BAC Information

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BAC

Clone NameB6Ng01-107G19
Chromosome17 (Build37)
Map Location 43,061,029 - 43,208,373
singlet/doubletdoublet
Overlap geneTnfrsf21
Upstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap
Downstream geneLOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107G19.bB6Ng01-107G19.g
ACCDH914897DH914898
length1,1721,112
definitionDH914897|Mus musculus domesticus DNA, BAC clone: B6Ng01-107G19, 5' end.DH914898|Mus musculus domesticus DNA, BAC clone: B6Ng01-107G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,207,174 - 43,208,373)(43,061,029 - 43,062,168)
sequence
gaattcaaggccatcttcttaccctaccaaagggaaaggggttgtacata
aaaagaacagaaaataaatattgcactcactaagcccagctgcgttcaca
aagagttaaaagtcaaagtagggaaaaggagaaaaaagtaagttaaaaag
aaaacctagaaattcagctagccagcttcacttctcttgagagccaggag
ctgggagaaaccactatcttcacacacacctttgttttcttgcaaaggag
aacattccagccagcactcgctcaggcaggaaggagtaaatatttacagt
tagctggattttctagttcttgggcactgaacccaggcaactctctgcct
tgacagaccatccacttccagaggcctggaaacctggtaggcctccccat
ccaaaactatgtgaccccagccttcaggatttaaaaggtccattatgtgt
gtgtgagttggagttggttaggaataagccagggagtcattacatccaaa
agagaaataaacataaatgaattgctttctggtggctatgccacatccat
ccccgaagcaaccaaccacaggcatcatgttcagttgcgaggaaactgag
gcagagaagcacggtcgtttacccagggtcctcaagctgagtataccctg
aggagtctggcagcttgtcaatctccactctccttttcctactggagtct
taatggctgctttcaagaacagccagtacgttagtcctccaacctcctgg
actcagttgcttggatcacacaggtctgtgtggggttgctttcataactc
aactgcaagctccccttgacgtcgttcactgtgccttacacatctgcagg
acccagagtgcttggtatcatactgtgctcataaatgcttacaaaatgga
gatttcaagataaaaatccactccatcgacttgctgttccaggaggagga
acagaaacccgagcattgaagaaagataccaaaagaaagtactgggaagc
caaccttctagtcctagctatccctcaaactagagtaaataatatttgtg
gttatagttattatgcttattattcggtactgtgtgaccccacctgaaca
ggtgggttaacaagagaatgctcaggtgttacgacatccagcttgtccaa
ctctcctaactgaggaggatcg
gaattcagaacgcaagactgttagctttaagaagggtctgggctggagag
atggttcaatggttatgagcactgactgttcttccaaaagttctgagttc
aattcccagcaaccacatggtggctcacaaccatctgtaatgggtctgat
gccctatctggtatgtctgaagacagctacattgtaattcatatacataa
aataaataatttaaaaaaaaaagaagggtcctcttttatttctttgagaa
cagaagagagagagacagggtgatactctgaggtcaagaattaactagtc
tttaggataggcattttgtactacaacctgtctcaaaaggaatggtccca
agaattctgcctcaagaaaaccatgttaaacaactgagttcccttgggat
ggggatgtagctccactggtggagaaatgccttcttcaaatgcatgaaga
tgtgggtttaaccctccacagctcctgcgctgggcgtgctgatacatacc
caccatttcagcactttagatttcagaacagcgtgctcaggcattcgaag
tcattcttggccacatagggagttcatggccagcctggactacacgagcc
tctgcctcaaaaataaaatgataaaataaagaaaactaaataagataaaa
taaaaaaataagttcctgagcacgcgtgtgaacatttaggggagctacag
cgttaccctgtcatgcacgtcctatgggggaaaccagaagtggttccctc
agaaaacagaaatgagagctgagccagggcagaccggttactggagaagg
ctgtgctctttagtggcctgggttaaaggagtaccttccaaatggcctga
cagaggaaggtgacagaggtcatcaaaattaaagatggcaggaggaagag
tgaaactgtgagctagggcagatttgcagcatcttcatgggagtcatgtg
tagaagagaggcatgtctttctgtcttctttctttttttttttttgagac
cacagttggtctggctgtctgacttcactatacagacagtgcggtctcac
tctaaatgctttcaaccattatacaaattcctcaggtggtgaccccccca
ccattaattatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_43207174_43208373
seq2: B6Ng01-107G19.b_42_1213 (reverse)

seq1  CGATCATCCTCAGTTATAGGAAGAGTTTTTGAGACCAGCCTGGGATAGTC  50
      ||||| ||||||||||   | ||||||     ||| |||   |||| |||
seq2  CGATCCTCCTCAGTTA---GGAGAGTT----GGACAAGC--TGGAT-GTC  40

seq1  TGTCTAACTACCTGGGCCATTCTCCTTTGTTTAAACCACACTGTTCAGGT  100
          |||| ||||| | |||||||  ||| |||| |||| ||||||||| 
seq2  ---GTAAC-ACCTGAG-CATTCTC--TTG-TTAACCCAC-CTGTTCAGG-  80

seq1  TGGGGTCACACAGTACCGAATAAATAAGCAATAATAACTAATAAACACAA  150
      ||||||||||||||||||||| ||||||| ||||||||| |||| ||| |
seq2  TGGGGTCACACAGTACCGAAT-AATAAGC-ATAATAACT-ATAACCAC-A  126

seq1  AATATTATTTTACTCTAGTTTTGAGGGATAGCTAGGAACTAGAAGGTTGG  200
      ||||||| |||||||||| ||||||||||||||||| |||||||||||||
seq2  AATATTA-TTTACTCTAG-TTTGAGGGATAGCTAGG-ACTAGAAGGTTGG  173

seq1  CTTCCCAGTTACTTTCTTTTGGTATCTTTCTTCAATGCTCGGGTTTCTGT  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAG-TACTTTCTTTTGGTATCTTTCTTCAATGCTCGGGTTTCTGT  222

seq1  TCCTCCTCCTGGAACAGCAAGTCGATGGAGTGGATTTTTATCTTGAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTGGAACAGCAAGTCGATGGAGTGGATTTTTATCTTGAAATC  272

seq1  TCCATTTTGTAAGCATTTATGAGCACAGTATGATACCAAGCACTCTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTGTAAGCATTTATGAGCACAGTATGATACCAAGCACTCTGGGT  322

seq1  CCTGCAGATGTGTAAGGCACAGTGAACGACGTCAAGGGGAGCTTGCAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGATGTGTAAGGCACAGTGAACGACGTCAAGGGGAGCTTGCAGTT  372

seq1  GAGTTATGAAAGCAACCCCACACAGACCTGTGTGATCCAAGCAACTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATGAAAGCAACCCCACACAGACCTGTGTGATCCAAGCAACTGAGT  422

seq1  CCAGGAGGTTGGAGGACTAACGTACTGGCTGTTCTTGAAAGCAGCCATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGGTTGGAGGACTAACGTACTGGCTGTTCTTGAAAGCAGCCATTA  472

seq1  AGACTCCAGTAGGAAAAGGAGAGTGGAGATTGACAAGCTGCCAGACTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCAGTAGGAAAAGGAGAGTGGAGATTGACAAGCTGCCAGACTCCT  522

seq1  CAGGGTATACTCAGCTTGAGGACCCTGGGTAAACGACCGTGCTTCTCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTATACTCAGCTTGAGGACCCTGGGTAAACGACCGTGCTTCTCTGC  572

seq1  CTCAGTTTCCTCGCAACTGAACATGATGCCTGTGGTTGGTTGCTTCGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTTCCTCGCAACTGAACATGATGCCTGTGGTTGGTTGCTTCGGGG  622

seq1  ATGGATGTGGCATAGCCACCAGAAAGCAATTCATTTATGTTTATTTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGTGGCATAGCCACCAGAAAGCAATTCATTTATGTTTATTTCTCT  672

seq1  TTTGGATGTAATGACTCCCTGGCTTATTCCTAACCAACTCCAACTCACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATGTAATGACTCCCTGGCTTATTCCTAACCAACTCCAACTCACAC  722

seq1  ACACATAATGGACCTTTTAAATCCTGAAGGCTGGGGTCACATAGTTTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAATGGACCTTTTAAATCCTGAAGGCTGGGGTCACATAGTTTTGG  772

seq1  ATGGGGAGGCCTACCAGGTTTCCAGGCCTCTGGAAGTGGATGGTCTGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAGGCCTACCAGGTTTCCAGGCCTCTGGAAGTGGATGGTCTGTCA  822

seq1  AGGCAGAGAGTTGCCTGGGTTCAGTGCCCAAGAACTAGAAAATCCAGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGAGTTGCCTGGGTTCAGTGCCCAAGAACTAGAAAATCCAGCTA  872

seq1  ACTGTAAATATTTACTCCTTCCTGCCTGAGCGAGTGCTGGCTGGAATGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAATATTTACTCCTTCCTGCCTGAGCGAGTGCTGGCTGGAATGTT  922

seq1  CTCCTTTGCAAGAAAACAAAGGTGTGTGTGAAGATAGTGGTTTCTCCCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTGCAAGAAAACAAAGGTGTGTGTGAAGATAGTGGTTTCTCCCAG  972

seq1  CTCCTGGCTCTCAAGAGAAGTGAAGCTGGCTAGCTGAATTTCTAGGTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCTCTCAAGAGAAGTGAAGCTGGCTAGCTGAATTTCTAGGTTTT  1022

seq1  CTTTTTAACTTACTTTTTTCTCCTTTTCCCTACTTTGACTTTTAACTCTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAACTTACTTTTTTCTCCTTTTCCCTACTTTGACTTTTAACTCTT  1072

seq1  TGTGAACGCAGCTGGGCTTAGTGAGTGCAATATTTATTTTCTGTTCTTTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACGCAGCTGGGCTTAGTGAGTGCAATATTTATTTTCTGTTCTTTT  1122

seq1  TATGTACAACCCCTTTCCCTTTGGTAGGGTAAGAAGATGGCCTTGAATTC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACAACCCCTTTCCCTTTGGTAGGGTAAGAAGATGGCCTTGAATTC  1172

seq1: chr17_43061029_43062168
seq2: B6Ng01-107G19.g_67_1178

seq1  GAATTCAGAACGCAAGACTGTTAGCTTTAAGAAGGGTCTGGGCTGGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACGCAAGACTGTTAGCTTTAAGAAGGGTCTGGGCTGGAGAG  50

seq1  ATGGTTCAATGGTTATGAGCACTGACTGTTCTTCCAAAAGTTCTGAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCAATGGTTATGAGCACTGACTGTTCTTCCAAAAGTTCTGAGTTC  100

seq1  AATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGTCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGTCTGAT  150

seq1  GCCCTATCTGGTATGTCTGAAGACAGCTACATTGTAATTCATATACATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATCTGGTATGTCTGAAGACAGCTACATTGTAATTCATATACATAA  200

seq1  AATAAATAATTTAAAAAAAAAAGAAGGGTCCTCTTTTATTTCTTTGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAATTTAAAAAAAAAAGAAGGGTCCTCTTTTATTTCTTTGAGAA  250

seq1  CAGAAGAGAGAGAGACAGGGTGATACTCTGAGGTCAAGAATTAACTAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGAGAGAGACAGGGTGATACTCTGAGGTCAAGAATTAACTAGTC  300

seq1  TTTAGGATAGGCATTTTGTACTACAACCTGTCTCAAAAGGAATGGTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGATAGGCATTTTGTACTACAACCTGTCTCAAAAGGAATGGTCCCA  350

seq1  AGAATTCTGCCTCAAGAAAACCATGTTAAACAACTGAGTTCCCTTGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTGCCTCAAGAAAACCATGTTAAACAACTGAGTTCCCTTGGGAT  400

seq1  GGGGATGTAGCTCCACTGGTGGAGAAATGCCTTCTTCAAATGCATGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGTAGCTCCACTGGTGGAGAAATGCCTTCTTCAAATGCATGAAGA  450

seq1  TGTGGGTTTAACCCTCCACAGCTCCTGCGCTGGGCGTGCTGATACATACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTTAACCCTCCACAGCTCCTGCGCTGGGCGTGCTGATACATACC  500

seq1  CACCATTTCAGCACTTTAGATTTCAGAACAGCGTGCTCAGGCATTCGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTCAGCACTTTAGATTTCAGAACAGCGTGCTCAGGCATTCGAAG  550

seq1  TCATTCTTGGCCACATAGGGAGTTCATGGCCAGCCTGGACTACACGAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTGGCCACATAGGGAGTTCATGGCCAGCCTGGACTACACGAGCC  600

seq1  TCTGCCTCAAAAATAAAATGATAAAATAAAGAAAACTAAATAAGATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCAAAAATAAAATGATAAAATAAAGAAAACTAAATAAGATAAAA  650

seq1  TAAAAAAATAAGTTCCTGAGCACGCGTGTGAACATTTAGGGGAGCTACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATAAGTTCCTGAGCACGCGTGTGAACATTTAGGGGAGCTACAG  700

seq1  CGTTACCCTGTCATGCACGTCCTATGGGGGAAACCAGAAGTGGTTCCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACCCTGTCATGCACGTCCTATGGGGGAAACCAGAAGTGGTTCCCTC  750

seq1  AGAAAACAGAAATGAGAGCTGAGCCAGGGCAGACCGGTTACTGGAGAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAGAAATGAGAGCTGAGCCAGGGCAGACCGGTTACTGGAGAAGG  800

seq1  CTGTGCTCTTTAGTGGCCTGGGTTAAAGGAGTACCTTCCAAATGGCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCTTTAGTGGCCTGGGTTAAAGGAGTACCTTCCAAATGGCCTGA  850

seq1  CAGAGGAAGGTGACAGAGGTCATCAAAATTAAAGATGGCAGGGAGGAAGA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  CAGAGGAAGGTGACAGAGGTCATCAAAATTAAAGATGGCA-GGAGGAAG-  898

seq1  AGTGAAAACTGTGAGCTAGGGCAGAATTTGCAGCAATCTTCATGGGAAGT  950
      |||| ||||||||||||||||||| ||||||||| ||||||||||||   
seq2  AGTG-AAACTGTGAGCTAGGGCAG-ATTTGCAGC-ATCTTCATGGGA--G  943

seq1  TCATGTGTAAGAAAGAGGAAGGGCATTGTCTTTCTGTCTTTCTTTCTTTT  1000
      |||||||||  | ||||| |      |||||||||||| |||||||  ||
seq2  TCATGTGTAGAAGAGAGGCA------TGTCTTTCTGTC-TTCTTTC--TT  984

seq1  TTTTTTTTTTTGAGA-CACAGTTTGGTCTTGGCTGTCCTGGAACTCACTA  1049
      ||||||||||||||| ||||| |||||| ||||||||   ||  ||||||
seq2  TTTTTTTTTTTGAGACCACAG-TTGGTC-TGGCTGTC--TGACTTCACTA  1030

seq1  TACAGACCAGTGCGGTTCTCAACCTTCATAATGC-TTCAACCATTTAATA  1098
      |||||| |||||||| |||||    ||  ||||| ||||||||||  |||
seq2  TACAGA-CAGTGCGG-TCTCA---CTCTAAATGCTTTCAACCATT--ATA  1073

seq1  C-AATTCTTCAGGTGTGGTGACCCCCCCAACCATAAAATTATT  1140
      | ||||| ||||  |||||||||||||| |||||  |||||||
seq2  CAAATTCCTCAG--GTGGTGACCCCCCC-ACCAT-TAATTATT  1112