BAC Information

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BAC

Clone NameB6Ng01-110H20
Chromosome17 (Build37)19 (Build37)
Map Location 29,963,956 - 29,964,1653,851,425 - 3,852,357
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBrpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik
Downstream geneMdga1, LOC100042885, LOC100042888, Zfand3, Btbd9, EG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110H20.bB6Ng01-110H20.g
ACCDH917099DH917100
length286927
definitionDH917099|Mus musculus domesticus DNA, BAC clone: B6Ng01-110H20, 5' end.DH917100|Mus musculus domesticus DNA, BAC clone: B6Ng01-110H20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,963,956 - 29,964,165)(3,851,425 - 3,852,357)
sequence
caggacagtcagggctacacagagaaaccctgacatgaaaaaccaaaaaa
taaaaataaaaacaacaacaacaacaaaaagagttaaaaacaagccggac
agtggtggcgcatgcctttaatcctggcactcgggaggcaaaggcaggcg
cattgctgagtttgaggccaacctggtctacaaagtgagttccaggacag
ccagaactatacagagaaaccttgtctcgaaaaaccaaagagagagagag
agagagagagagagagagagagagagagagtgtgtg
gaattccttacaccacaggtaggccctgcgcctggtccggggctcgggtt
gttcgtccgctagcggcggtgatggcggcgggggcagcggcaggggcggc
ggcggcggcggcggcagcgcgagaggttgggttcggccaccaagctgctt
ggactccagctcgcctgcggcgtcccgctgctgccctacgccgggcgtcg
gggcagcgttgccaccgcagctcagcagcagcccgagaggcgacggctcg
gcctcgcccccggtgcagaacttggttttcatgctggacaagcggccgag
aaggcgcgggcggccacagcacgagagggccacactcagggtccggctgg
atgcccgcctctgggggccggcgcggggaatggctcgccggcttcactga
ccggccgggcggcggttgtgggagcgcgcggggaggcgacgtcggcgacg
gcggggagaggcagcaatggacgtcaggcagcagtaacgagagacgagcg
cgggaggctgacggcaggcgactgctatagggggccgcggcgctcgctcc
tttacagcgctgcacgcggagagcccagcgtcaccgcccgcccccgcgct
cgccgctgattggacgctttgggcgcatcacaaccgccgccaccctcgcc
acgccgctttcccattggctgcggcacagcccctcctaggctcaggcggt
gagtccacgatgagggaggggtcggcgcaccgggggcggggccttgtcta
ggggtcgcgagggtcctgtaaaggctatctcaattgcctgcactcacaaa
gtggcgcctttgcggactcgagcctcttagggcagagaggcgagcttctg
cagcttggcagaccctagagtgatgttgaaagggaactttcttagacgcc
cccagtctgaaagtgatgatttgaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_29963956_29964165
seq2: B6Ng01-110H20.b_141_334 (reverse)

seq1  CACACACTTAGCTAACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50
      ||||||            ||||||||||||||||||||||||||||||||
seq2  CACACA------------CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  38

seq1  CTCTTTCTCGGTTTTTCGGTTTTTCGAGACAGGGTTTCTCTGTGTAGTCC  100
      |||| ||||     || |||||||||||||| ||||||||||| |||| |
seq2  CTCTCTCTC-----TTTGGTTTTTCGAGACAAGGTTTCTCTGTATAGTTC  83

seq1  TGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGGA  150
      |||||||||||||||||||| ||||||||||| ||||||||||||||| |
seq2  TGGCTGTCCTGGAACTCACTTTGTAGACCAGGTTGGCCTCAAACTCAGCA  133

seq1  ATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCA-C  199
      ||  |||||||| |||||||| |||||  ||||||||||||||||||| |
seq2  ATGCGCCTGCCTTTGCCTCCCGAGTGCCAGGATTAAAGGCATGCGCCACC  183

seq1  ACTGCCCGGCT  210
      |||| ||||||
seq2  ACTGTCCGGCT  194

seq1: chr19_3851425_3852357
seq2: B6Ng01-110H20.g_64_990 (reverse)

seq1  CTTTCAAATCATCACTTTCAGACCTGGGGGCGTCTAAGGAAAGTTTCCCT  50
      |||||||||||||||||||||| |||||||||||||| ||||| ||||||
seq2  CTTTCAAATCATCACTTTCAGA-CTGGGGGCGTCTAA-GAAAG-TTCCCT  47

seq1  TTCAACATCCACTCTAGGGTCTGCCAAAGCTGCAGAAGCCTCGCCTCTCC  100
      |||||||| |||||||||||||||| |||||||||||| ||||||||| |
seq2  TTCAACAT-CACTCTAGGGTCTGCC-AAGCTGCAGAAG-CTCGCCTCT-C  93

seq1  TGCCCTAAGAGGCTCGAGTCCGCAAAGGCGCCACCTTGTGAGTGCAGGCA  150
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGCCCTAAGAGGCTCGAGTCCGCAAAGGCGCCACTTTGTGAGTGCAGGCA  143

seq1  ATTGAGATAGCCTTTACAGGACCCTCGCGACCCCTAGACAAGGCCCCGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGATAGCCTTTACAGGACCCTCGCGACCCCTAGACAAGGCCCCGCC  193

seq1  CCCGGTGCGCCGACCCCTCCCTCATCGTGGACTCACCGCCTGAGCCTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGTGCGCCGACCCCTCCCTCATCGTGGACTCACCGCCTGAGCCTAGG  243

seq1  AGGGGCTGTGCCGCAGCCAATGGGAAAGCGGCGTGGCGAGGGTGGCGGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGTGCCGCAGCCAATGGGAAAGCGGCGTGGCGAGGGTGGCGGCG  293

seq1  GTTGTGATGCG-CCAAAGCGTCCAATCAGCGGCGAGCGCGGGGGCGGGCG  349
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGATGCGCCCAAAGCGTCCAATCAGCGGCGAGCGCGGGGGCGGGCG  343

seq1  GTGACGCTGGGCTCTCCGCGTGCAGCGCTGTAAAGGAGCGAGCGCCGCGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGCTGGGCTCTCCGCGTGCAGCGCTGTAAAGGAGCGAGCGCCGCGG  393

seq1  CCCCCTATAGCAGTCGCCTGCCGTCAGCCTCCCGCGCTCGTCTCTCGTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTATAGCAGTCGCCTGCCGTCAGCCTCCCGCGCTCGTCTCTCGTTA  443

seq1  CTGCTGCCTGACGTCCATTGCTGCCTCTCCCCGCCGTCGCCGACGTCGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCTGACGTCCATTGCTGCCTCTCCCCGCCGTCGCCGACGTCGCC  493

seq1  TCCCCGCGCGCTCCCACAACCGCCGCCCGGCCGGTCAGTGAAGCCGGCGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGCGCGCTCCCACAACCGCCGCCCGGCCGGTCAGTGAAGCCGGCGA  543

seq1  GCCATTCCCCGCGCCGGCCCCCAGAGGCGGGCATCCAGCCGGACCCTGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCCCCGCGCCGGCCCCCAGAGGCGGGCATCCAGCCGGACCCTGAG  593

seq1  TGTGGCCCTCTCGTGCTGTGGCCGCCCGCGCCTTCTCGGCCGCTTGTCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCCTCTCGTGCTGTGGCCGCCCGCGCCTTCTCGGCCGCTTGTCCA  643

seq1  GCATGAAAACCAAGTTCTGCACCGGGGGCGAGGCCGAGCCGTCGCCTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAAACCAAGTTCTGCACCGGGGGCGAGGCCGAGCCGTCGCCTCTC  693

seq1  GGGCTGCTGCTGAGCTGCGGTGGCAACGCTGCCCCGACGCCCGGCGTAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCTGCTGAGCTGCGGTGGCAACGCTGCCCCGACGCCCGGCGTAGG  743

seq1  GCAGCAGCGGGACGCCGCAGGCGAGCTGGAGTCCAAGCAGCTTGGTGGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGCGGGACGCCGCAGGCGAGCTGGAGTCCAAGCAGCTTGGTGGCC  793

seq1  GAACCCAACCTCTCGCGCTGCCGCCGCCGCCGCCGCCGCCCCTGCCGCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAACCTCTCGCGCTGCCGCCGCCGCCGCCGCCGCCCCTGCCGCTG  843

seq1  CCCCCGCCGCCATCACCGCCGCTAGCGGACGAACAACCCGAGCCCCGGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGCCGCCATCACCGCCGCTAGCGGACGAACAACCCGAGCCCCGGAC  893

seq1  CAGGCGCAGGGCCTACCTGTGGTGTAAGGAATTC  933
      ||||||||||||||||||||||||||||||||||
seq2  CAGGCGCAGGGCCTACCTGTGGTGTAAGGAATTC  927