCTCAGC  99

seq1  TTCAGGGATGGGGAGGTGGGTCTGGGGAAGGGAACTGGCCTGCTGGAGCC  138
      | ||   ||||          ||     || |   |||  ||||  |   
seq2  TACATATATGG----------CT-----AGAGCTATGGTTTGCTCTATGT  134

seq1  TCCTTCAGTGACCTGCCCATTCACCTGCCCAGAGCTGAGAGGTTCTCTAT  188
         |||  |||| |  ||| |                |||||     |||
seq2  GTATTCTTTGACAT--CCAAT----------------AGAGGGGTAATAT  166

seq1  CC---CTGGATGAGCATCTCTTGTGCATGTGTGTGCTCTCTTGTGCATGC  235
      ||    |  |  |  | |||  |   | ||   |   |||  |   ||  
seq2  CCAATATATACAAAGAACTCAAG---AAGT---TAAACTCCAG---ATAA  207

seq1  TCTCAAACACCAAATGCTTAAAAA--AACAACTGGGCGTGGTGGCGCACA  283
      ||  | |  || |    |||||||     | | || | ||||||  ||  
seq2  TCAAATAGCCCTA----TTAAAAATGGGGAGCCGGACATGGTGGTACATG  253

seq1  CCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCG  333
      |||||||||||||||||||||||||||||| ||||| |||||||||| ||
seq2  CCTTTAATCCCAGCACTCGGGAGGCAGAGGTAGGCGAATTTCTGAGTACG  303

seq1  AGGCCAGCCTGGTCTACAGAGTGAGTTCCAAGACAGCCAGGGCTACACAG  383
      |||||||||||||||||| ||||||||||| |||||||||||||| ||||
seq2  AGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAG  353

seq1  AGAAACCCTGTCTCAAAAAACAAA--CAAACAAACAAACAAAAAACCAAC  431
      ||||||||||| || |||||||||   ||||||||||||||||       
seq2  AGAAACCCTGTGTCGAAAAACAAAACAAAACAAACAAACAAAA-------  396

seq1  AACAACAACAACAACAAAAAA  452
            ||||| |||||||||
seq2  ------AACAAAAACAAAAAA  411

seq1: chr7_95393935_95395071
seq2: B6Ng01-106E19.g_68_1175

seq1  GAATTCCCAAAGCACTTCACAATGTTCAAAAAAATGTTCACAAAACAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAAGCACTTCACAATGTTCAAAAAAATGTTCACAAAACAAAT  50

seq1  CTTAGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCAAAACAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCAAAACAAAG  100

seq1  TTTAGAGAAAGTCCCAAAATATAGAGTTGTAAGGTTAATGGTTTAAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGAAAGTCCCAAAATATAGAGTTGTAAGGTTAATGGTTTAAGTTT  150

seq1  GAGAAGACAGAAAAATTATTCATGGAATCTGATTTTGGCCATTGACTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGACAGAAAAATTATTCATGGAATCTGATTTTGGCCATTGACTCAT  200

seq1  TGCCAGGCTGACTGTGAAGGTGCTCAGCAGGCCACTGTCACTAGGATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCTGACTGTGAAGGTGCTCAGCAGGCCACTGTCACTAGGATGTC  250

seq1  AAGGGCAGATGAGAAAGTGATGGGATATACTGAGTAGAAAAAGATGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAGATGAGAAAGTGATGGGATATACTGAGTAGAAAAAGATGCAAA  300

seq1  GAATTTGTCCCTAGGTTAAAAAAGGGAGGTGGGAATGTAATGTGTAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTCCCTAGGTTAAAAAAGGGAGGTGGGAATGTAATGTGTAATAA  350

seq1  TAAAGTATAAATCTAAGAAGCAAGAAGAATGGATATCATAATCCAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATAAATCTAAGAAGCAAGAAGAATGGATATCATAATCCAACAAA  400

seq1  AATTATAAAGGTTTTTAAATTTATCATTTATTTGTATTTTATATGTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAAAGGTTTTTAAATTTATCATTTATTTGTATTTTATATGTAGAA  450

seq1  GTGTTTTTGCCTGTAATCGCCTGTGTGTCTGCAGAGGCCTGGATCCCCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTGCCTGTAATCGCCTGTGTGTCTGCAGAGGCCTGGATCCCCCG  500

seq1  GAGCTGGAGTTCCAGATGGTAGTGCTGGGAATCAAACTGGGGTCCTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGAGTTCCAGATGGTAGTGCTGGGAATCAAACTGGGGTCCTCTAC  550

seq1  CAGAGCATTATCTTAACTGCTGAGCCATCTCTACAGCCTCTTGTGAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCATTATCTTAACTGCTGAGCCATCTCTACAGCCTCTTGTGAGAGT  600

seq1  TCTTAGTCCTGCCAGATAATGATGACTATAGCCAATGATGATGATTAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTCCTGCCAGATAATGATGACTATAGCCAATGATGATGATTAAAG  650

seq1  ACAAAGGATGCTAAGTAACACTTTCTATTAAAATTAGCTATTTTCATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGATGCTAAGTAACACTTTCTATTAAAATTAGCTATTTTCATTTC  700

seq1  ACAAAACTGGTTCAGAAAGATGGCATACATTGCCCAAACCAAATCATAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTGGTTCAGAAAGATGGCATACATTGCCCAAACCAAATCATAGC  750

seq1  AGACACCATGCTTCTAATCTAAATCCTTTAATTTCAAACTCTGTGTTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCATGCTTCTAATCTAAATCCTTTAATTTCAAACTCTGTGTTCAT  800

seq1  AACAATAATTCCCCTACATCCGA-GGAAGCAAATTATCTCAGGCTCTACC  849
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACAATAATTCCCCTACATCCGAGGGAAGCAAATTATCTCAGGCTCTACC  850

seq1  TAAATCCTAACACACAATCAAGATGATCGACACAACTACTCCAAGAAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCTAACACACAATCAAGATGATCGACACAACTACTCCAAGAAATG  900

seq1  AGTGTATAAAGACAGATATTATGGGACAGCAGCTGTGAACTGCCTTTGAT  949
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  AGTGTATAAAGACAGATATTTTGGGACAGCAGCTGTG-ACTGCCTTTGAT  949

seq1  GACCTAGATTTGTGTTTGGAATATAAGTTTTGATTGAGGAATGGTCTCCT  999
      || |||||||||||||  | |||||   ||||| ||||| ||||||||| 
seq2  GA-CTAGATTTGTGTT--GGATATA--GTTTGA-TGAGG-ATGGTCTCC-  991

seq1  TAGCACACAATGTTAAAAATACAGCTGTGCTCAAATCCTTCGTGAAATCC  1049
      |||| ||| ||||  ||||||||||||||||| ||||| |||||||   |
seq2  TAGC-CAC-ATGT--AAAATACAGCTGTGCTC-AATCC-TCGTGAA--TC  1033

seq1  ATCTCGTCATCTCTTTGATTTTGCTCACTCACATCACATTACTTCAAAGT  1099
      ||||||| || || ||||  |||||||||| |||| || ||||   ||||
seq2  ATCTCGT-AT-TCCTTGA--TTGCTCACTCCCATC-CAATACT--CAAGT  1076

seq1  ACCCAGTCCATTGTTTCCTTTCCTCTGTTATCAATCAA  1137
      ||||||| ||| |||    |||||||||  ||||||||
seq2  ACCCAGT-CATGGTT---CTTCCTCTGT--TCAATCAA  1108