BAC Information

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BAC

Clone NameB6Ng01-108A03
Chromosome17 (Build37)
Map Location 15,561,551 - 15,726,647
singlet/doubletdoublet
Overlap gene4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017
Upstream geneThbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314
Downstream geneLOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3, LOC100041383, LOC100041394, LOC213781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108A03.bB6Ng01-108A03.g
ACCDH915308DH915309
length926488
definitionDH915308|Mus musculus domesticus DNA, BAC clone: B6Ng01-108A03, 5' end.DH915309|Mus musculus domesticus DNA, BAC clone: B6Ng01-108A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,561,551 - 15,562,475)(15,726,154 - 15,726,647)
sequence
gaattcccacaattcccccagttaaagactatatgggtagtatttgtcta
cttgacaaaagttaaggtttactttttctcataacaaagggacataacaa
agaaaaattcagtatgttctatacatatattgcagaataacagtggaaaa
aaaaaggtcatgaatttgaatgcaagtagggagggggaaatgggaggaac
ttgaaggaagggagaaatgtcacaattaaaatatcttaaaaggaaagcat
ttcaaaagaactgtgaaatgacttacagctctgtgacctaaaatgagacc
tgctgaaagatgttaaatttctgatatgcctttcaaggttctcactcagc
cgtctccccagcacttcccaccatgctgaacagtggacagtcttctttca
ctgttgtccatgacacatgtccatgtctctgagggtcatatcaaacatct
attgtacttgggagttcctgcaaagttccacactgccagtggactctaag
catccaaggcgccctgcagtgagggtgtcagtaacgggcatcccaatagg
ccgattgtcagtagccacagtcaggaggccttgctcagtgagtaaggtct
ggggaggactgggtattgatttgggtgaactacaacagtaggaagagcaa
ggaaggtcaattggagttgggtacagaattcttaatactatattgaaaag
agttgatatctatattcattacaaattggggcgctttttaagttttgaag
tgctcttatcaggatagcgactgctctgacagtggaagaaaatgggatca
ggagatggcccatggattgtcccgggccccaagcaagagtggcccttggg
gaaattgccagcactcttggggactctcaggcatcagtctgttgtgctgt
gatctttcttgggcactgctgaggtg
aaaactgacatcagtgaaggcatttatcctcttctttactctgctcagag
caactgaagcatctctggagcagcgtagcactggggtgtggggagccaga
gagggagagtgggaaggtgaggagaataaaaactgtagtggtgaaattat
agcacctgatgggtctgagaaacacagggattgcccaagtgctcctgggt
gtgtctgttaaggcatgtgggtaggtaacaaaaaaaaaaacagtagcctt
cgcttggttcctccttataatcctctcttatttcctacttggccatgata
tgaagagttctgctcagtcatatctgccacggtagacttctgaagttgtt
aaataagttctccctcctctagcttgtgtccactgggcacttcatcacag
caacacgaaaagcctaggatgagaatatacagaaggctgcagaggctgtg
agagagaggaggtacaggagcttttgagagagtttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_15561551_15562475
seq2: B6Ng01-108A03.b_45_970

seq1  GAATTCCCACAATTCCCCCAGTTAAAGACTATATGGGTAGTATTTGTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACAATTCCCCCAGTTAAAGACTATATGGGTAGTATTTGTCTA  50

seq1  CTTGACAAAAGTTAAGGTTTACTTTTTCTCATAACAAAGGGACATAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACAAAAGTTAAGGTTTACTTTTTCTCATAACAAAGGGACATAACAA  100

seq1  AGAAAAATTCAGTATGTTCTATACATATATTGCAGAATAACAGTGGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATTCAGTATGTTCTATACATATATTGCAGAATAACAGTGGAAAA  150

seq1  AAAAAGGTCATGAATTTGAATGCAAGTAGGGAGGGGGAAATGGGAGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGTCATGAATTTGAATGCAAGTAGGGAGGGGGAAATGGGAGGAAC  200

seq1  TTGAAGGAAGGGAGAAATGTCACAATTAAAATATCTTAAAAGGAAAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGAAGGGAGAAATGTCACAATTAAAATATCTTAAAAGGAAAGCAT  250

seq1  TTCAAAAGAACTGTGAAATGACTTACAGCTCTGTGACCTAAAATGAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGAACTGTGAAATGACTTACAGCTCTGTGACCTAAAATGAGACC  300

seq1  TGCTGAAAGATGTTAAATTTCTGATATGCCTTTCAAGGTTCTCACTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAAGATGTTAAATTTCTGATATGCCTTTCAAGGTTCTCACTCAGC  350

seq1  CGTCTCCCCAGCACTTCCCACCATGCTGAACAGTGGACAGTCTTCTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCCCCAGCACTTCCCACCATGCTGAACAGTGGACAGTCTTCTTTCA  400

seq1  CTGTTGTCCATGACACATGTCCATGTCTCTGAGGGTCATATCAAACATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTCCATGACACATGTCCATGTCTCTGAGGGTCATATCAAACATCT  450

seq1  ATTGTACTTGGGAGTTCCTGCAAAGTTCCACACTGCCAGTGGACTCTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACTTGGGAGTTCCTGCAAAGTTCCACACTGCCAGTGGACTCTAAG  500

seq1  CATCCAAGGCGCCCTGCAGTGAGGGTGTCAGTAACGGGCATCCCAATAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAGGCGCCCTGCAGTGAGGGTGTCAGTAACGGGCATCCCAATAGG  550

seq1  CCGATTGTCAGTAGCCACAGTCAGGAGGCCTTGCTCAGTGAGTAAGGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATTGTCAGTAGCCACAGTCAGGAGGCCTTGCTCAGTGAGTAAGGTCT  600

seq1  GGGGAGGACTGGGTATTGATTTGGGTGAACTACAACAGTAGGAAGAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGACTGGGTATTGATTTGGGTGAACTACAACAGTAGGAAGAGCAA  650

seq1  GGAAGGTCAATTGGAGTTGGGTACAGAATTCTTAATACTATATTGAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTCAATTGGAGTTGGGTACAGAATTCTTAATACTATATTGAAAAG  700

seq1  AGTTGATATCTATATTCATTACAAATTGGGGCGCTTTTAAAGGTTTTGAA  750
      |||||||||||||||||||||||||||||||||||||| || ||||||||
seq2  AGTTGATATCTATATTCATTACAAATTGGGGCGCTTTTTAA-GTTTTGAA  749

seq1  GTGCTCTTATCAGGATAGCGACTGCTCTGACAGTGGAAGAAAATGGGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTATCAGGATAGCGACTGCTCTGACAGTGGAAGAAAATGGGATC  799

seq1  AGGAGATGGCCCATGGATTGTCCCGGGCCCCAGGCAAGAGGTGGCCC-TG  849
      |||||||||||||||||||||||||||||||| |||||| ||||||| ||
seq2  AGGAGATGGCCCATGGATTGTCCCGGGCCCCAAGCAAGA-GTGGCCCTTG  848

seq1  GGGAAAGTGCCAGCATCCTTGGGGCCTCTCAGGCATCAGTCTGTTGTGCT  899
      |||||| ||||||||  ||||||| |||||||||||||||||||||||||
seq2  GGGAAATTGCCAGCACTCTTGGGGACTCTCAGGCATCAGTCTGTTGTGCT  898

seq1  GTGATC-TTCTTGGTCACTGCTG-GGTG  925
      |||||| ||||||| |||||||| ||||
seq2  GTGATCTTTCTTGGGCACTGCTGAGGTG  926

seq1: chr17_15726154_15726647
seq2: B6Ng01-108A03.g_66_559 (reverse)

seq1  GAAAAACTCTCTCATAAGCTCCTGTACCTCCTCTCTCTCACAGCCTCTGC  50
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAAAAACTCTCTCAAAAGCTCCTGTACCTCCTCTCTCTCACAGCCTCTGC  50

seq1  AGCCTTCTGTATATTCTCATCCTAGGCTTTTCGTGTTGCTGTGATGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTGTATATTCTCATCCTAGGCTTTTCGTGTTGCTGTGATGAAGT  100

seq1  GCCCAGTGGACACAAGCTAGAGGAGGGAGAACTTATTTAACAACTTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGGACACAAGCTAGAGGAGGGAGAACTTATTTAACAACTTCAGA  150

seq1  AGTCTACCGTGGCAGATATGACTGAGCAGAACTCTTCATATCATGGCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACCGTGGCAGATATGACTGAGCAGAACTCTTCATATCATGGCCAA  200

seq1  GTAGGAAATAAGAGAGGATTATAAGGAGGAACCAAGCGAAGGCTACTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAATAAGAGAGGATTATAAGGAGGAACCAAGCGAAGGCTACTGTT  250

seq1  TTTTTTTTTGTTACCTACCCACATGCCTTAACAGACACACCCAGGAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGTTACCTACCCACATGCCTTAACAGACACACCCAGGAGCAC  300

seq1  TTGGGCAATCCCTGTGTTTCTCAGACCCATCAGGTGCTATAATTTCACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCAATCCCTGTGTTTCTCAGACCCATCAGGTGCTATAATTTCACCA  350

seq1  CTACAGTTTTTATTCTCCTCACCTTCCCACTCTCCCTCTCTGGCTCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTTTTTATTCTCCTCACCTTCCCACTCTCCCTCTCTGGCTCCCCA  400

seq1  CACCCCAGTGCTACGCTGCTCCAGAGATGCTTCAGTTGCTCTGAGCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGTGCTACGCTGCTCCAGAGATGCTTCAGTTGCTCTGAGCAGAG  450

seq1  TAAAGAAGAGGATAAATGCCTTCACTGATGTCAGTTTTGAATTC  494
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGAGGATAAATGCCTTCACTGATGTCAGTTTTGAATTC  494