BAC Information

Click to search

BAC

Clone NameB6Ng01-106F14
Chromosome17 (Build37)
Map Location 83,581,783 - 83,704,032
singlet/doubletdoublet
Overlap geneAW548124, EG545226
Upstream geneLOC625467, LOC668836, EG433141, EG625514, LOC100043711, LOC100043900
Downstream geneEml4, Cox7a2l, Kcng3, Mta3, Haao, Zfp36l2, Thada
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106F14.bB6Ng01-106F14.g
ACCDH914116DH914117
length1,112855
definitionDH914116|Mus musculus domesticus DNA, BAC clone: B6Ng01-106F14, 5' end.DH914117|Mus musculus domesticus DNA, BAC clone: B6Ng01-106F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,581,783 - 83,582,894)(83,703,173 - 83,704,032)
sequence
gaattccaggatccagagttcacgattgatcgggatctccatgaacttgt
tgaaagggggaccgtccgtggacttttggaagaggggcagagagaacagc
caggctaatatagatcagctcctggccaaggctctcttgccccttttctt
ttctttttttttttaagatttatttattgattatatgtaagtacactgta
gctgtcttcagacactccagaaaagggagtcagatctcgttactctcgtt
acagatggttgtgagccaccatgtggttgctgggatttgaactcagaacc
ttcagaagagcagtcgggtgctcttacccactgagccatctcacgaaccc
tcttgccccttttctaaagacccaacagcccctcttccctacggctctct
gtgtccccagatttattttgctttctttcgctaaatcaaactttatcaga
cagttttactgtcagccgttaaaccaaaatgtgtttgtgcaacagtaaac
accttgttacttcagggaaggattacataaacaacgttggatgaggcaga
catgctgtactgggagggaggctgctgcccacgtgggtgtggaggaagac
acttggtggggggcactccagggccaggaggcaaggggatggggctcact
ctggcctgggttttctgctgtaaaatgggaaggtgggtagacagtccaaa
ttgaacaatgaggtcttctaaagatcacagtcagggtaagggccctgtcg
tagccctgagggagaatcggttgggacaatacaatagtccagagagcaga
ctttccaggaggtggtgcctccgacaccagctcattttgacttctcacac
ccacatccagaaacttaagacccgcataccacaggctctgttctcatcaa
tcatttctttacttcctacgctacatctaccgctaccactttcttgtatt
tagcatttgcttctctggcaggtacttccggctttattgtcattacccta
atttccagttttaaggtcagtacttttattattccatgttatagttgggg
aaacaagatctagaagtagttatgcctctggttacacagcccctctgagc
cagactgctgcc
gaattcactcctgacttgtgcaatgcaggaaagacccatgtaagcccttc
agttccactcggcactaatagtgtcattgactcatgcctcatactcatgg
ctatgggagggtctaagtggccattgaaggttctgaatcttggctgtctg
gatgtggcattctcagaaacgcagtgtcttcagggagacattgtggaaag
gggactgtacagtgctgtcatgtagcttgcagccagtctccagcatgatc
ctgaggccagcagggagggagggaatgcaatttgggaagatctcttcatg
gcctagtcactgtctcctagggtggggttggaagctggcttctgggtgaa
cacacccagctccttgtctacagagacattctcgacagctgttgtctgtg
tttggctttcagcttggctcccttaacctggattgcagaagtcatttaga
gaggataactgagacactggtgttttggtcttatcttgcttggattccct
ccctacagccctgcagctgcacatgtatcttaggttcggagagtaggtct
ttggtttgccccagggtttggaggacctctttacaagttcatgatataag
ggataggaggaattggtgcatatctatacctatatatttgtggggttttg
tttttgatgggctttaatagaaatgaagaataggaaaaccttacatcatt
tggatcattccaggtttataagaacacagtgggtgatgttttaggaacta
tcttcccatagaccttgggttttttgttttgtttgtttggttttttttta
gggtcacaagcccagctactcttaaactccctatatttcttgcttttgcc
ttcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_83581783_83582894
seq2: B6Ng01-106F14.b_45_1156

seq1  GAATTCCAGGATCCAGAGTTCACGATTGATCGGGATCTCCATGAACTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATCCAGAGTTCACGATTGATCGGGATCTCCATGAACTTGT  50

seq1  TGAAAGGGGGACCGTCCGTGGACTTTTGGAAGAGGGGCAGAGAGAACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGGGGACCGTCCGTGGACTTTTGGAAGAGGGGCAGAGAGAACAGC  100

seq1  CAGGCTAATATAGATCAGCTCCTGGCCAAGGCTCTCTTGCCCCTTTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAATATAGATCAGCTCCTGGCCAAGGCTCTCTTGCCCCTTTTCTT  150

seq1  TTCTTTTTTTTTTTAAGATTTATTTATTGATTATATGTAAGTACACTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTTTTTTAAGATTTATTTATTGATTATATGTAAGTACACTGTA  200

seq1  GCTGTCTTCAGACACTCCAGAAAAGGGAGTCAGATCTCGTTACTCTCGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTCAGACACTCCAGAAAAGGGAGTCAGATCTCGTTACTCTCGTT  250

seq1  ACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGAACC  300

seq1  TTCAGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACGAACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACGAACCC  350

seq1  TCTTGCCCCTTTTCTAAAGACCCAACAGCCCCTCTTCCCTACGGCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCCCTTTTCTAAAGACCCAACAGCCCCTCTTCCCTACGGCTCTCT  400

seq1  GTGTCCCCAGATTTATTTTGCTTTCTTTCGCTAAATCAAACTTTATCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCCAGATTTATTTTGCTTTCTTTCGCTAAATCAAACTTTATCAGA  450

seq1  CAGTTTTACTGTCAGCCGTTAAACCAAAATGTGTTTGTGCAACAGTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTACTGTCAGCCGTTAAACCAAAATGTGTTTGTGCAACAGTAAAC  500

seq1  ACCTTGTTACTTCAGGGAAGGATTACATAAACAACGTTGGATGAGGCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTTACTTCAGGGAAGGATTACATAAACAACGTTGGATGAGGCAGA  550

seq1  CATGCTGTACTGGGAGGGAGGCTGCTGCCCACGTGGGTGTGGAGGAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGTACTGGGAGGGAGGCTGCTGCCCACGTGGGTGTGGAGGAAGAC  600

seq1  ACTTGGTGGGGGGCACTCCAGGGCCAGGAGGCAAGGGGATGGGGCTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTGGGGGGCACTCCAGGGCCAGGAGGCAAGGGGATGGGGCTCACT  650

seq1  CTGGCCTGGGTTTTCTGCTGTAAAATGGGAAGGTGGGTAGACAGTCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTGGGTTTTCTGCTGTAAAATGGGAAGGTGGGTAGACAGTCCAAA  700

seq1  TTGAACAATGAGGTCTTCTAAAGATCACAGTCAGGGTAAGGGCCCTGTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAATGAGGTCTTCTAAAGATCACAGTCAGGGTAAGGGCCCTGTCG  750

seq1  TAGCCCTGAGGGAGAATCGGTTGGGACAATACAATAGTCCAGAGAGCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGAGGGAGAATCGGTTGGGACAATACAATAGTCCAGAGAGCAGA  800

seq1  CTTTCCAGGAGGTGGTGCCTCCGACACCAGCTCATTTTGAC-TCTCACAC  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTTCCAGGAGGTGGTGCCTCCGACACCAGCTCATTTTGACTTCTCACAC  850

seq1  CCACATCCAGAAACTTAAGACCCGCATACCACAGGCTCTGTTCTCATCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCCAGAAACTTAAGACCCGCATACCACAGGCTCTGTTCTCATCAA  900

seq1  TCATTTCCTTAC-TCCTACGCTACATCTACCGCTACCAC-TTCTTGTATT  947
      ||||||| |||| |||||||||||||||||||||||||| ||||||||||
seq2  TCATTTCTTTACTTCCTACGCTACATCTACCGCTACCACTTTCTTGTATT  950

seq1  AAGCATTTGC-TCTCTGGCAGGTAC-TCCGGCTTTATTGTCATTAACCCT  995
       ||||||||| |||||||||||||| |||||||||||||||||| |||||
seq2  TAGCATTTGCTTCTCTGGCAGGTACTTCCGGCTTTATTGTCATT-ACCCT  999

seq1  CATATCCAGTTTAAAGGTCAGTTACTTTTATTATTCCATGTTATAGTTGG  1045
       || |||||||| |||||||| ||||||||||||||||||||||||||||
seq2  AATTTCCAGTTTTAAGGTCAG-TACTTTTATTATTCCATGTTATAGTTGG  1048

seq1  GGAAACCAAGATTCAGAGAAGTAG-TATGCCTCTGGTCACACAGCCACTC  1094
      ||||| ||||||    |||||||| |||||||||||| |||||||| |||
seq2  GGAAA-CAAGAT--CTAGAAGTAGTTATGCCTCTGGTTACACAGCCCCTC  1095

seq1  TGAGCCAGAACTGCTGCC  1112
      |||||||| |||||||||
seq2  TGAGCCAG-ACTGCTGCC  1112

seq1: chr17_83703173_83704032
seq2: B6Ng01-106F14.g_70_924 (reverse)

seq1  TAGAAGGCAGAAGCAAG-AATATAGGGAGTTTGAGGCTAGCCTGGGCTAT  49
      | ||||||| ||||||| |||||||||||||| ||  ||| ||||||| |
seq2  TTGAAGGCAAAAGCAAGAAATATAGGGAGTTTAAGAGTAG-CTGGGCT-T  48

seq1  GTGACCCTTAAAAAAAAAACACAAAACAAAACAAAACAAAAAAACCCAAG  99
      ||||||||    ||||||| || |||| ||||||||| ||||||||||||
seq2  GTGACCCT----AAAAAAAAACCAAAC-AAACAAAAC-AAAAAACCCAAG  92

seq1  GTCTATGGGAAGATAGTTCCTAAAACATCACCCACTGTGTTCTTAT-AAC  148
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTCTATGGGAAGATAGTTCCTAAAACATCACCCACTGTGTTCTTATAAAC  142

seq1  CTGGAATGATCCAAATGATGTAAGGTTTTCCTATTCTTCA-TTCTATTAA  197
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTGGAATGATCCAAATGATGTAAGGTTTTCCTATTCTTCATTTCTATTAA  192

seq1  AGCCCATCAAAAACAAAACCCCACAAATATATAGGTATAGATATGCACCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATCAAAAACAAAACCCCACAAATATATAGGTATAGATATGCACCA  242

seq1  ATTCCTCCTATCCCTTATATCATGAACTTGTAAAGAGGTCCTCCAAACCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCCTATCCCTTATATCATGAACTTGTAAAGAGGTCCTCCAAACCC  292

seq1  TGGGGCAAACCAAAGACCTACTCTCCGAACCTAAGATACATGTGCAGCTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAAACCAAAGACCTACTCTCCGAACCTAAGATACATGTGCAGCTG  342

seq1  CAGGGCTGTAGGGAGGGAATCCAAGCAAGATAAGACCAAAACACCAGTGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGTAGGGAGGGAATCCAAGCAAGATAAGACCAAAACACCAGTGT  392

seq1  CTCAGTTATCCTCTCTAAATGACTTCTGCAATCCAGGTTAAGGGAGCCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTATCCTCTCTAAATGACTTCTGCAATCCAGGTTAAGGGAGCCAA  442

seq1  GCTGAAAGCCAAACACAGACAACAGCTGTCGAGAATGTCTCTGTAGACAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAGCCAAACACAGACAACAGCTGTCGAGAATGTCTCTGTAGACAA  492

seq1  GGAGCTGGGTGTGTTCACCCAGAAGCCAGCTTCCAACCCCACCCTAGGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGGTGTGTTCACCCAGAAGCCAGCTTCCAACCCCACCCTAGGAG  542

seq1  ACAGTGACTAGGCCATGAAGAGATCTTCCCAAATTGCATTCCCTCCCTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACTAGGCCATGAAGAGATCTTCCCAAATTGCATTCCCTCCCTCC  592

seq1  CTGCTGGCCTCAGGATCATGCTGGAGACTGGCTGCAAGCTACATGACAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCCTCAGGATCATGCTGGAGACTGGCTGCAAGCTACATGACAGC  642

seq1  ACTGTACAGTCCCCTTTCCACAATGTCTCCCTGAAGACACTGCGTTTCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACAGTCCCCTTTCCACAATGTCTCCCTGAAGACACTGCGTTTCTG  692

seq1  AGAATGCCACATCCAGACAGCCAAGATTCAGAACCTTCAATGGCCACTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCCACATCCAGACAGCCAAGATTCAGAACCTTCAATGGCCACTTA  742

seq1  GACCCTCCCATAGCCATGAGTATGAGGCATGAGTCAATGACACTATTAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCCCATAGCCATGAGTATGAGGCATGAGTCAATGACACTATTAGT  792

seq1  GCCGAGTGGAACTGAAGGGCTTACATGGGTCTTTCCTGCATTGCACAAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAGTGGAACTGAAGGGCTTACATGGGTCTTTCCTGCATTGCACAAGT  842

seq1  CAGGAGTGAATTC  860
      |||||||||||||
seq2  CAGGAGTGAATTC  855