BAC Information

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BAC

Clone NameB6Ng01-110C21
Chromosome17 (Build37)
Map Location 64,638,620 - 64,738,526
singlet/doubletdoublet
Overlap genePja2
Upstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2, LOC669778
Downstream geneLOC100043582, Man2a1, 4930583I09Rik, LOC100043871, E130009J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110C21.bB6Ng01-110C21.g
ACCDH916877DH916878
length1,0691,158
definitionDH916877|Mus musculus domesticus DNA, BAC clone: B6Ng01-110C21, 5' end.DH916878|Mus musculus domesticus DNA, BAC clone: B6Ng01-110C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,737,434 - 64,738,526)(64,638,620 - 64,639,822)
sequence
gaattcacatactgtttgatctgatcaggaaagaatttcaaagtataacg
accaatcttatttcttattttagaaatttgcaagaaaaatagagcaggta
caaaaactactaaggataaggtgctgtgtaaagaagatattccctgttcc
ttaaaggttttctctgggaaattatttactagctgaagttgattaaccag
ctgaggtttagaagaacacaaaatgggttccctcatcttgttcgtatgat
acattacattgtgagtaatgattaatctagcttgtcccctggatgtactc
aaagggttaccagtaaaattatttacatgcagtcttttcattactggtct
agaattttgtcaaatatagctaaacattttttcacttagtatagtattgt
aaatatagaacattaagtaaatgtttagaattttcagatcttaaaatttg
ccaaaatgagtatgaacttttgtaaaatcagtaagcatgttccaatcgcc
ttttactggaattgtaggctgcaagatcctcagccaagaaattacatatt
caactcatgccaaaagtccatctcaaaaacatcatccacttaaataatcc
tctatttataccatttaaagtatttaattggctttaatatatgccattta
ttgaggattcactttcaaccaaattggagtccttcttgtcctttttagat
tcttcttgttgtgtgattaaggaaaatagttcattacctatagagtcata
agcagacataaaccagagtgcagctgtctaagtccacttagtgctctcct
ccctaattgcattaggaatatcattcatcttgtcccaaggtctgtggttg
gatgctgtaaggatgcgtttccctgtccactcagatgctgatttgtcttg
tttcatttcctggacagtccaggcattgctatttgtatcacatacattct
gtatacacacataaagggatttgtgtgacatagacagttctctctcccca
aacagatcatagctaaggtcacagtctagtatacaaagcaatatagactg
ttccatttactgacataaa
gaattctgcctgccagacttgtagaaagcaccttttcccattgagccatc
ttttcagccttgaattaaaatttttaaaaaacattttctttgcaaagatg
ctcaagaagttattacttaagactatgtagaaagttctaatatcagctat
aaaaaattaaagatgtttgctattttattttgtgctcactcaaacgtgag
atgctaatatgagtctaatacatattgcaaagatctgcaccaaaagctac
tatgggtctagtactggaaaagaaatagaaataaaagcaagtactgacaa
aagagatgtgttgcttagtacacacataaatgaaagcatgcaggatttgt
ttttgttttgaaaagaattccagtgttgaggttcaacagtataaggggag
acctaaatgaaaatatctgggtttttaattgtggataaatacatttcaaa
ataagtttgtatgttttagtttaagaaaataaaaagaaggtaagaagagg
taacaaatgtgtcccactgctgaaagtgtgcaatgtgtgaaaggaagcca
atctaactgcaaaagtctgtgctctgtggacaccagagcctctctgtgtc
tgtgtgcgttcatgtgtaaacaatcacagtgggagttatccgttagaaag
atacctccatagcctggggctaagcgctcttctagtgccatgtaggtaag
gaactgaggatccacataagaaatagcttcagcaactccaagtccgtctg
caaaaccatcaaacaggctgaaaaaaaaaaaaaaaaaacccaaaagaccc
ataagtatcatttcggaatcttacagtgaagataattttgtactaccata
ttggtaggctgtacaaattttgcaagcagaaacttttgaaatatttgcat
gtgattctatggaccaagaacatgaagacacagaaagctagtataaatat
aagaggtatatagctatggctgacagtctggtgatctcagtgcatacagt
gtgcgatcctccctgtctgctactgactcagaagcctgcttacagcagga
tttactcaatcatcctgtccctatttccttctgtaatttagttcactcgg
ggggaagtgaaattgagaacaaattggatggatcattctaatagagctct
ccaagccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_64737434_64738526
seq2: B6Ng01-110C21.b_41_1109 (reverse)

seq1  TTTATGTCAAGTTAAATGGGAACAGTCCTAATTTAT-TTGCTTTTGTATA  49
      |||||||||   ||||| |||||||||      ||| |||| ||||||||
seq2  TTTATGTCA--GTAAAT-GGAACAGTC------TATATTGC-TTTGTATA  40

seq1  CTTAGACTGTGACCTTTAGCTATGATCCTTGTTTGGGGGAGAGGAAGAAC  99
      | |||||||||||| ||||||||||||  ||||| ||||||||  |||||
seq2  C-TAGACTGTGACC-TTAGCTATGATC--TGTTT-GGGGAGAG--AGAAC  83

seq1  TGGTCTATGTCACCACAAATCCCTTTATGGTGTGGTATACAGAATGTATT  149
      | |||||||||| ||||||||||||||| |||| |||||||||||||| |
seq2  T-GTCTATGTCA-CACAAATCCCTTTAT-GTGT-GTATACAGAATGTA-T  128

seq1  GTGGATACAAATAGCAATGCCTGGACTGTTCCAGGAAATGAAAACAAGAC  199
      || ||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  GT-GATACAAATAGCAATGCCTGGACTG-TCCAGGAAATG-AAACAAGAC  175

seq1  AAATCAGCATCTGAGTGGACAGGGAAACGCATCCTTACAGCATCCAACCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGCATCTGAGTGGACAGGGAAACGCATCCTTACAGCATCCAACCA  225

seq1  CAGACCTTGGGACAAGATGAATGATATTCCTAATGCAATTAGGGAGGAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTTGGGACAAGATGAATGATATTCCTAATGCAATTAGGGAGGAGA  275

seq1  GCACTAAGTGGACTTAGACAGCTGCACTCTGGTTTATGTCTGCTTATGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAAGTGGACTTAGACAGCTGCACTCTGGTTTATGTCTGCTTATGAC  325

seq1  TCTATAGGTAATGAACTATTTTCCTTAATCACACAACAAGAAGAATCTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGGTAATGAACTATTTTCCTTAATCACACAACAAGAAGAATCTAA  375

seq1  AAAGGACAAGAAGGACTCCAATTTGGTTGAAAGTGAATCCTCAATAAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACAAGAAGGACTCCAATTTGGTTGAAAGTGAATCCTCAATAAATG  425

seq1  GCATATATTAAAGCCAATTAAATACTTTAAATGGTATAAATAGAGGATTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATATTAAAGCCAATTAAATACTTTAAATGGTATAAATAGAGGATTA  475

seq1  TTTAAGTGGATGATGTTTTTGAGATGGACTTTTGGCATGAGTTGAATATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTGGATGATGTTTTTGAGATGGACTTTTGGCATGAGTTGAATATG  525

seq1  TAATTTCTTGGCTGAGGATCTTGCAGCCTACAATTCCAGTAAAAGGCGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTTGGCTGAGGATCTTGCAGCCTACAATTCCAGTAAAAGGCGAT  575

seq1  TGGAACATGCTTACTGATTTTACAAAAGTTCATACTCATTTTGGCAAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACATGCTTACTGATTTTACAAAAGTTCATACTCATTTTGGCAAATT  625

seq1  TTAAGATCTGAAAATTCTAAACATTTACTTAATGTTCTATATTTACAATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATCTGAAAATTCTAAACATTTACTTAATGTTCTATATTTACAATA  675

seq1  CTATACTAAGTGAAAAAATGTTTAGCTATATTTGACAAAATTCTAGACCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTAAGTGAAAAAATGTTTAGCTATATTTGACAAAATTCTAGACCA  725

seq1  GTAATGAAAAGACTGCATGTAAATAATTTTACTGGTAACCCTTTGAGTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAAAAGACTGCATGTAAATAATTTTACTGGTAACCCTTTGAGTAC  775

seq1  ATCCAGGGGACAAGCTAGATTAATCATTACTCACAATGTAATGTATCATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGGACAAGCTAGATTAATCATTACTCACAATGTAATGTATCATA  825

seq1  CGAACAAGATGAGGGAACCCATTTTGTGTTCTTCTAAACCTCAGCTGGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACAAGATGAGGGAACCCATTTTGTGTTCTTCTAAACCTCAGCTGGTT  875

seq1  AATCAACTTCAGCTAGTAAATAATTTCCCAGAGAAAACCTTTAAGGAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACTTCAGCTAGTAAATAATTTCCCAGAGAAAACCTTTAAGGAACA  925

seq1  GGGAATATCTTCTTTACACAGCACCTTATCCTTAGTAGTTTTTGTACCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATATCTTCTTTACACAGCACCTTATCCTTAGTAGTTTTTGTACCTG  975

seq1  CTCTATTTTTCTTGCAAATTTCTAAAATAAGAAATAAGATTGGTCGTTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTTTCTTGCAAATTTCTAAAATAAGAAATAAGATTGGTCGTTAT  1025

seq1  ACTTTGAAATTCTTTCCTGATCAGATCAAACAGTATGTGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAAATTCTTTCCTGATCAGATCAAACAGTATGTGAATTC  1069

seq1: chr17_64638620_64639822
seq2: B6Ng01-110C21.g_68_1225

seq1  GAATTCTGCCTGCCAGACTTGTAGAAAGCACCTTTTCCCATTGAGCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTGCCAGACTTGTAGAAAGCACCTTTTCCCATTGAGCCATC  50

seq1  TTTTCAGCCTTGAATTAAAATTTTTAAAAAACATTTTCTTTGCAAAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGCCTTGAATTAAAATTTTTAAAAAACATTTTCTTTGCAAAGATG  100

seq1  CTCAAGAAGTTATTACTTAAGACTATGTAGAAAGTTCTAATATCAGCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAAGTTATTACTTAAGACTATGTAGAAAGTTCTAATATCAGCTAT  150

seq1  AAAAAATTAAAGATGTTTGCTATTTTATTTTGTGCTCACTCAAACGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAAAGATGTTTGCTATTTTATTTTGTGCTCACTCAAACGTGAG  200

seq1  ATGCTAATATGAGTCTAATACATATTGCAAAGATCTGCACCAAAAGCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATATGAGTCTAATACATATTGCAAAGATCTGCACCAAAAGCTAC  250

seq1  TATGGGTCTAGTACTGGAAAAGAAATAGAAATAAAAGCAAGTACTGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTCTAGTACTGGAAAAGAAATAGAAATAAAAGCAAGTACTGACAA  300

seq1  AAGAGATGTGTTGCTTAGTACACACATAAATGAAAGCATGCAGGATTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATGTGTTGCTTAGTACACACATAAATGAAAGCATGCAGGATTTGT  350

seq1  TTTTGTTTTGAAAAGAATTCCAGTGTTGAGGTTCAACAGTATAAGGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGAAAAGAATTCCAGTGTTGAGGTTCAACAGTATAAGGGGAG  400

seq1  ACCTAAATGAAAATATCTGGGTTTTTAATTGTGGATAAATACATTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAATGAAAATATCTGGGTTTTTAATTGTGGATAAATACATTTCAAA  450

seq1  ATAAGTTTGTATGTTTTAGTTTAAGAAAATAAAAAGAAGGTAAGAAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTGTATGTTTTAGTTTAAGAAAATAAAAAGAAGGTAAGAAGAGG  500

seq1  TAACAAATGTGTCCCACTGCTGAAAGTGTGCAATGTGTGAAAGGAAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATGTGTCCCACTGCTGAAAGTGTGCAATGTGTGAAAGGAAGCCA  550

seq1  ATCTAACTGCAAAAGTCTGTGCTCTGTGGACACCAGAGCCTCTCTGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACTGCAAAAGTCTGTGCTCTGTGGACACCAGAGCCTCTCTGTGTC  600

seq1  TGTGTGCGTTCATGTGTAAACAATCACAGTGGGAGTTATCCGTTAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCGTTCATGTGTAAACAATCACAGTGGGAGTTATCCGTTAGAAAG  650

seq1  ATACCTCCATAGCCT-GGGCTAAGCGCTCTTCTAGTGCCATGTAGGTAAG  699
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATACCTCCATAGCCTGGGGCTAAGCGCTCTTCTAGTGCCATGTAGGTAAG  700

seq1  GAACTGAGGATCCACATAAGAAATAGCTTCAGCAACTCCAAGTCCGTCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAGGATCCACATAAGAAATAGCTTCAGCAACTCCAAGTCCGTCTG  750

seq1  CAAAACCATCAAACAGGCTGAAAAAAAAAAAAAAAAAAAAAAACCAAAAG  799
      ||||||||||||||||||||    |||||||||||||||||| |||||||
seq2  CAAAACCATCAAACAGGCTG----AAAAAAAAAAAAAAAAAACCCAAAAG  796

seq1  ACCCATAAGTATCATTTCGGAAATCTTACAGTGAAGATAATTTTGTACTA  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACCCATAAGTATCATTTCGG-AATCTTACAGTGAAGATAATTTTGTACTA  845

seq1  CCATATTGGTAGGCTGTACAAATTTTGCAAGCAGAAAACTTTTGAAATAT  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCATATTGGTAGGCTGTACAAATTTTGCAAGCAG-AAACTTTTGAAATAT  894

seq1  TTGCATGTGAATTCTATGGACCAAAGAACATGAAGAACAACAGAAAAGCT  949
      ||||||||| |||||||||||| |||||||||||||   |||| ||||||
seq2  TTGCATGTG-ATTCTATGGACC-AAGAACATGAAGA--CACAG-AAAGCT  939

seq1  AAGTATTAAATATAAAGAGTTAATATAGCCTATTGGCTGACCAGTCT-GT  998
       |||| ||||||| ||||| | |||||| ||| ||||||| |||||| ||
seq2  -AGTA-TAAATAT-AAGAGGT-ATATAG-CTA-TGGCTGA-CAGTCTGGT  982

seq1  GATCTCAGTGCATACAGTGTGCGATCCTCCCTGTCTGCTACTGACTCAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAGTGCATACAGTGTGCGATCCTCCCTGTCTGCTACTGACTCAGA  1032

seq1  AGCCTGCTTTACAGCAGTATTTTTACTCATTCAATCCTGTCCCTGTATTT  1098
      ||||||| ||||||||| |  |||||||| || |||||||||||    ||
seq2  AGCCTGC-TTACAGCAGGA--TTTACTCAATC-ATCCTGTCCCT---ATT  1075

seq1  TCCTCTCTGTTAATTTTAGTTTTCAATCTGGGTGAAGATGAAAATATGAG  1148
      |||| |||||  | |||||  |||| || ||| |||| |||||   ||||
seq2  TCCT-TCTGT--AATTTAG--TTCACTCGGGGGGAAG-TGAAA--TTGAG  1117

seq1  AACAAAAATTATTGTATTTGA--ATTCTATCACTAAATAAGAGCTCTCCC  1196
      |||||     |||| | | ||  |||||       ||| ||||||||  |
seq2  AACAA-----ATTGGA-TGGATCATTCT-------AAT-AGAGCTCT--C  1151

seq1  CAAGCCC  1203
      |||||||
seq2  CAAGCCC  1158