BAC Information

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BAC

Clone NameB6Ng01-110H05
Chromosome17 (Build37)
Map Location 13,234,014 - 13,391,819
singlet/doubletdoublet
Overlap geneGpr31c, Tcp10c, Ttll2, Unc93a
Upstream genePark2, Agpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2
Downstream geneSmok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110H05.bB6Ng01-110H05.g
ACCDH917069DH917070
length3671,115
definitionDH917069|Mus musculus domesticus DNA, BAC clone: B6Ng01-110H05, 5' end.DH917070|Mus musculus domesticus DNA, BAC clone: B6Ng01-110H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,234,014 - 13,234,381)(13,390,682 - 13,391,819)
sequence
ctagggagtttatgtcaataagcagtacctgtatgccctctgcttaccgt
cctgcaccgtgtcctgcatgtaccacacaaacacagatgtatgcttggct
gtcatacaagcccatgtgccaggcttcccaccatggtgaattttccagcc
ctgttggagctctgagcaggcaggaacaccagagctccctaaagagattt
cagcatgacagcaaagtcactaaaaacagcttcttcccctcagatacatg
gaagacatggaaagatcctctgtcctcccactccagtcttcacctcaacc
cctctttgtcccccaacctgacatacatgctggttctagggatttggtgt
tgaagcggggggggggg
gaattctcagcacacccctcccacactgggcctttcctgggcttcccatt
ctgttctgacatttttttccaaggaccagaagtggaagactcttctggcc
attggagtcactaattgagctggccagccacttggccagcaggcctgtct
cccagtgggtgttaaacagggcctaatattggatgaaagctctgattagc
caccacggttgagctagaactgaagcctccctgaggtgcaatgtagtggc
tttccaaacacccaggcccaaaaagaggggagaccatgacctgcccacag
gcctgctgtgtagagggtttggagtatagtttagggacttttctattagt
aagatcaggtcatctgaaaacaactttctcttttcctatttggatacacc
ttctctctctctctctctctctctctctccctctccctctctctttccct
ctttctttctttctttctttctttcttttttaaacaccctgaacatccta
gaaccttttgatcaggactctgtctacaagcatggggtttctctgaaagt
agaaacaggttctgggttaagcttgagcgtctcacactgcacatgggaaa
ttacagcaggaaaagtcacgaaacttgctcaaggagagaggtagttctgg
aaccaaaatctccatctaaatccatactgctacttccagcctaaaaatgg
ctgacttcatactaccaagcactcttattttaatcccaaatgcttcctgt
tttgctccttctcagtaataggcaagcactaactttttaaaaataagtta
ttttttatttcatgtgtatttggtgcctttcctgctttcatgtctgcatg
tatgtctgtgtgggggtgtctggaactagagttatagacagttgtgagct
gccatgtgagtgctgggaactgaacctggatcctctggaagagaagccag
tgctcttactgttgagccacctctccagccccagacacctacttttctaa
aggatcagatggcaccagcatttcctagaagatgttgctctgctgtttca
tggaaaatggtcatttgacaagccactatgagatgaatcgcccacagtgg
cttcaggccctccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_13234014_13234381
seq2: B6Ng01-110H05.b_51_417

seq1  CTAGGGAGTTTATGTCAATAGGCAGTACCTGTATGTCCTCTGCTTACCGT  50
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  CTAGGGAGTTTATGTCAATAAGCAGTACCTGTATGCCCTCTGCTTACCGT  50

seq1  CCTGCACCGTGTCCGGCATGTACCACACAAACACAGATGTATGCTTGGCT  100
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTGCACCGTGTCCTGCATGTACCACACAAACACAGATGTATGCTTGGCT  100

seq1  GTCATACAAGCCCATGTGCCAGGCTTCCCACCATGGCGGATTTTTCCAGC  150
      ||||||||||||||||||||||||||||||||||||  || |||||||||
seq2  GTCATACAAGCCCATGTGCCAGGCTTCCCACCATGG-TGAATTTTCCAGC  149

seq1  CCTGTTGGAGCTCTGAGCAGGCAGGAACACCAGAGCTCCCTAAAGAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGGAGCTCTGAGCAGGCAGGAACACCAGAGCTCCCTAAAGAGATT  199

seq1  TCAGCATGACAGCAAAGTCACTAAAAACAGCTTCTTCCCCTCAGATACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGACAGCAAAGTCACTAAAAACAGCTTCTTCCCCTCAGATACAT  249

seq1  GGAAGACATGGAAAGATCCTCTGTCCTCCCACTCCAGTCTTCACCTCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACATGGAAAGATCCTCTGTCCTCCCACTCCAGTCTTCACCTCAAC  299

seq1  CCCTCTTTGTCCCCCAACCTGACATACATGCTGGTTCTAGGGATTTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTGTCCCCCAACCTGACATACATGCTGGTTCTAGGGATTTGGTG  349

seq1  TTGAAGCGGGGGGGGGGG  368
      ||||||||||||||||||
seq2  TTGAAGCGGGGGGGGGGG  367

seq1: chr17_13390682_13391819
seq2: B6Ng01-110H05.g_65_1179 (reverse)

seq1  ATGGAGGGCCTG-AGCCACTGT-GGCGA-TCATCTCCTTAGTGGCTTGTT  47
      |||||||||||| ||||||||| ||||| |||||| | ||||||||||| 
seq2  ATGGAGGGCCTGAAGCCACTGTGGGCGATTCATCT-CATAGTGGCTTGTC  49

seq1  CAATG-CCATTTTCCATGAAAACCAGCAGAGGCAACATCTTCTTAGGAAA  96
       |||| |||||||||||||||  ||||||| ||||||||||| |||||||
seq2  AAATGACCATTTTCCATGAAA--CAGCAGA-GCAACATCTTC-TAGGAAA  95

seq1  TGCTGGTGCCATCTGATCCTTTAAGAAAGTTAGTGTCTGGGGCTGGAGAG  146
      |||||||||||||||||||||||  |||||  ||||||||||||||||||
seq2  TGCTGGTGCCATCTGATCCTTTAGAAAAGTAGGTGTCTGGGGCTGGAGAG  145

seq1  GTGGCTCAACAGTTAAGAGCACTGGCTTCTCTTCCAGAGGATCCAGGTTC  196
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCAACAG-TAAGAGCACTGGCTTCTCTTCCAGAGGATCCAGGTTC  194

seq1  AGTTCCCAGCACTCACATGGCAGCTCACAACTGTCTATAACTCTAGTTCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCAGCACTCACATGGCAGCTCACAACTGTCTATAACTCTAGTTCC  244

seq1  AGACACCCTCACACAGACATACATGCAGACATGAATGCAGGAAAGGCACC  296
      |||||||| |||||||||||||||||||||||||| ||||||||||||||
seq2  AGACACCCCCACACAGACATACATGCAGACATGAAAGCAGGAAAGGCACC  294

seq1  -AATACACATGAAATAAAAAATAACTTATTTTTAAAAAGTTAGTGCTTGC  345
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACACATGAAATAAAAAATAACTTATTTTTAAAAAGTTAGTGCTTGC  344

seq1  CTATTACTGAGAAGGAGCAAAACAGGAAGCATTTGGGATTAAAATAAGAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACTGAGAAGGAGCAAAACAGGAAGCATTTGGGATTAAAATAAGAG  394

seq1  TGCTTGGTAGTATGAAGTCAGCCATTTTTAGGCTGGAAGTAGCAGTATGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGTAGTATGAAGTCAGCCATTTTTAGGCTGGAAGTAGCAGTATGG  444

seq1  ATTTAGATGGAGATTTTGGTTCCAGAACTACCTCTCTCCTTGAGCAAGTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGATGGAGATTTTGGTTCCAGAACTACCTCTCTCCTTGAGCAAGTT  494

seq1  TCGTGACTTTTCCTGCTGTAATTTCCCATGTGCAGTGTGAGACGCTCAAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGACTTTTCCTGCTGTAATTTCCCATGTGCAGTGTGAGACGCTCAAG  544

seq1  CTTAACCCAGAACCTGTTTCTACTTTCAGAGAAACCCCATGCTTGTAGAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCCAGAACCTGTTTCTACTTTCAGAGAAACCCCATGCTTGTAGAC  594

seq1  AGAGTCCTGATCAAAAGGTTCTAGGATGTTCAGGGTGTTTAAAAAAGAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCTGATCAAAAGGTTCTAGGATGTTCAGGGTGTTTAAAAAAGAAA  644

seq1  GAAAGAAAGAAAGAAAGAAAGAGGGAAAGAGAGAGGGAGAGGGAGAGAGA  695
      ||||||||||||||||||||||||||||||||||||||||||        
seq2  GAAAGAAAGAAAGAAAGAAAGAGGGAAAGAGAGAGGGAGAGG--------  686

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGTGTAT  745
                    ||||||||||||||||||||||||||||||||||||
seq2  --------------GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGTGTAT  722

seq1  CCAAATAGGAAAAGAGAAAGTTGTTTTCAGATGACCTGATCTTACTAATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAGGAAAAGAGAAAGTTGTTTTCAGATGACCTGATCTTACTAATA  772

seq1  GAAAAGTCCCTAAACTATACTCCAAACCCTCTACACAGCAGGCCTGTGGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCCCTAAACTATACTCCAAACCCTCTACACAGCAGGCCTGTGGG  822

seq1  CAGGTCATGGTCTCCCCTCTTTTTGGGCCTGGGTGTTTGGAAAGCCACTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCATGGTCTCCCCTCTTTTTGGGCCTGGGTGTTTGGAAAGCCACTA  872

seq1  CATTGCACCTCAGGGAGGCTTCAGTTCTAGCTCAACCGTGGTGGCTAATC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCACCTCAGGGAGGCTTCAGTTCTAGCTCAACCGTGGTGGCTAATC  922

seq1  AGAGCTTTCATCCAATATTAGGCCCTGTTTAACACCCACTGGGAGACAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTTCATCCAATATTAGGCCCTGTTTAACACCCACTGGGAGACAGG  972

seq1  CCTGCTGGCCAAGTGGCTGGCCAGCTCAATTAGTGACTCCAATGGCCAGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGCCAAGTGGCTGGCCAGCTCAATTAGTGACTCCAATGGCCAGA  1022

seq1  AGAGTCTTCCACTTCTGGTCCTTGGAAAAAAATGTCAGAACAGAATGGGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTTCCACTTCTGGTCCTTGGAAAAAAATGTCAGAACAGAATGGGA  1072

seq1  AGCCCAGGAAAGGCCCAGTGTGGGAGGGGTGTGCTGAGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGAAAGGCCCAGTGTGGGAGGGGTGTGCTGAGAATTC  1115