BAC Information

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BAC

Clone NameB6Ng01-109N05
Chromosome17 (Build37)
Map Location 78,565,273 - 78,743,481
singlet/doubletdoublet
Overlap geneLOC383275, Crim1
Upstream geneLOC545234, LOC100043887, LOC668795
Downstream geneFez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109N05.bB6Ng01-109N05.g
ACCDH916623DH916624
length1,066504
definitionDH916623|Mus musculus domesticus DNA, BAC clone: B6Ng01-109N05, 5' end.DH916624|Mus musculus domesticus DNA, BAC clone: B6Ng01-109N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,742,400 - 78,743,481)(78,565,273 - 78,565,782)
sequence
gaattctgaggcctaattgaatctgctaggcctaggacagggagtaggct
ggccaccattgataagcattgactgggtgcagtttacatgatttggctta
attaagtcaccttaaactgatggtgatgatttatggtaacctatggcaat
cagtagtttgcagtccagatttgtctcagacatttactgtgtgccatcag
agctaagacatctgtgtgaatgctcacagtatacttgctgttagcagggg
agcaggtggcatcacagaacactgaacgctgtatgtagcatttgggactt
cttactttctttgacaaaagcctgtctgctacgtgacaaaaagcaaaaca
tcggggttgtatttagctatgtttgccctactggactgacaaaatatcca
tgtgtttaaatgcactcagctgacaaaaatgtatgtatgagagggaatat
tcatattaatatgttactaatgatggtttgaaatatttaagacaaacctc
ttttgcagagtctggagtggcatttgtcttctgctagtcagttattgcat
tcttttagaagttaaaatgaacaggcagaagcaatgttgtcaaaagaaac
aactgaagacacagcaatttgagaaggtgatgcagttgaagagaaaacca
gagagagtagcgatggcaaggtcagcaaacaagccttaggacagaagagc
aatttgaggctggtccaaatgcagggtttgagagagagagaggcaagaac
cctgagagaggaagctgccacggtgagaatggcgacccttgaacaacgtt
ttgtagaatggtaaggtatggatcaactagtgttgtgaggttggcaatga
actgttatttattgggggtatccctgacatataaatgccatactaatgcg
ccagtcgctagggaagccacaactcatttgtctgttccactgacaagtct
acagcctgaaataacatgactctaactgatagtgaatgggttcatatatt
acatagatacttcgtgtagaatcttttgtgagcctagcatctttcatatt
tattactgatttatat
attttctcatcccacatgaagtagacttaatagacttttagcatgacttt
ctccacaatattacaagggaactggagcccaggacaggatatcattttgg
aaaccactagtgtgtttcttataacagaagcaagtactttaacctcaaaa
ttacacaatatctcttagaagttaatgtgagcaataacaatacttttaaa
aatttctattggactggcagccacttcttgagtcaaggagataaattgaa
aagaaatgaaatactaaattcaacaagtccaacatctcaagaagtattac
ttggaaatataaatctgtacaagaaatgttaaaataaccatggaattgtt
tttaccagaaatgtttagaatgcatttatactctactgaggagaatcatg
aaagataaatatatcaattactagacattcatagatatgtgaattcatgg
ataacagtggttatatttgtgtatttgtggggtatgtgtgtgcgtgtgag
tgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_78742400_78743481
seq2: B6Ng01-109N05.b_50_1115 (reverse)

seq1  ATATATATCAGTAAATAAAATATGGAAAGAATGCTAAGGCTCACAAAAGA  50
      ||||| ||||||||   |||||| ||||| ||||| ||||||||||||||
seq2  ATATAAATCAGTAA--TAAATAT-GAAAG-ATGCT-AGGCTCACAAAAGA  45

seq1  TTCTACCACAGAAGTATCTATGTAATATATGAACCCATTTCACCTATCAG  100
      ||||| ||| ||||||||||||||||||||||||||| |||| |||||||
seq2  TTCTA-CAC-GAAGTATCTATGTAATATATGAACCCA-TTCA-CTATCAG  91

seq1  TTAGAGTTCATGTTTAATTTCAGGCTGTAAGACTTGTCAGTGGAACAGGA  150
      |||||| |||||||  |||||||||||| |||||||||||||||||| ||
seq2  TTAGAG-TCATGTT--ATTTCAGGCTGT-AGACTTGTCAGTGGAACA-GA  136

seq1  CAAATGAGTTGTGGCTTCCCTAGCGACTGGCGCATTAGTATGGCATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGTTGTGGCTTCCCTAGCGACTGGCGCATTAGTATGGCATTTAT  186

seq1  ATGTCAGGGATACCCCCAATAAAATAACAGTTCATTTGCCAACCTCACAA  250
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  ATGTCAGGGATACCCCCAAT-AAATAACAGTTCA-TTGCCAACCTCACAA  234

seq1  CACTAGTTGATCCATACCTTACCATTCTACAAAACGTTGTTCAAGGGTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTTGATCCATACCTTACCATTCTACAAAACGTTGTTCAAGGGTCG  284

seq1  CCATTCTCACCGTGGCAGCTTCCTCTCTCAGGGTTCTTGCCTCTCTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTCACCGTGGCAGCTTCCTCTCTCAGGGTTCTTGCCTCTCTCTCT  334

seq1  CTCAAACCCTGCATTTGGACCAGCCTCAAATTGCTCTTCTGTCCTAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACCCTGCATTTGGACCAGCCTCAAATTGCTCTTCTGTCCTAAGGC  384

seq1  TTGTTTGCTGACCTTGCCATCGCTACTCTCTCTGGTTTTCTCTTCAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCTGACCTTGCCATCGCTACTCTCTCTGGTTTTCTCTTCAACTG  434

seq1  CATCACCTTCTCAAATTGCTGTGTCTTCAGTTGTTTCTTTTGACAACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCTTCTCAAATTGCTGTGTCTTCAGTTGTTTCTTTTGACAACATT  484

seq1  GCTTCTGCCTGTTCATTTTAACTTCTAAAAGAATGCAATAACTGACTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGCCTGTTCATTTTAACTTCTAAAAGAATGCAATAACTGACTAGC  534

seq1  AGAAGACAAATGCCACTCCAGACTCTGCAAAAGAGGTTTGTCTTAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAAATGCCACTCCAGACTCTGCAAAAGAGGTTTGTCTTAAATAT  584

seq1  TTCAAACCATCATTAGTAACATATTAATATGAATATTCCCTCTCATACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACCATCATTAGTAACATATTAATATGAATATTCCCTCTCATACAT  634

seq1  ACATTTTTGTCAGCTGAGTGCATTTAAACACATGGATATTTTGTCAGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTGTCAGCTGAGTGCATTTAAACACATGGATATTTTGTCAGTCC  684

seq1  AGTAGGGCAAACATAGCTAAATACAACCCCGATGTTTTGCTTTTTGTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGCAAACATAGCTAAATACAACCCCGATGTTTTGCTTTTTGTCAC  734

seq1  GTAGCAGACAGGCTTTTGTCAAAGAAAGTAAGAAGTCCCAAATGCTACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGACAGGCTTTTGTCAAAGAAAGTAAGAAGTCCCAAATGCTACAT  784

seq1  ACAGCGTTCAGTGTTCTGTGATGCCACCTGCTCCCCTGCTAACAGCAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGTTCAGTGTTCTGTGATGCCACCTGCTCCCCTGCTAACAGCAAGT  834

seq1  ATACTGTGAGCATTCACACAGATGTCTTAGCTCTGATGGCACACAGTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTGAGCATTCACACAGATGTCTTAGCTCTGATGGCACACAGTAAA  884

seq1  TGTCTGAGACAAATCTGGACTGCAAACTACTGATTGCCATAGGTTACCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGACAAATCTGGACTGCAAACTACTGATTGCCATAGGTTACCAT  934

seq1  AAATCATCACCATCAGTTTAAGGTGACTTAATTAAGCCAAATCATGTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATCACCATCAGTTTAAGGTGACTTAATTAAGCCAAATCATGTAAA  984

seq1  CTGCACCCAGTCAATGCTTATCAATGGTGGCCAGCCTACTCCCTGTCCTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCCAGTCAATGCTTATCAATGGTGGCCAGCCTACTCCCTGTCCTA  1034

seq1  GGCCTAGCAGATTCAATTAGGCCTCAGAATTC  1082
      ||||||||||||||||||||||||||||||||
seq2  GGCCTAGCAGATTCAATTAGGCCTCAGAATTC  1066

seq1: chr17_78565273_78565782
seq2: B6Ng01-109N05.g_67_576

seq1  GAATTCATTTTCTCATCCCACATGAAGTAGACTTAATAGACTTTTAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTCTCATCCCACATGAAGTAGACTTAATAGACTTTTAGCAT  50

seq1  GACTTTCTCCACAATATTACAAGGGAACTGGAGCCCAGGACAGGATATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTCCACAATATTACAAGGGAACTGGAGCCCAGGACAGGATATCA  100

seq1  TTTTGGAAACCACTAGTGTGTTTCTTATAACAGAAGCAAGTACTTTAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAAACCACTAGTGTGTTTCTTATAACAGAAGCAAGTACTTTAACC  150

seq1  TCAAAATTACACAATATCTCTTAGAAGTTAATGTGAGCAATAACAATACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTACACAATATCTCTTAGAAGTTAATGTGAGCAATAACAATACT  200

seq1  TTTAAAAATTTCTATTGGACTGGCAGCCACTTCTTGAGTCAAGGAGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATTTCTATTGGACTGGCAGCCACTTCTTGAGTCAAGGAGATAA  250

seq1  ATTGAAAAGAAATGAAATACTAAATTCAACAAGTCCAACATCTCAAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAAGAAATGAAATACTAAATTCAACAAGTCCAACATCTCAAGAAG  300

seq1  TATTACTTGGAAATATAAATCTGTACAAGAAATGTTAAAATAACCATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTGGAAATATAAATCTGTACAAGAAATGTTAAAATAACCATGGA  350

seq1  ATTGTTTTTACCAGAAATGTTTAGAATGCATTTATACTCTACTGAGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTTACCAGAAATGTTTAGAATGCATTTATACTCTACTGAGGAGA  400

seq1  ATCATGAAAGATAAATATATCAATTACTAGACATTCATAGATATGTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAAAGATAAATATATCAATTACTAGACATTCATAGATATGTGAAT  450

seq1  TCATGGATAACAGTGGTTATATTTGTGTATTTGTGGGGTATGTGTGTGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATAACAGTGGTTATATTTGTGTATTTGTGGGGTATGTGTGTGCG  500

seq1  TGTGAGTGTG  510
      ||||||||||
seq2  TGTGAGTGTG  510