BAC Information

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BAC

Clone NameB6Ng01-108G22
Chromosome17 (Build37)
Map Location 51,848,541 - 52,028,484
singlet/doubletdoublet
Overlap geneSatb1, EG628919
Upstream geneTbc1d5, LOC100043451, LOC100043452
Downstream geneLOC672987, EG328839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108G22.bB6Ng01-108G22.g
ACCDH915620DH915621
length7971,012
definitionDH915620|Mus musculus domesticus DNA, BAC clone: B6Ng01-108G22, 5' end.DH915621|Mus musculus domesticus DNA, BAC clone: B6Ng01-108G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,027,690 - 52,028,484)(51,848,541 - 51,849,551)
sequence
gaattccaacaccttctacatatctctcttttcaggctctccttcatgca
cgggcatgcagaagcttaggagtagaatgatggtatttgttattctgtta
gcacagttttattaactttcccagtgctggtctttgtattcagagaactg
caacctagtctatacattctactgtgatcatatggtacctacactttctg
agagcaccgtcttcttaaaacacatagtgggaacttgagaagggatcata
gaatttggagtttaagaatgaattgccccactactcctggccacttgggc
tctcagtttggaactgatcatgtctccctacaatatctgagtacccagcc
accctaatacagcttcatcacctagaagcccataatatatcaattatgta
taaaacacgtgttcaaaaatctgtatagtataagatctatcagaaggaat
atggctttgctgacattgttcttcctgagtttagtgtagatgaggaaaaa
actaaccagatgaaacagcacaagagaaagatagtcactgtggctgctgg
tcactgatgtggctctttatggtgtcattttcattttttttttttttttt
ttggtttttttgagacagggtttctctgtgtagctctggctgtcctggaa
ctcactttgtagaccaggctggcctcaaactcagaaatccgcctgcctct
gcctcccaagtgctgggatcaaaaggcgtgcgccaccacgcccggctatg
gtgtcatttttcaaaacatgctttgtacacagaagtattgggtcaag
gaattctctggcgttagtgttacctgtcattttgtaatgaactgagatag
ggtggcagtgaggttgctgagagtggagtcacaaaatgcagagaggtgtg
aagtcccccagtagagtgaatgtccttcatgaacttgcccagctctagtg
atgtgctaaggactgtgtagttcctttcctgtgaagtcctgtggagctct
gggcagacacatcttctccagctgctagatgtcagagtgtgtcatagaca
gaaagcaagagtccttctccctctctttagataccctaaggcctgggagg
tagaaagttaaaaacaaactccccaccatgagccgtaatggctggagcaa
aattctggacttactgtttgagacaggctttcatcctgaaagttgtttgg
ccttaaacttactctgcagcccagggtaacaattctactacctcagcctt
ccaaaaggtgagattaaggtccaacatcaccatgcctagcaagtatgacg
tcttgactgacagctcccagaacaaagcacatgtgttggagaaggaacca
tgactgtctgtcatatccagcccggcttgttggcatgtgctagaacatcc
acacaaaacatttttaattttttaaaatttattttaacttcattgtctat
gagtattttgcctacatgtatgtgtgtgtaccacatgcatgtccggtacc
cacaaaaaaaggaggggcagcagatcttttagaattggagttaagaacag
ttataaactgccatgtaagtctgagaccaaagccctggtcctctgtaaga
atagccagtgtttttaaacactcagccatctttctcagctgttctcctct
ttcagaatataaacacgtgtatatggttttatgtatttttctatattaaa
aataaccctagaaatccaaatggaaggagttacagagacaaagtttggag
ctgagacaaaggatggaccgtctagtgactgccatattccggagatccat
ctcaataatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_52027690_52028484
seq2: B6Ng01-108G22.b_44_840 (reverse)

seq1  CTTGACCCAATACATCTGTGTAC-AAGCATGTATTTGAAAATGACACCAT  49
      ||||||||||||| ||||||||| |||||||| ||  |||||||||||||
seq2  CTTGACCCAATACTTCTGTGTACAAAGCATGTTTTGAAAAATGACACCAT  50

seq1  AGCCGGGCGTGGTGGCGCACGCC-TTTGATCCCAGCACTTGGGAGGCAGA  98
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGCCGGGCGTGGTGGCGCACGCCTTTTGATCCCAGCACTTGGGAGGCAGA  100

seq1  GGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTC  150

seq1  CAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCAAAAAAACCAAAAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCAAAAAAACCAAAAA  200

seq1  AAAAAAAAAAAAAATGAAAATGACACCATAAAGAGCCACATCAGTGACCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAATGAAAATGACACCATAAAGAGCCACATCAGTGACCA  250

seq1  GCAGCCACAGTGACTATCTTTCTCTTGTGCTGTTTCATCTGGTTAGTTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCACAGTGACTATCTTTCTCTTGTGCTGTTTCATCTGGTTAGTTTT  300

seq1  TTCCTCATCTACACTAAACTCAGGAAGAACAATGTCAGCAAAGCCATATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATCTACACTAAACTCAGGAAGAACAATGTCAGCAAAGCCATATT  350

seq1  CCTTCTGATAGATCTTATACTATACAGATTTTTGAACACGTGTTTTATAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGATAGATCTTATACTATACAGATTTTTGAACACGTGTTTTATAC  400

seq1  ATAATTGATATATTATGGGCTTCTAGGTGATGAAGCTGTATTAGGGTGGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGATATATTATGGGCTTCTAGGTGATGAAGCTGTATTAGGGTGGC  450

seq1  TGGGTACTCAGATATTGTAGGGAGACATGATCAGTTCCAAACTGAGAGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACTCAGATATTGTAGGGAGACATGATCAGTTCCAAACTGAGAGCC  500

seq1  CAAGTGGCCAGGAGTAGTGGGGCAATTCATTCTTAAACTCCAAATTCTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGCCAGGAGTAGTGGGGCAATTCATTCTTAAACTCCAAATTCTAT  550

seq1  GATCCCTTCTCAAGTTCCCACTATGTGTTTTAAGAAGACGGTGCTCTCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTTCTCAAGTTCCCACTATGTGTTTTAAGAAGACGGTGCTCTCAG  600

seq1  AAAGTGTAGGTACCATATGATCACAGTAGAATGTATAGACTAGGTTGCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTAGGTACCATATGATCACAGTAGAATGTATAGACTAGGTTGCAG  650

seq1  TTCTCTGAATACAAAGACCAGCACTGGGAAAGTTAATAAAACTGTGCTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAATACAAAGACCAGCACTGGGAAAGTTAATAAAACTGTGCTAA  700

seq1  CAGAATAACAAATACCATCATTCTACTCCTAAGCTTCTGCATGCCCGTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAACAAATACCATCATTCTACTCCTAAGCTTCTGCATGCCCGTGC  750

seq1  ATGAAGGAGAGCCTGAAAAGAGAGATATGTAGAAGGTGTTGGAATTC  795
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAGAGCCTGAAAAGAGAGATATGTAGAAGGTGTTGGAATTC  797

seq1: chr17_51848541_51849551
seq2: B6Ng01-108G22.g_66_1077

seq1  GAATTCTCTGGCGTTAGTGTTACCTGTCATTTTGTAATGAACTGAGATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGCGTTAGTGTTACCTGTCATTTTGTAATGAACTGAGATAG  50

seq1  GGTGGCAGTGAGGTTGCTGAGAGTGGAGTCACAAAATGCAGAGAGGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAGTGAGGTTGCTGAGAGTGGAGTCACAAAATGCAGAGAGGTGTG  100

seq1  AAGTCCCCCAGTAGAGTGAATGTCCTTCATGAACTTGCCCAGCTCTAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCCCAGTAGAGTGAATGTCCTTCATGAACTTGCCCAGCTCTAGTG  150

seq1  ATGTGCTAAGGACTGTGTAGTTCCTTTCCTGTGAAGTCCTGTGGAGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTAAGGACTGTGTAGTTCCTTTCCTGTGAAGTCCTGTGGAGCTCT  200

seq1  GGGCAGACACATCTTCTCCAGCTGCTAGATGTCAGAGTGTGTCATAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGACACATCTTCTCCAGCTGCTAGATGTCAGAGTGTGTCATAGACA  250

seq1  GAAAGCAAGAGTCCTTCTCCCTCTCTTTAGATACCCTAAGGCCTGGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAGAGTCCTTCTCCCTCTCTTTAGATACCCTAAGGCCTGGGAGG  300

seq1  TAGAAAGTTAAAAACAAACTCCCCACCATGAGCCGTAATGGCTGGAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTTAAAAACAAACTCCCCACCATGAGCCGTAATGGCTGGAGCAA  350

seq1  AATTCTGGACTTACTGTTTGAGACAGGCTTTCATCCTGAAAGTTGTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGACTTACTGTTTGAGACAGGCTTTCATCCTGAAAGTTGTTTGG  400

seq1  CCTTAAACTTACTCTGCAGCCCAGGGTAACAATTCTACTACCTCAGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAACTTACTCTGCAGCCCAGGGTAACAATTCTACTACCTCAGCCTT  450

seq1  CCAAAAGGTGAGATTAAGGTCCAACATCACCATGCCTAGCAAGTATGACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGTGAGATTAAGGTCCAACATCACCATGCCTAGCAAGTATGACG  500

seq1  TCTTGACTGACAGCTCCCAGAACAAAGCACATGTGTTGGAGAAGGAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACTGACAGCTCCCAGAACAAAGCACATGTGTTGGAGAAGGAACCA  550

seq1  TGACTGTCTGTCATATCCAGCCCGGCTTGTTGGCATGTGCTAGAACATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTCTGTCATATCCAGCCCGGCTTGTTGGCATGTGCTAGAACATCC  600

seq1  ACACAAAACATTTTTAATTTTTTAAAATTTATTTTAACTTCATTGTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAACATTTTTAATTTTTTAAAATTTATTTTAACTTCATTGTCTAT  650

seq1  GAGTATTTTGCCTACATGTATGTGTGTGTACCACATGCATGTCCGGTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTTGCCTACATGTATGTGTGTGTACCACATGCATGTCCGGTACC  700

seq1  CACAAAAAAAGGAGGGGCAGCAGATCTTTTAGAATTGGAGTTAAGAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAAAGGAGGGGCAGCAGATCTTTTAGAATTGGAGTTAAGAACAG  750

seq1  TTATAAACTGCCATGTAAGTCTGAGACCAAAGCCCTGGTCCTCTGTAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACTGCCATGTAAGTCTGAGACCAAAGCCCTGGTCCTCTGTAAGA  800

seq1  ATAGCCAGTGTTTTTAAACACTCAGCCATCTTTCTCAGCTGTTCTCCTC-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATAGCCAGTGTTTTTAAACACTCAGCCATCTTTCTCAGCTGTTCTCCTCT  850

seq1  TTCAGAATATAAACACGTGTATATGGTTTTATGTATTTTTCTATATTAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATATAAACACGTGTATATGGTTTTATGTATTTTTCTATATTAAA  900

seq1  AATAACCCTAGAAAATCCAAATGGAAGGAGTTACAGAGACAAAGTTTGGA  949
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATAACCCTAG-AAATCCAAATGGAAGGAGTTACAGAGACAAAGTTTGGA  949

seq1  GCTGAGACAAAAGGATGGACCGTCTAGTGACTGCCATA-TCCGGAGATCC  998
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  GCTGAGAC-AAAGGATGGACCGTCTAGTGACTGCCATATTCCGGAGATCC  998

seq1  ATC-CCATAATCAG  1011
      ||| | ||||||||
seq2  ATCTCAATAATCAG  1012