BAC Information

Click to search

BAC

Clone NameB6Ng01-109M15
Chromosome17 (Build37)
Map Location 27,111,122 - 27,342,285
singlet/doubletdoublet
Overlap geneZbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2
Upstream gene1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1
Downstream geneLOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109M15.bB6Ng01-109M15.g
ACCDH916599DH916600
length1,006938
definitionDH916599|Mus musculus domesticus DNA, BAC clone: B6Ng01-109M15, 5' end.DH916600|Mus musculus domesticus DNA, BAC clone: B6Ng01-109M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,111,122 - 27,112,124)(27,341,349 - 27,342,285)
sequence
gaattctgttctccctgagagccccgctggaggggaggggagtgaactag
aaggaatgttacagattcaggtgaaagtagaggaggaagaggagcagggg
tcagcagctccactctttcagactcctcagccggagagagtgtcgggagg
ggtttcccaagcttgtggatcccacccattgcctacacctgctcttccca
gcaagccttcagaggatgagagctcaacagtagatcctcctgcccctcct
gtacaagcttcccaaatcttatatgtgaatcaggaaaacgttgagtgtaa
ggaggagatagcaagaggcacaaaggaaaagaccaaagtactatctggag
aggactctgaggagaaggaggagctgagatacttgctgtcctcaggagga
ggggaatcgtctggggcaggagatccatcgtggaaaccagtggatcttca
tgggaatgaaatcctgtcaggggatggaggacctggaggaacagggcagg
ctatgcatgggcctgtgaagctaggagggacaccccctgcagatgggaag
tgctttgcttgcttgtgtggaaaacggtttgcagtaaagccgaaacgaga
ccgacacatcatgttgacgttcagccttcgcccttttggatgtggcatct
gtaataaacgtttcaagttgaagcatcatctaacagagcacatgaagacc
catgcgagagctctgcatgcgtgtccccattgtggccgtcgattccgtgt
ccaggccttctttccttcgccaccgggacttatgcaaggccagggcttgg
cccacttaccactggacttacaaatgactactggtgctctctagtgattt
taggacaagatagcccctgctgctgctggactcttaccttcaccacctca
gtcctggattgtaataatcattccaagagattatatatattgtcatgaac
cctttactcttgggtatgggtctcacccttggtagtccagggtttagaca
gacttt
gaattccaacatttacgggaacctagggcataggtatttgcccctaagag
ttcagagtatagggatccacctatgaggacattttgggtcacccgtggcc
acagaggatcaatctgtctcagagttgcaccttaaaaaaatatatttatt
ttatgtgcgagtgttttacccacttgtatgtgcaccaggttcataccatg
ccagcagagaccggaagagaaagataccagatcttctggaattggaattg
tccatgacgtgaccagccactgatgtccaaaccctagctcctctgtaagt
gttgttacgcccagagtcttctatctctccagtcccaagggtgcacactc
ctgaagtttcagtgtcgaccaagtgcatgcctgaagctggcctgaagcag
cagtcaagataaggtcttggagagcatgccgggcggttactccaccaccc
aaatccgacacacagcctcgacgcccatccggagactggcaagtgggccg
gatctctattaatgggcggtggttttcttacaccattgagctcatccatt
aagtaaaatcaacattccattgaacgtttaccacgtgctaacgctgcgtt
aggataaacactgctaggtctgacagataaaagataaagctagagggcgg
gggggaagagatgaaagcacctgcacacacaagtaaaacaaaacaaaaca
gtaaccaaccaaccctttgacctcaccaacatgggcggcgccaggccgac
acagacgcctttcatcatggcggacatagcctccatgcgccgcccttccc
aatatggcgtccgtggcgcccttcccatcatggcggcggccccgcccgct
ccgccgcggctgccggcgggagcagtccgggtgcggtgcgcgccgggggc
gggcgagggggcgggtcctgggcatggccgggctgtcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_27111122_27112124
seq2: B6Ng01-109M15.b_49_1054

seq1  GAATTCTGTTCTCCCTGAGAGCCCCGCTGGAGGGGAGGGGAGTGAACTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCTCCCTGAGAGCCCCGCTGGAGGGGAGGGGAGTGAACTAG  50

seq1  AAGGAATGTTACAGATTCAGGTGAAAGTAGAGGAGGAAGAGGAGCAGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGTTACAGATTCAGGTGAAAGTAGAGGAGGAAGAGGAGCAGGGG  100

seq1  TCAGCAGCTCCACTCTTTCAGACTCCTCAGCCGGAGAGAGTGTCGGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCTCCACTCTTTCAGACTCCTCAGCCGGAGAGAGTGTCGGGAGG  150

seq1  GGTTTCCCAAGCTTGTGGATCCCACCCATTGCCTACACCTGCTCTTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCCAAGCTTGTGGATCCCACCCATTGCCTACACCTGCTCTTCCCA  200

seq1  GCAAGCCTTCAGAGGATGAGAGCTCAACAGTAGATCCTCCTGCCCCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCTTCAGAGGATGAGAGCTCAACAGTAGATCCTCCTGCCCCTCCT  250

seq1  GTACAAGCTTCCCAAATCTTATATGTGAATCAGGAAAACGTTGAGTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGCTTCCCAAATCTTATATGTGAATCAGGAAAACGTTGAGTGTAA  300

seq1  GGAGGAGATAGCAAGAGGCACAAAGGAAAAGACCAAAGTACTATCTGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGATAGCAAGAGGCACAAAGGAAAAGACCAAAGTACTATCTGGAG  350

seq1  AGGACTCTGAGGAGAAGGAGGAGCTGAGATACTTGCTGTCCTCAGGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTGAGGAGAAGGAGGAGCTGAGATACTTGCTGTCCTCAGGAGGA  400

seq1  GGGGAATCGTCTGGGGCAGGAGATCCATCGTGGAAACCAGTGGATCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATCGTCTGGGGCAGGAGATCCATCGTGGAAACCAGTGGATCTTCA  450

seq1  TGGGAATGAAATCCTGTCAGGGGATGGAGGACCTGGAGGAACAGGGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATGAAATCCTGTCAGGGGATGGAGGACCTGGAGGAACAGGGCAGG  500

seq1  CTATGCATGGGCCTGTGAAGCTAGGAGGGACACCCCCTGCAGATGGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCATGGGCCTGTGAAGCTAGGAGGGACACCCCCTGCAGATGGGAAG  550

seq1  TGCTTTGCTTGCTTGTGTGGAAAACGGTTTGCAGTAAAGCCGAAACGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGCTTGCTTGTGTGGAAAACGGTTTGCAGTAAAGCCGAAACGAGA  600

seq1  CCGACACATCATGTTGACGTTCAGCCTTCGCCCTTTTGGATGTGGCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACACATCATGTTGACGTTCAGCCTTCGCCCTTTTGGATGTGGCATCT  650

seq1  GTAATAAACGTTTCAAGTTGAAGCATCATCTAACAGAGCACATGAAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAACGTTTCAAGTTGAAGCATCATCTAACAGAGCACATGAAGACC  700

seq1  CATGCGAGAGCTCTGCATGCGTGTCCCCATTGTGGCCGTCGATTCCGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGAGAGCTCTGCATGCGTGTCCCCATTGTGGCCGTCGATTCCGTGT  750

seq1  CCAGGCCTTC-TTCCTTCGCCACCGGGACTTATGCAAGGGCCAGGGC-TG  798
      |||||||||| |||||||||||||||||||||||||| ||||||||| ||
seq2  CCAGGCCTTCTTTCCTTCGCCACCGGGACTTATGCAA-GGCCAGGGCTTG  799

seq1  GCCCACTTACCACTGGACTTACAAATGACTACTGGTGCTCTCTAGTGATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTTACCACTGGACTTACAAATGACTACTGGTGCTCTCTAGTGATT  849

seq1  TCTAGGACAAGATAGCCCCTGCTGCTGCTGGACTCTTACCTTCACCACCT  898
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-TAGGACAAGATAGCCCCTGCTGCTGCTGGACTCTTACCTTCACCACCT  898

seq1  CAGTCCTGGATTGT-ATAATCATTCCAAGAGATTATATATATTGTCATGA  947
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGTCCTGGATTGTAATAATCATTCCAAGAGATTATATATATTGTCATGA  948

seq1  ACCCCTTACTCTTGGGTATGGGTCTCACCC-TGGTAGTCCA-GGTTTAGA  995
      |||| ||||||||||||||||||||||||| |||||||||| ||||||||
seq2  ACCCTTTACTCTTGGGTATGGGTCTCACCCTTGGTAGTCCAGGGTTTAGA  998

seq1  CAGACTTT  1003
      ||||||||
seq2  CAGACTTT  1006

seq1: chr17_27341349_27342285
seq2: B6Ng01-109M15.g_66_1003 (reverse)

seq1  CGACAGGCCGGCCATGGCCAGGACACCGCCCCCTCGCCCGCCCCCGGCGC  50
      |||||| ||||||||| ||||||| |||||||||||||||||||||||||
seq2  CGACAGCCCGGCCATGCCCAGGAC-CCGCCCCCTCGCCCGCCCCCGGCGC  49

seq1  GCACCGCACCCGGAACTGCTCCCGCCGGCAGCCGCGGCGGAGCGGGCGGG  100
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCACCGCACCCGG-ACTGCTCCCGCCGGCAGCCGCGGCGGAGCGGGCGGG  98

seq1  GCCGCGCGCCATGATGGGAAGGGCGACCACGGACGCCATATTGGGAAGGG  150
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCCGC-CGCCATGATGGGAAGGGCG-CCACGGACGCCATATTGGGAAGGG  146

seq1  CGGCGCATGGAGGCTATGTCCGCCATGATGAAAGGCGTCTGTGTCGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGCATGGAGGCTATGTCCGCCATGATGAAAGGCGTCTGTGTCGGCCT  196

seq1  GGCGCCG-CCATGTTGGTGAGGTCAAAGGGTTGGTTTGGTTACTGTTTTG  249
      ||||||| |||||||||||||||||||||||||| |||||||||||||||
seq2  GGCGCCGCCCATGTTGGTGAGGTCAAAGGGTTGG-TTGGTTACTGTTTTG  245

seq1  TTTTGTTTTACTTGTGTGTGCAGGTGCTTTCATCTCTT-CCCCCCGCCCT  298
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTTGTTTTACTTGTGTGTGCAGGTGCTTTCATCTCTTCCCCCCCGCCCT  295

seq1  CTAGC-TTATC-TTTATCTGTCAGACCTAGCAGTGTTTATCCTAACGCAG  346
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTTATCTTTTATCTGTCAGACCTAGCAGTGTTTATCCTAACGCAG  345

seq1  CGTTAGCACGTGGTAAACGTTCAATGGAATGTTGA-TTTACTTAATGGAT  395
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CGTTAGCACGTGGTAAACGTTCAATGGAATGTTGATTTTACTTAATGGAT  395

seq1  GAGCTCAATGGTGTAAGAAAACCACCG-CCATTAATAGAGATCCGGCCCA  444
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGCTCAATGGTGTAAGAAAACCACCGCCCATTAATAGAGATCCGGCCCA  445

seq1  CTTGCCAGTCTCCGGATGGGCGTCGAGGCTGTGTGTCGGATTTGGGTGGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAGTCTCCGGATGGGCGTCGAGGCTGTGTGTCGGATTTGGGTGGT  495

seq1  GGAGTAACCGCCCGGCATGCTCTCCAAGACCTTATCTTGACTGCTGCTTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAACCGCCCGGCATGCTCTCCAAGACCTTATCTTGACTGCTGCTTC  545

seq1  AGGCCAGCTTCAGGCATGCACTTGGTCGACACTGAAACTTCAGGAGTGTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCTTCAGGCATGCACTTGGTCGACACTGAAACTTCAGGAGTGTG  595

seq1  CACCCTTGGGACTGGAGAGATAGAAGACTCTGGGCGTAACAACACTTACA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTGGGACTGGAGAGATAGAAGACTCTGGGCGTAACAACACTTACA  645

seq1  GAGGAGCTAGGGTTTGGACATCAGTGGCTGGTCACGTCATGGACAATTCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCTAGGGTTTGGACATCAGTGGCTGGTCACGTCATGGACAATTCC  695

seq1  AATTCCAGAAGATCTGGTATCTTTCTCTTCCGGTCTCTGCTGGCATGGTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGAAGATCTGGTATCTTTCTCTTCCGGTCTCTGCTGGCATGGTA  745

seq1  TGAACCTGGTGCACATACAAGTGGGTAAAACACTCGCACATAAAATAAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTGGTGCACATACAAGTGGGTAAAACACTCGCACATAAAATAAAT  795

seq1  ATATTTTTTTAAGGTGCAACTCTGAGACAGATTGATCCTCTGTGGCCACG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTTAAGGTGCAACTCTGAGACAGATTGATCCTCTGTGGCCACG  845

seq1  GGTGACCCAAAATGTCCTCATAGGTGGATCCCTATACTCTGAACTCTTAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCCAAAATGTCCTCATAGGTGGATCCCTATACTCTGAACTCTTAG  895

seq1  GGGCAAATACCTATGCCCTAGGTTCCCGTAAATGTTGGAATTC  937
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAATACCTATGCCCTAGGTTCCCGTAAATGTTGGAATTC  938