BAC Information

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BAC

Clone NameB6Ng01-109D07
Chromosome1 (Build37)17 (Build37)
Map Location 101,042,794 - 101,043,89584,058,032 - 84,058,115
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
Downstream geneC230078M14Rik, LOC633295
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109D07.bB6Ng01-109D07.g
ACCDH916173DH916174
length1,084710
definitionDH916173|Mus musculus domesticus DNA, BAC clone: B6Ng01-109D07, 5' end.DH916174|Mus musculus domesticus DNA, BAC clone: B6Ng01-109D07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(101,042,794 - 101,043,895)(84,058,032 - 84,058,115)
sequence
gaattcacatttatggccatattttaaaggacttcagatgattacaagca
gatgtgttttactccatgctaaactaaattataactatcgcacaaactcc
catcatgaagattatggcggtttgaacaggaatggtgatttttttttgtt
aattcttaactcaaagtgagtggaactactaggatgcgtagccatgtttg
agtaggtgtggccttgttggacaagagtggtagtgtgaagttggtctttg
aggtcttataatctccagtctatcagtcttccttctgatacctgaggatg
taaaactcccagttatctctccaacactgggtcagcttgcatgcagacat
gtttctcccatgatgataaacatctgaagtgtaagccatcgccagttaaa
tgggattttttctatcttattttttaaaacatattttctttatttgcatt
tcaaatattatcccctttcctagtttcccctccaaaaatctactatcccc
tccccattcccactgctccctgacccacccctcccactttctggccctgg
cattcccctacactgtagcatagaatcttcacagggccaaagtcctctcc
tcccattgatgaccaactaggtcgttctctgttacatatgctgctagaga
tatgagtcccaccatgtgttttctttgattggtggtttagtccaagggag
ctctggggatactggttagttcacattgttgtttctcctatgaagctgca
aatcacttcagctccttgggtactttaagagttgccctgggcatgaggac
tctttgcagtaataaaaagaactaattatctcattttaaatctttatcta
tggagtataaactaattttgtgacttcagcattcatgtagttccagtggc
attctgacatcttaaacttcaacctgctaaagtctacttttctaattaaa
cagtttggtctttttgtttgtttgatttgcttctattttgattatatgaa
agatatagtacaagagtgagctcattaaagaattttatattttttagtct
ttctcagggtagttaacttccctttattcctgtt
gaattctgtgctaaagccatcaggcccagggctttgcttcccccccaccc
ccggttggatttcttttaatgtatgtattttggttttttttaggagttat
aggatttttttgatagtttacctgatcttgatttaattttgttacttcgt
atctatttataaaatcatccatttcattgagattttcaatttttgtagat
tacaagcttttaaagtaagacccgttgattctttgaatttcctcactgtg
ttattttatctcccttttaattgctgattttgttaatattggtactgtct
ctctgctctttagttagttagcctaagggcttgtctagcctgatgatttt
ctcaaaaaacaaataaaaaacctagttcttaattttctttactcttccta
ttctttgtatttaactgattgttttcaggtctgaacttgattattttctg
ccatctattgctcatagatatgtttgtttctttgtctctctctctctctc
tctctctttttctgaagttttcaggtgtattttaaaatcattattattaa
aattctccaatttctttataacggcactaaatgctatgaaattctctttt
agcactcctttcatagtattccataagtttgtgtatgttgtggctacatt
ttcattaaattctagaaagtctttaatttctttgtttttttatttgtgtg
tgtgtgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_101042794_101043895
seq2: B6Ng01-109D07.b_48_1131

seq1  GAATTCACATTTATGGCCATATTTTAAAGGACTTCAGATGATTACAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTATGGCCATATTTTAAAGGACTTCAGATGATTACAAGCA  50

seq1  GATGTGTTTTACTCCATGCTAAACTAAATTATAACTATCGCACAAACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTTTTACTCCATGCTAAACTAAATTATAACTATCGCACAAACTCC  100

seq1  CATCATGAAGATTATGGCGGTTTGAACAGGAATGGTGATTTTTTTTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGAAGATTATGGCGGTTTGAACAGGAATGGTGATTTTTTTTTGTT  150

seq1  AATTCTTAACTCAAAGTGAGTGGAACTACTAGGATGCGTAGCCATGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTAACTCAAAGTGAGTGGAACTACTAGGATGCGTAGCCATGTTTG  200

seq1  AGTAGGTGTGGCCTTGTTGGACAAGAGTGGTAGTGTGAAGTTGGTCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTGTGGCCTTGTTGGACAAGAGTGGTAGTGTGAAGTTGGTCTTTG  250

seq1  AGGTCTTATAATCTCCAGTCTATCAGTCTTCCTTCTGATACCTGAGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTATAATCTCCAGTCTATCAGTCTTCCTTCTGATACCTGAGGATG  300

seq1  TAAAACTCCCAGTTATCTCTCCAACACTGGGTCAGCTTGCATGCAGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTCCCAGTTATCTCTCCAACACTGGGTCAGCTTGCATGCAGACAT  350

seq1  GTTTCTCCCATGATGATAAACATCTGAAGTGTAAGCCATCGCCAGTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCCCATGATGATAAACATCTGAAGTGTAAGCCATCGCCAGTTAAA  400

seq1  TGGGATTTTTTCTATCTTATTTTTTAAAACATATTTTCTTTATTTGCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTTTTCTATCTTATTTTTTAAAACATATTTTCTTTATTTGCATT  450

seq1  TCAAATATTATCCCCTTTCCTAGTTTCCCCTCCAAAAATCTACTATCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATTATCCCCTTTCCTAGTTTCCCCTCCAAAAATCTACTATCCCC  500

seq1  TCCCCATTCCCACTGCTCCCTGACCCACCCCTCCCACTTTCTGGCCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATTCCCACTGCTCCCTGACCCACCCCTCCCACTTTCTGGCCCTGG  550

seq1  CATTCCCCTACACTGTAGCATAGAATCTTCACAGGGCCAAAGTCCTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCCTACACTGTAGCATAGAATCTTCACAGGGCCAAAGTCCTCTCC  600

seq1  TCCCATTGATGACCAACTAGGTCGTTCTCTGTTACATATGCTGCTAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTGATGACCAACTAGGTCGTTCTCTGTTACATATGCTGCTAGAGA  650

seq1  TATGAGTCCCACCATGTGTTTTCTTTGATTGGTGGTTTAGTCCAAGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTCCCACCATGTGTTTTCTTTGATTGGTGGTTTAGTCCAAGGGAG  700

seq1  CTCTGGGGATACTGGTTAGTTCACATTGTTGTTTCTCCTATGAAGCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGATACTGGTTAGTTCACATTGTTGTTTCTCCTATGAAGCTGCA  750

seq1  AATCACTTCAGCTCCTTGGGTACTTTAAGAGTTGCCCTGGGCATGAGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTTCAGCTCCTTGGGTACTTTAAGAGTTGCCCTGGGCATGAGGAC  800

seq1  TCTTTGCAGTAATAAAAAGAACTAATTATCTCATTTTAAATCTTTATCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCAGTAATAAAAAGAACTAATTATCTCATTTTAAATCTTTATCTA  850

seq1  TGGAGTATAAACTAATTTTGTGACTTCAGCATTCATGTAGTTCCAGTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTATAAACTAATTTTGTGACTTCAGCATTCATGTAGTTCCAGTGGC  900

seq1  ATTCTGACATCTTAAAACTTCAACCTGCTAAAGTCTACTTTTCTAATTAA  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTCTGACATCTT-AAACTTCAACCTGCTAAAGTCTACTTTTCTAATTAA  949

seq1  ACAGTTTGGTTCTTTTTGTTTGTTTGATTTTGCTTCTATTTTGAATTAAT  1000
      ||||||||| ||||||||||||||||| ||||||||||||||||  | ||
seq2  ACAGTTTGG-TCTTTTTGTTTGTTTGA-TTTGCTTCTATTTTGA--TTAT  995

seq1  ATTGAAAGATATAAGGTACAAAGAGTTGAGCTTCATTATAGAATTTTTAT  1050
      | |||||||||||  |||| ||||| ||||| |||||| |||| ||||||
seq2  A-TGAAAGATATA--GTAC-AAGAG-TGAGC-TCATTAAAGAA-TTTTAT  1038

seq1  ATTTTTTTAGTTCTTTCTCAGTGTAGTTTTAACCTTCCCTTTATCTCCTG  1100
      | |||||||| |||||||||| ||||||   | ||||||||||| |||||
seq2  A-TTTTTTAG-TCTTTCTCAGGGTAGTT---AACTTCCCTTTAT-TCCTG  1082

seq1  TT  1102
      ||
seq2  TT  1084

seq1: chr17_84058032_84058115
seq2: B6Ng01-109D07.g_551_776 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  CCCACACACACACACAAATAAAAAAACAAAGAAATTAAAGACTTTCTAGA  50

seq1  ----------------CCCACACACACACACAA-----------------  17
                       ||||| ||| ||||||                 
seq2  ATTTAATGAAAATGTAGCCACA-ACATACACAAACTTATGGAATACTATG  99

seq1  AAA--------AAAAAAGATTTACAT---ATTT-------TTAT------  43
      |||        |||| ||| || |||   ||||       ||||      
seq2  AAAGGAGTGCTAAAAGAGAATTTCATAGCATTTAGTGCCGTTATAAAGAA  149

seq1  -TTG----CTTGT-------ATG---------------TG---------G  57
       |||     || |       |||               ||         |
seq2  ATTGGAGAATTTTAATAATAATGATTTTAAAATACACCTGAAAACTTCAG  199

seq1  AGAAAGAGAGAGAGAGAGAGAGAGAGA  84
      | |||||||||||||||||||||||||
seq2  AAAAAGAGAGAGAGAGAGAGAGAGAGA  226