BAC Information

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BAC

Clone NameB6Ng01-110M14
Chromosome17 (Build37)
Map Location 42,268,360 - 42,391,341
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC627577
Downstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110M14.bB6Ng01-110M14.g
ACCDH917312DH917313
length1,1341,060
definitionDH917312|Mus musculus domesticus DNA, BAC clone: B6Ng01-110M14, 5' end.DH917313|Mus musculus domesticus DNA, BAC clone: B6Ng01-110M14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,268,360 - 42,269,509)(42,390,262 - 42,391,341)
sequence
gaattctttgtttaactctgagaaatataaccacaacaaatactggtgag
ctctagttcactgtcagactgcaaactggtgcagccactatagaaattgg
tgtggagaattccaaaaagctgcaagaagttttaagattaaagtgcctct
ctagctctgattcactctggctccattaagtaaagcttgcagcagcacag
cacttagatacagtcagtcctcatcaactgtggattctgtctgttcacct
gcaccaccttaacggttatttactgctctgaaatcagcacttacagtgat
ttcaaaaatatttgccgacatgtgtaaagcaacggaaaatttgagccacc
cagtagattatgtttccagctgaaatagaaaaaggtgatattctgccttc
agctctcaggctttgtagtctattaaattctgtgttttccaatgtcttct
tttaattttgtcctccccccttctttcctttctcacttcctttcatcttt
tgtccttttctgtctgtaagtctttctatctatgattttgctatttaaat
tgaagccaagtataatgttgcctattgtctgatatttttaagcacaggca
gttatgtcatgccttacagttaaatgcacaataagctttatctacgtact
attggcattactgttatctctgacctcaatattaataggtcaaatgtata
ttaaataaaatgtactaaaatgaaaaatcataaggctgttaattattgaa
aaattgtaaacagagacttaaaggtaactactaccaaatttctcctagtt
gcaatgttacactgagtcttggtttggtatttgtagaaagttcacataaa
atagcagctggccatattgaaagttgactgtattttaaatgtgatttccc
tgtctttattttttaccaagcatataaatatcaagacattcaaagttctt
gccaaaaagatacatgtatttcagaaaaccatgttttcttgtatctgaga
ctagacactgattgtaacagctactaaaatctacagtacatagtacattg
tacaaactgttactgaatattctgtgaaatcccataactattatggaaat
ttgaaaggtattttctggataaaaaacactgcaa
gaattcaatatgtttaagtacatcagcttgttttatgcactgcacttaaa
ctggtcatgcaatactaagacagagggttccagaagttggtgttttggac
tatttattattattattattattattattattattattattattaatctt
tcttcacagtctagttgctattaccctccctttgtgccctccaatagccc
cccatctcattcctccttccctgtctccaagaggatgttcttacacccca
acacatccctatacccctccaggccttcccctccctggagccccaagtct
ctcaaggtctaggtgcatcttctctcactgaggtcagaccagcaatcctc
tgcagtatatatgtgaaaataatatgcttcacattagaagaaatggaaag
tgcttatcagagtacaaatcttttgcttgtgaaatgctaacttctttatg
aagtgggggattatatctataaaaaaagctcattttgtgttatttttaca
aaaaatattattaaactcttttaaatgtaggggatgtgaactatgacaat
aaaatatagtgtttttaatttcctacaatgtagacttggatcctgcactg
gatgaaggccagttcttttttttcagttgagaataaacttgacttttaag
ctttgtagagccaagacttacatcatgaacacagaggctacttatcacca
aaatgaatatgaacatggttgaaaagagaaaaaaatgttctagtactttc
tagcctgaaaaagaaatgggataaacaacaagtttaaaatgagttactta
ttacttggcatgccagtaacaaaaaccagctcctacattttaggagtcta
ttctttaccaaaatgatagattcatgaatatgaaagtatggcacatgtat
ttgagtggtaaggacagtatcatatgatgctttcatctgagcctttatct
ttttatgatgacaatgcagggtacactccctactacgagtgggctagata
gtgccctttcgatactagtgccaggtatgtatgtgagtctgtttggatgc
ctgttctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42268360_42269509
seq2: B6Ng01-110M14.b_48_1181

seq1  GAATTCTTTGTTTAACTCTGAGAAATATAACCACAACAAATACTGGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAACTCTGAGAAATATAACCACAACAAATACTGGTGAG  50

seq1  CTCTAGTTCACTGTCAGACTGCAAACTGGTGCAGCCACTATAGAAATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTTCACTGTCAGACTGCAAACTGGTGCAGCCACTATAGAAATTGG  100

seq1  TGTGGAGAATTCCAAAAAGCTGCAAGAAGTTTTAAGATTAAAGTGCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGAATTCCAAAAAGCTGCAAGAAGTTTTAAGATTAAAGTGCCTCT  150

seq1  CTAGCTCTGATTCACTCTGGCTCCATTAAGTAAAGCTTGCAGCAGCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCTGATTCACTCTGGCTCCATTAAGTAAAGCTTGCAGCAGCACAG  200

seq1  CACTTAGATACAGTCAGTCCTCATCAACTGTGGATTCTGTCTGTTCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGATACAGTCAGTCCTCATCAACTGTGGATTCTGTCTGTTCACCT  250

seq1  GCACCACCTTAACGGTTATTTACTGCTCTGAAATCAGCACTTACAGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACCTTAACGGTTATTTACTGCTCTGAAATCAGCACTTACAGTGAT  300

seq1  TTCAAAAATATTTGCCGACATGTGTAAAGCAACGGAAAATTTGAGCCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAATATTTGCCGACATGTGTAAAGCAACGGAAAATTTGAGCCACC  350

seq1  CAGTAGATTATGTTTCCAGCTGAAATAGAAAAAGGTGATATTCTGCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGATTATGTTTCCAGCTGAAATAGAAAAAGGTGATATTCTGCCTTC  400

seq1  AGCTCTCAGGCTTTGTAGTCTATTAAATTCTGTGTTTTCCAATGTCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCAGGCTTTGTAGTCTATTAAATTCTGTGTTTTCCAATGTCTTCT  450

seq1  TTTAATTTTGTCCTCCCCCCTTCTTTCCTTTCTCACTTCCTTTCATCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTGTCCTCCCCCCTTCTTTCCTTTCTCACTTCCTTTCATCTTT  500

seq1  TGTCCTTTTCTGTCTGTAAGTCTTTCTATCTATGATTTTGCTATTTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTTCTGTCTGTAAGTCTTTCTATCTATGATTTTGCTATTTAAAT  550

seq1  TGAAGCCAAGTATAATGTTGCCTATTGTCTGATATTTTTAAGCACAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCCAAGTATAATGTTGCCTATTGTCTGATATTTTTAAGCACAGGCA  600

seq1  GTTATGTCATGCCTTACAGTTAAATGCACAATAAGCTTTATCTACGTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTCATGCCTTACAGTTAAATGCACAATAAGCTTTATCTACGTACT  650

seq1  ATTGGCATTACTGTTATCTCTGACCTCAATATTAATAGGTCAAATGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCATTACTGTTATCTCTGACCTCAATATTAATAGGTCAAATGTATA  700

seq1  TTAAATAAAATGTACTAAAATGAAAAATCATAAGGCTGTTAATTATTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAAATGTACTAAAATGAAAAATCATAAGGCTGTTAATTATTGAA  750

seq1  AAATTGTAAACAGAGACTTAAAGGTAACTACTACCAAATTTCTCCTAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTAAACAGAGACTTAAAGGTAACTACTACCAAATTTCTCCTAGTT  800

seq1  GCAATGTTACACTGAGTCTTGGTTTGGTATTTGTAGAAAGTTCACATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTTACACTGAGTCTTGGTTTGGTATTTGTAGAAAGTTCACATAAA  850

seq1  ATAGCAGCTGGCCATATTGAAAGTTGACTGTATTTTAAATGTGATTTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGCTGGCCATATTGAAAGTTGACTGTATTTTAAATGTGATTTCCC  900

seq1  TGTCTTTATTTTTTACCAAGCATATAAATATCAAGACATTCAAAAGTTCT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTCTTTATTTTTTACCAAGCATATAAATATCAAGACATTC-AAAGTTCT  949

seq1  TGCCAAAAAGATACAATGTATTTCAGGAAAACCATGTTTTC-TGTATCTT  999
      |||||||||||||| |||||||||| ||||||||||||||| |||||| |
seq2  TGCCAAAAAGATAC-ATGTATTTCA-GAAAACCATGTTTTCTTGTATC-T  996

seq1  GAGACTAAGGACACTGAATTGTAACAGCTACTAAAAATCTACAGTACATA  1049
      |||||||  ||||||| ||||||||||||||| |||||||||||||||||
seq2  GAGACTA--GACACTG-ATTGTAACAGCTACT-AAAATCTACAGTACATA  1042

seq1  GTACATTGTACAAACTGTTACTGAATATTCCTGTGAATATCCCCATAAAC  1099
      ||||||||||||||||||||||||||||| ||||||| || |||||||  
seq2  GTACATTGTACAAACTGTTACTGAATATT-CTGTGAA-AT-CCCATAA--  1087

seq1  ATATATTGGAAATTTTTGGATAGTATTTTCTGAGTAAAAAAACAACTGCA  1149
       |||  ||||||  |||| |  ||||||||||  |||||||   ||||||
seq2  CTATTATGGAAA--TTTGAAAGGTATTTTCTGGATAAAAAA--CACTGCA  1133

seq1  A  1150
      |
seq2  A  1134

seq1: chr17_42390262_42391341
seq2: B6Ng01-110M14.g_66_1125 (reverse)

seq1  AATAGAACAGGCATACAAAACAGGGACTCACATACATACCTGGCACTTAG  50
      |||||||||||||| | |||||  |||||||||||||||||||||| |||
seq2  AATAGAACAGGCAT-CCAAACA--GACTCACATACATACCTGGCAC-TAG  46

seq1  TAATCGGAAAGGGCACCCTTATCTTAGCCCAACTTCGTAGTTAGGGAGGT  100
      | ||| ||||||||||   |||| |||||||   |||||| |||||| ||
seq2  T-ATC-GAAAGGGCAC---TATC-TAGCCCA--CTCGTAG-TAGGGA-GT  86

seq1  GTAACCCCTGCATTGTCATCATAAAAAGGATAAAAGGCTCAGATGAAAGC  150
      |||  |||||||||||||||||||||| ||| ||||||||||||||||||
seq2  GTA--CCCTGCATTGTCATCATAAAAA-GAT-AAAGGCTCAGATGAAAGC  132

seq1  ATCATATGATACTGTCCTTACCACTCAAATACATGTGCCATACTTTCATT  200
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATCATATGATACTGTCCTTACCACTCAAATACATGTGCCATACTTTCA-T  181

seq1  ATTCATGAATCTATCATTTTGGTAAAGAATAGACTCCTAAAATGTAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGAATCTATCATTTTGGTAAAGAATAGACTCCTAAAATGTAGGAG  231

seq1  CTGGTTTTTGTTACTGGCATGCCAAGTAATAAGTAACTCATTTTAAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTTGTTACTGGCATGCCAAGTAATAAGTAACTCATTTTAAACTT  281

seq1  GTTGTTTTATCCCATTTCTTTTTCAGGCTAGAAAGTACTAGAACATTTTT  350
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTG-TTTATCCCATTTCTTTTTCAGGCTAGAAAGTACTAGAACATTTTT  330

seq1  TTCTCTTTTCAACCATGTTCATATTCATTTTGGTGATAAGTAGCCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTTCAACCATGTTCATATTCATTTTGGTGATAAGTAGCCTCTGT  380

seq1  GTTCATGATGTAAGTCTTGGCTCTACAAAGCTTAAAAGTCAAGTTTATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGATGTAAGTCTTGGCTCTACAAAGCTTAAAAGTCAAGTTTATTC  430

seq1  TCAACTGAAAAAAAAGAACTGGCCTTCATCCAGTGCAGGATCCAAGTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGAAAAAAAAGAACTGGCCTTCATCCAGTGCAGGATCCAAGTCTA  480

seq1  CATTGTAGGAAATTAAAAACACTATATTTTATTGTCATAGTTCACATCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTAGGAAATTAAAAACACTATATTTTATTGTCATAGTTCACATCCC  530

seq1  CTACATTTAAAAGAGTTTAATAATATTTTTTGTAAAAATAACACAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTAAAAGAGTTTAATAATATTTTTTGTAAAAATAACACAAAATG  580

seq1  AGCTTTTTTTATAGATATAATCCCCCACTTCATAAAGAAGTTAGCATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTTTATAGATATAATCCCCCACTTCATAAAGAAGTTAGCATTTC  630

seq1  ACAAGCAAAAGATTTGTACTCTGATAAGCACTTTCCATTTCTTCTAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAAAAGATTTGTACTCTGATAAGCACTTTCCATTTCTTCTAATGT  680

seq1  GAAGCATATTATTTTCACATATATACTGCAGAGGATTGCTGGTCTGACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATATTATTTTCACATATATACTGCAGAGGATTGCTGGTCTGACCT  730

seq1  CAGTGAGAGAAGATGCACCTAGACCTTGAGAGACTTGGGGCTCCAGGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGAGAAGATGCACCTAGACCTTGAGAGACTTGGGGCTCCAGGGAG  780

seq1  GGGAAGGCCTGGAGGGGTATAGGGATGTGTTGGGGTGTAAGAACATCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGCCTGGAGGGGTATAGGGATGTGTTGGGGTGTAAGAACATCCTC  830

seq1  TTGGAGACAGGGAAGGAGGAATGAGATGGGGGGCTATTGGAGGGCACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGACAGGGAAGGAGGAATGAGATGGGGGGCTATTGGAGGGCACAAA  880

seq1  GGGAGGGTAATAGCAACTAGACTGTGAAGAAAGATTAATAATAATAATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGTAATAGCAACTAGACTGTGAAGAAAGATTAATAATAATAATAA  930

seq1  TAATAATAATAATAATAATAATAATAAATAGTCCAAAACACCAACTTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATAATAATAATAATAATAAATAGTCCAAAACACCAACTTCTG  980

seq1  GAACCCTCTGTCTTAGTATTGCATGACCAGTTTAAGTGCAGTGCATAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTCTGTCTTAGTATTGCATGACCAGTTTAAGTGCAGTGCATAAAA  1030

seq1  CAAGCTGATGTACTTAAACATATTGAATTC  1080
      ||||||||||||||||||||||||||||||
seq2  CAAGCTGATGTACTTAAACATATTGAATTC  1060