BAC Information

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BAC

Clone NameB6Ng01-108H17
Chromosome17 (Build37)4 (Build37)
Map Location 83,182,664 - 83,183,726101,517,991 - 101,518,318
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG668832, LOC100043707, LOC625467, LOC668836, EG433141, EG625514
Downstream geneLOC100043711, LOC100043900, AW548124, EG545226, Eml4, Cox7a2l, Kcng3, Mta3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108H17.bB6Ng01-108H17.g
ACCDH915656DH915657
length1,0701,040
definitionDH915656|Mus musculus domesticus DNA, BAC clone: B6Ng01-108H17, 5' end.DH915657|Mus musculus domesticus DNA, BAC clone: B6Ng01-108H17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(83,182,664 - 83,183,726)(101,517,991 - 101,518,318)
sequence
gaattcaggatgcctgagggctctgccttacataacacatttataagacc
accccttaaggctcagagaacattccagaagatgcagtggaaagactatc
tgtaagagccagaagataggaaggactaccatgaactcacagcatttgca
gtttgagttcacgcaatgggccatataatgggcccacatacactgggtca
acctaaccatcagctgtagttggagaaaaggcccaccagagtctacttct
tactgaggatacttgcaaataacagattccaggagagcggcatagcaccc
tgttgtgtacttactggaagcccatcaaacccaaggctgtatagaacatc
caactacacaaaaagttgtgaacacaagaaatattatttaaggaaaagga
taggctagaaagagtgggagagaaataagacaaaggggaaagaaaccaaa
atgcattatatgcatgtataaaattgtcaatgaagaaaatgtattaataa
tgtgaatgttacatggcaaattgaacattatagaaattattaaagccaga
atattaattttttaaaaggccatcttaccaaaagcaaatctacagattca
atgtaatccccaacaaatttcaataccattcttcacagacatggaaagaa
caattcttaacttcatatggggaaaaaaaacaggatagccaaaacatttt
tcagcaataaaagaacttctggagaaaccaccatgcaaccatcccagacc
ttaagctctaatacagaataatagtgttaaaaaccacacggtattggtac
agagtcagacaggtttattaatggaatataatcaaagacccagaaataaa
accatacacctatgggtacttgatctttgacaaagaagctaaactcatac
aatggaaaaaagaaagcatcttcaataaatggtgctgatctaactagtag
tctgcatgtagaaaatgcaaattgatccatatttatcaacttgtacaaag
ttcaagtccaggtggatcaaggacctcaacataaaatcatacactgaatc
taatagaagagaagtgggaa
gaattcatccttggaaactgtaagccccaaataaacttttttttccctta
taagttgttcttgtcatggtgttttatcacaatgatagaaaaataagaca
atagcagtgttagaattgttcagtcatttcccactggaaacagtgatcaa
ctagagctcttcctcacacagtgcttatgtgaaaacccttttgcattgag
ctcttatctgcacatactgatgcagtcaggctgttccataacatagagtc
ttccaacacaggctgtatgccattctgggacgcttcaactttttgagtgc
tttcccagaaagaaaagaaaacaatacataaagttttggaggaaaaaaaa
atctctttttctgccatgaagttcaatggatttgaaagatgtgtacacat
gagtggttttgctttctggaaagaccttttctgttttgtcacatcaacac
atcctcaagtttctctgaatctcaagtaatcattggtcattttcctggct
ctataattttgcctgctgtagaaattcatgtagttgagatcagatatgta
gatttttctttttcttagcaataggtaataaagatgactctgtttttttt
tcatgggctgacagttcttatcttttaaaactgacaaatagcatcccgtt
ttactaatgactcagtttgttaatccaattctgaaggtctaactaccagt
ttgccagggacacagagatctattagatggtgtcagagaccatcccttga
gaaagtgagccctccacaatctccctaacaggccaaatggcctcgtgcta
ggagctagttaacacccccttcctccctattcccttcctggcacctaagg
ctgtaaaagctgaattatagtcccctcttccctatctcttcctgaactcc
catgccatccaaggacatgagttacgcctgagcccagcctgatccccagc
tgtcagagatcgatgtccagagatagatgcagagtgccgctgctgcgctg
actcgcccatgtcagcagtgccactcttgttctttgtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_83182664_83183726
seq2: B6Ng01-108H17.b_39_1099

seq1  GAATTCAGGATGCCTGAGGGCTCTGCCTTACATAACACATTTATAAGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGATGCCTGAGGGCTCTGCCTTACATAACACATTTATAAGACC  50

seq1  ACCCCTTAAGGCTCAGAGAACATTCCAGAAGATGCAGTGGAAAGACTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTAAGGCTCAGAGAACATTCCAGAAGATGCAGTGGAAAGACTATC  100

seq1  TGTAAGAGCCAGAAGATAGGAAGGACTACCATGAACTCACAGCATTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAGCCAGAAGATAGGAAGGACTACCATGAACTCACAGCATTTGCA  150

seq1  GTTTGAGTTCACGCAATGGGCCATATAATGGGCCCACATACACTGGGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTTCACGCAATGGGCCATATAATGGGCCCACATACACTGGGTCA  200

seq1  ACCTAACCATCAGCTGTAGTTGGAGAAAAGGCCCACCAGAGTCTACTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACCATCAGCTGTAGTTGGAGAAAAGGCCCACCAGAGTCTACTTCT  250

seq1  TACTGAGGATACTTGCAAATAACAGATTCCAGGAGAGCGGCATAGCACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGGATACTTGCAAATAACAGATTCCAGGAGAGCGGCATAGCACCC  300

seq1  TGTTGTGTACTTACTGGAAGCCCATCAAACCCAAGGCTGTATAGAACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTACTTACTGGAAGCCCATCAAACCCAAGGCTGTATAGAACATC  350

seq1  CAACTACACAAAAAGTTGTGAACACAAGAAATATTATTTAAGGAAAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTACACAAAAAGTTGTGAACACAAGAAATATTATTTAAGGAAAAGGA  400

seq1  TAGGCTAGAAAGAGTGGGAGAGAAATAAGACAAAGGGGAAAGAAACCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTAGAAAGAGTGGGAGAGAAATAAGACAAAGGGGAAAGAAACCAAA  450

seq1  ATGCATTATATGCATGTATAAAATTGTCAATGAAGAAAATGTATTAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTATATGCATGTATAAAATTGTCAATGAAGAAAATGTATTAATAA  500

seq1  TGTGAATGTTACATGGCAAATTGAACATTATAGAAATTATTAAAGCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGTTACATGGCAAATTGAACATTATAGAAATTATTAAAGCCAGA  550

seq1  ATATTAATTTTTTAAAAGGCCATCTTACCAAAAGCAAATCTACAGATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATTTTTTAAAAGGCCATCTTACCAAAAGCAAATCTACAGATTCA  600

seq1  ATGTAATCCCCAACAAATTTCAATACCATTCTTCACAGACATGGAAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATCCCCAACAAATTTCAATACCATTCTTCACAGACATGGAAAGAA  650

seq1  CAATTCTTAACTTCATATGGGGAAAAAAAACAGGATAGCCAAAACATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTAACTTCATATGGGGAAAAAAAACAGGATAGCCAAAACATTTT  700

seq1  TCAGCAATAAAAGAACTTCTGGAGAAACCACCATGCAACCATCCCAGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAATAAAAGAACTTCTGGAGAAACCACCATGCAACCATCCCAGACC  750

seq1  TTAAGCTCTAATACAGAATAATAGTGTTAAAAACCACACGGTATTGGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTCTAATACAGAATAATAGTGTTAAAAACCACACGGTATTGGTAC  800

seq1  AGAGTCAGACAGGTTTATTAATGGAATATAATCAAAGACCCAGAAATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAGACAGGTTTATTAATGGAATATAATCAAAGACCCAGAAATAAA  850

seq1  ACCATACACCTATGGGTACTTGATCTTTGACAAAGAAGCTAAACTCATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACACCTATGGGTACTTGATCTTTGACAAAGAAGCTAAACTCATAC  900

seq1  AATGGAAAAAAAGAAAGCATCTTCAATAAATGGTGCTGATCTAACTAGTA  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGG-AAAAAAGAAAGCATCTTCAATAAATGGTGCTGATCTAACTAGTA  949

seq1  GTCTGCATGTAGAAAAATGCAAATTGATCCATATTTATCAACTTGTACAA  1000
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTCTGCATGTAG-AAAATGCAAATTGATCCATATTTATCAACTTGTACAA  998

seq1  AGTTCAAGTCCAGGTGGATCAAGGACCTCAACATAAAACCATACACTGAA  1050
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGTTCAAGTCCAGGTGGATCAAGGACCTCAACATAAAATCATACACTGAA  1048

seq1  TCTAATAGAAGAG  1063
      |||||||||||||
seq2  TCTAATAGAAGAG  1061

seq1: chr4_101517991_101518318
seq2: B6Ng01-108H17.g_795_1104

seq1  TGTCAGAGACCATCCCGTGAGAAAGCGAGCCCTTCACAATCTCCCTGACA  50
      |||||||||||||||| |||||||| ||||||| |||||||||||| |||
seq2  TGTCAGAGACCATCCCTTGAGAAAGTGAGCCCTCCACAATCTCCCTAACA  50

seq1  GGCCAAATGGCCTCGTGCTAAGGAGCTGGTTATCACTCCC-TCCTCCGTA  99
      ||||||||||||||||||| ||||||| |||| ||| ||| |||||| ||
seq2  GGCCAAATGGCCTCGTGCT-AGGAGCTAGTTAACACCCCCTTCCTCCCTA  99

seq1  TTCCCTTCCTGGCACCTGAGGCTGTAAAAGCTGAATTATAGTCCCCTCTT  149
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTCCCTTCCTGGCACCTAAGGCTGTAAAAGCTGAATTATAGTCCCCTCTT  149

seq1  CCCTATCTCTTCCTGAACTCCCATGCCAACCAAGGACATGAGTTACGCCT  199
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCCTATCTCTTCCTGAACTCCCATGCCATCCAAGGACATGAGTTACGCCT  199

seq1  GAGCCCAGCCTGACACCCAAGGCTGTCAAGGAGGATCGATGTTCCGGAGA  249
      |||||||||||||  ||||  |||||||  || |||||||| ||| ||||
seq2  GAGCCCAGCCTGATCCCCA--GCTGTCA--GA-GATCGATG-TCCAGAGA  243

seq1  TAAGATGCAGAGTGCCCGCTGCCTGGCACCTGACTTCGGCCCCATGTCAG  299
      | |||||||||||| |||||||   |   ||||| |||  ||||||||||
seq2  T-AGATGCAGAGTG-CCGCTGCTGCG---CTGAC-TCG--CCCATGTCAG  285

seq1  CAGATGCCCGCTTCTTTGTTCTTTGTAAA  328
      ||| || || ||   ||||||||||||||
seq2  CAG-TG-CCACT--CTTGTTCTTTGTAAA  310