BAC Information

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BAC

Clone NameB6Ng01-110I09
Chromosome17 (Build37)
Map Location 22,883,071 - 22,884,187
singlet/doubletsinglet
Overlap geneEG433078
Upstream geneBC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218
Downstream geneLOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110I09.bB6Ng01-110I09.g
ACCDH917119DH917120
length1,1161,154
definitionDH917119|Mus musculus domesticus DNA, BAC clone: B6Ng01-110I09, 5' end.DH917120|Mus musculus domesticus DNA, BAC clone: B6Ng01-110I09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctgacatatggagattcgccgcagatacttaaaagaacagcc
aagttacactcatacaagaatttatcaaggcctaggaaatagggggtttg
tggtattgcattattcatgagaaggtctgctagagcagaaccccctggtg
ctagctttcacaaggctcacaggagtagcacaaattgtgactagggtgtg
aaatccttacctgtcattagctgaccctaagcagagctgttttatcttta
ctgtaaatattacctggttcctgtaagtccttttgaagtcattcctttgt
tttgtgtcaggtaacttcaatgtactttgcctgctgtgacatcttacctc
tttgttttctgtattatataagactggtgttcactttgtgacaatacatt
cagattctacacaatctcctgtgttgcccctgtctgtcattcattcatta
caggtggactccttgtccacctgtaaccagagacccattctacgcagaca
agggaccaagagggtctgcggcagtttcacagagtgaaaatacacaaaag
actatgactagattaggaaacatctcttaatgaaattaaacttcaatttt
gttttatgtattttggtacattttcctgactcaatgcatatgtgctttgt
attcttctcacatgttgaaagaagagagcattaggtctcatagaattaga
tctcatattctgttttatatggccatgatggttctggccagaaaattaca
tattagaggactttaaaagacattataaaatccaaagtgcaaacaaaatg
ttcaaatgcattgatggaggcaaatctgttctctgtctgttgctcagttt
tagaaaatatcagcaagccctaaagagcagagatgtgaatatgtgcacta
tactatttcattctgtatgtttcctatagaagatgcctaacttctgacac
acactatggccttctagaaactttgtctttatatttgcatgagtcttcat
atcatatatctatctttgtgtctttcgtagtagaagacattttggccaca
tcacatgataatgtattttctattaaagtgtttgtacatcagatgtgctg
tggagttcatggaaga
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcatgtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccatcgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgcccaaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagtatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
ggaactcacacaatatgtactcactgataattggatattagcccaaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttcgaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagacga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccatttcatacactagcaagattttatctaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaca
cagaagtggatgctcacagtcagctaatggatggatcacaggctcccaat
gagagctagagaagtacccaaggagccaaaggatctgcaccctataggtg
gacacattatgactaacagtaccccgagcctctgactctagctgcatatg
tttcaaagatgcctagtcgccatcactgaaagagaggcccattgacaagc
cactttatattgccaagtaaggaacgccaaggcaactgggagtgggtggt
ggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_22883071_22884187
seq2: B6Ng01-110I09.b_73_1162

seq1  CCGCAGATACTTAAAAGAACAGCCAAGTTACACTCATACAAGAATTTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGATACTTAAAAGAACAGCCAAGTTACACTCATACAAGAATTTATC  50

seq1  AAGGCCTAGGAAATAGGGGGTTTGTGGTATTGCATTATTCATGAGAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTAGGAAATAGGGGGTTTGTGGTATTGCATTATTCATGAGAAGGT  100

seq1  CTGCTAGAGCAGAACCCCCTGGTGCTAGCTTTCACAAGGCTCACAGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGAGCAGAACCCCCTGGTGCTAGCTTTCACAAGGCTCACAGGAGT  150

seq1  AGCACAAATTGTGACTAGGGTGTGAAATCCTTACCTGTCATTAGCTGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAATTGTGACTAGGGTGTGAAATCCTTACCTGTCATTAGCTGACC  200

seq1  CTAAGCAGAGCTGTTTTATCTTTACTGTAAATATTACCTGGTTCCTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCAGAGCTGTTTTATCTTTACTGTAAATATTACCTGGTTCCTGTAA  250

seq1  GTCCTTTTGAAGTCATTCCTTTGTTTTGTGTCAGGTAACTTCAATGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTTGAAGTCATTCCTTTGTTTTGTGTCAGGTAACTTCAATGTACT  300

seq1  TTGCCTGCTGTGACATCTTACCTCTTTGTTTTCTGTATTATATAAGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGCTGTGACATCTTACCTCTTTGTTTTCTGTATTATATAAGACTG  350

seq1  GTGTTCACTTTGTGACAATACATTCAGATTCTACACAATCTCCTGTGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCACTTTGTGACAATACATTCAGATTCTACACAATCTCCTGTGTTG  400

seq1  CCCCTGTCTGTCATTCATTCATTACAGGTGGACTCCTTGTCCACCTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTCTGTCATTCATTCATTACAGGTGGACTCCTTGTCCACCTGTAA  450

seq1  CCAGAGACCCATTCTACGCAGACAAGGGACCAAGAGGGTCTGCGGCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACCCATTCTACGCAGACAAGGGACCAAGAGGGTCTGCGGCAGTT  500

seq1  TCACAGAGTGAAAATACACAAAAGACTATGACTAGATTAGGAAACATCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGTGAAAATACACAAAAGACTATGACTAGATTAGGAAACATCTC  550

seq1  TTAATGAAATTAAACTTCAATTTTGTTTTATGTATTTTGGTACATTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAAATTAAACTTCAATTTTGTTTTATGTATTTTGGTACATTTTCC  600

seq1  TGACTCAATGCATATGTGCTTTGTATTCTTCTCACATGTTGAAAGAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAATGCATATGTGCTTTGTATTCTTCTCACATGTTGAAAGAAGAG  650

seq1  AGCATTAGGTCTCATAGAATTAGATCTCATATTCTGTTTTATATGGCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAGGTCTCATAGAATTAGATCTCATATTCTGTTTTATATGGCCAT  700

seq1  GATGGTTCTGGCCAGAAAATTACATATTAGAGGACTTTAAAAGACATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTCTGGCCAGAAAATTACATATTAGAGGACTTTAAAAGACATTAT  750

seq1  AAAATCCAAAGTGCAAACAAAATGTTCAAATGCATTGATGGAGGCAAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCAAAGTGCAAACAAAATGTTCAAATGCATTGATGGAGGCAAATC  800

seq1  TGTTCTCTGTCTGTTGCTCAGTTTTAGAAAATATCAGCAAGCCCTAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTGTCTGTTGCTCAGTTTTAGAAAATATCAGCAAGCCCTAAAGA  850

seq1  GCAGAGATGTGAATATGTGCACTATACTATTTCATTCTGTATGTTTCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGATGTGAATATGTGCACTATACTATTTCATTCTGTATGTTTCCTA  900

seq1  TAGAAGATGCCTAACTTCTGACACAACACTATGGCCCTTCTAGAAAACTT  950
      |||||||||||||||||||||||| ||||||||| |||||||||||   |
seq2  TAGAAGATGCCTAACTTCTGACAC-ACACTATGG-CCTTCTAGAAA--CT  946

seq1  TTGTCCTTTAATATTTGCCATGAGTCTTCCATATCATATATCTTATTCTT  1000
      |||||  || ||||||| |||||||||| ||||||||||||||   ||||
seq2  TTGTC--TTTATATTTG-CATGAGTCTT-CATATCATATATCT--ATCTT  990

seq1  TGTGTCTTTCGTAAGTAGGAAGACATTTTTGCCCAACATCACATGATAAA  1050
      |||||||||||| |||| ||||||||||| |||  |||||||||||||| 
seq2  TGTGTCTTTCGT-AGTA-GAAGACATTTTGGCC--ACATCACATGATAAT  1036

seq1  TTGGTAATTTTCTATTACAGTGTTTGTTAACATTCAGGGATGTGGCTGTG  1100
       |    ||||||||||| |||||||||  ||| |||  ||||| ||||||
seq2  GT----ATTTTCTATTAAAGTGTTTGT--ACA-TCA--GATGT-GCTGTG  1076

seq1  GAGTTCTCAGTGGAAGA  1117
      ||||||    |||||||
seq2  GAGTTC---ATGGAAGA  1090