BAC Information

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BAC

Clone NameB6Ng01-110P19
Chromosome17 (Build37)X (Build37)
Map Location 81,958,127 - 81,959,29223,517,064 - 23,517,376
singlet/doubletsingletsinglet
Overlap geneSlc8a1
Upstream geneCdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704
Downstream geneEG668832, LOC100043707, LOC625467, LOC668836, EG433141, EG625514
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110P19.bB6Ng01-110P19.g
ACCDH917453DH917454
length1,151375
definitionDH917453|Mus musculus domesticus DNA, BAC clone: B6Ng01-110P19, 5' end.DH917454|Mus musculus domesticus DNA, BAC clone: B6Ng01-110P19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,958,127 - 81,959,292)(23,517,064 - 23,517,376)
sequence
gaattcattcataaaagatttgaggatcttctaaacatggaccacagggt
tgaaacttaatgagcttaaagtcattagcacggagcttctgacttctcac
tggacgctgaaaacagttggcagtcacacgacaagggtcagaagcgtatg
ggtttataaaacggaaatgctcaggaaaatcacagaatggcaaccccact
tgattttgaaacaactatcagataggcttcacatctaaggaaaggctact
tcaggatgctttaaaacctacaccattatttaagtttcttgctatacgca
caaatagcatcaaacattcattttccactaatattgaaggaatattaaat
ccttgtgctaaatatcacttaatgtgaactatttcatctagttgttaaga
atgaactgttttttatctcctcaaagaggccattatgttttatgcacagg
gacaaaaactaagtcataggacagtcttctagcctggtctcttcctttct
tcccttccaccctctttcccttcctctctctccccctccctccctctacc
cctccttccctctgttccttccacctcttttttcctcccttccttcttct
cacacccaccatttcatcttctctctttctctcaattagtagcataaaaa
cgaaatcagaattttatcagaaaccttcaactggtaatcacctataaaca
tggtacctgaaagtgggtgtcatagtgacagagatgtttgttgtcaaagc
atggcattcctagactgttttcatgaggtggtgctgactctgcctggccc
ctgcagtcagtacaggacacagtatctatacatgtggtggtaagatgcaa
cccttcctcttctctttcccacactcgatctgtgtccagataacatgctc
atcacactacactctgatacccttgaggtctttagtcttggactcttctg
cacacgagtccaatgactctgcaaaaaaatcacctatgagataagctctt
tacttaaaggcctgttttcttcaagacaaacaaacagttaaaaataaaca
cccaacaacaaacaaccaacaccatctttgaatgtgaatcaatgtagtag
gttttgggttattcttagaaaaaattagcagctttcctctttacatctct
g
tttgttcagttctgagccccattttttaatggggttatttgattttctga
agtccacctttgctatgccggggcctagcaaacacagaagtggatgccca
cagtcagctaatggatggatcacagggctcccaatggaggagctagagaa
agtacccaaggagctaaagggatctgcaaccctataggtggatcaacatt
atgaactaaccagtaccccagagctcttgactctagctgcatatgtatca
aaagatggcctagttggccatcactggaaagagaggcccattggacacac
aaactttatatgccccagaacagggggacaccagggccaaaaagggggag
tgggcgggtaggggagtgggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_81958127_81959292
seq2: B6Ng01-110P19.b_47_1197

seq1  GAATTCATTCATAAAAGATTTGAGGATCTTCTAAACATGGACCACAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATAAAAGATTTGAGGATCTTCTAAACATGGACCACAGGGT  50

seq1  TGAAACTTAATGAGCTTAAAGTCATTAGCACGGAGCTTCTGACTTCTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTAATGAGCTTAAAGTCATTAGCACGGAGCTTCTGACTTCTCAC  100

seq1  TGGACGCTGAAAACAGTTGGCAGTCACACGACAAGGGTCAGAAGCGTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGCTGAAAACAGTTGGCAGTCACACGACAAGGGTCAGAAGCGTATG  150

seq1  GGTTTATAAAACGGAAATGCTCAGGAAAATCACAGAATGGCAACCCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATAAAACGGAAATGCTCAGGAAAATCACAGAATGGCAACCCCACT  200

seq1  TGATTTTGAAACAACTATCAGATAGGCTTCACATCTAAGGAAAGGCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGAAACAACTATCAGATAGGCTTCACATCTAAGGAAAGGCTACT  250

seq1  TCAGGATGCTTTAAAACCTACACCATTATTTAAGTTTCTTGCTATACGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGCTTTAAAACCTACACCATTATTTAAGTTTCTTGCTATACGCA  300

seq1  CAAATAGCATCAAACATTCATTTTCCACTAATATTGAAGGAATATTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGCATCAAACATTCATTTTCCACTAATATTGAAGGAATATTAAAT  350

seq1  CCTTGTGCTAAATATCACTTAATGTGAACTATTTCATCTAGTTGTTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGCTAAATATCACTTAATGTGAACTATTTCATCTAGTTGTTAAGA  400

seq1  ATGAACTGTTTTTTATCTCCTCAAAGAGGCCATTATGTTTTATGCACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGTTTTTTATCTCCTCAAAGAGGCCATTATGTTTTATGCACAGG  450

seq1  GACAAAAACTAAGTCATAGGACAGTCTTCTAGCCTGGTCTCTTCCTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAACTAAGTCATAGGACAGTCTTCTAGCCTGGTCTCTTCCTTTCT  500

seq1  TCCCTTCCACCCTCTTTCCCTTCCTCTCTCTCCCCCTCCCTCCCTCTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCACCCTCTTTCCCTTCCTCTCTCTCCCCCTCCCTCCCTCTACC  550

seq1  CCTCCTTCCCTCTGTTCCTTCCACCTCTTTTTTCCTCCCTTCCTTCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCCCTCTGTTCCTTCCACCTCTTTTTTCCTCCCTTCCTTCTTCT  600

seq1  CACACCCACCATTTCATCTTCTCTCTTTCTCTCAATTAGTAGCATAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCACCATTTCATCTTCTCTCTTTCTCTCAATTAGTAGCATAAAAA  650

seq1  CGAAATCAGAATTTTATCAGAAACCTTCAACTGGTAATCACCTATAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATCAGAATTTTATCAGAAACCTTCAACTGGTAATCACCTATAAACA  700

seq1  TGGTACCTGAAAGTGGGTGTCATAGTGACAGAGATGTTTGTTGTCAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCTGAAAGTGGGTGTCATAGTGACAGAGATGTTTGTTGTCAAAGC  750

seq1  ATGGCATTCCTAGACTGTTTTCATGAGGTGGTGCTGACTCTGCCTGGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATTCCTAGACTGTTTTCATGAGGTGGTGCTGACTCTGCCTGGCCC  800

seq1  CTGCAGTCAGTACAGGACACAGTATCTATACATGTGGTGGTAAGATGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTCAGTACAGGACACAGTATCTATACATGTGGTGGTAAGATGCAA  850

seq1  CCCTTCCTCTTCTCTTTCCCACACTCGATCTGTGTCCAGATAACATGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTCTTCTCTTTCCCACACTCGATCTGTGTCCAGATAACATGCTC  900

seq1  ATCACACTACACTCTGATACCCTTGAGGTCTTTAGTCTTGGACTCTTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACTACACTCTGATACCCTTGAGGTCTTTAGTCTTGGACTCTTCTG  950

seq1  CACACGAGTCCAATGACTCCTGCAAAAAAAATCACCTAATGAGATAAGCT  1000
      |||||||||||||||||| |||| ||||||||||||| ||||||||||||
seq2  CACACGAGTCCAATGACT-CTGC-AAAAAAATCACCT-ATGAGATAAGCT  997

seq1  CTTTACTTAAAGGCCTGTTTTCTTCAAAGACAAAACAAAACAAGTAAAAA  1050
      ||||||||||||||||||||||||| ||||| |||||||   ||| ||||
seq2  CTTTACTTAAAGGCCTGTTTTCTTC-AAGAC-AAACAAA--CAGTTAAAA  1043

seq1  ATAAAACACCAAACAAACAAACAAACAAACAAACAAATCTTGAAATGTGA  1100
      || ||||||| |||     ||||||||| |||    |||||  |||||||
seq2  AT-AAACACCCAAC-----AACAAACAACCAACACCATCTTTGAATGTGA  1087

seq1  ATCAATGTAGTAGGTATTTGGTTTATTCTTAGAAAAATATAGCAGCTTTC  1150
      ||||||||||||||| ||||| |||||||||||||||  |||||||||||
seq2  ATCAATGTAGTAGGT-TTTGGGTTATTCTTAGAAAAAATTAGCAGCTTTC  1136

seq1  CTCTTTAACATCTCTG  1166
      |||||| |||||||||
seq2  CTCTTT-ACATCTCTG  1151

seq1: chrX_23517064_23517376
seq2: B6Ng01-110P19.g_136_448 (reverse)

seq1  CCACCCCCACTCCCCTACCCACCCACTCCCACTTTTTGGCCCTGGCGTTC  50
      |||||||||||||||||||| ||||||||| |||||||||||||| || |
seq2  CCACCCCCACTCCCCTACCCGCCCACTCCCCCTTTTTGGCCCTGGTGTCC  50

seq1  CCCTGTACTGGGGCACATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCC  100
      |||||| |||||||| |||||||||| |||||||||||||||||||||||
seq2  CCCTGTTCTGGGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTCTTTCC  100

seq1  AGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAG  150
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGGCCAACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAG  150

seq1  AGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGC  200
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  AGCTCTGGGGTACTGGTTAGTTCATAATGTTGATCCACCTATAGGGTTGC  200

seq1  AGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGAGAGCC  250
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCC  250

seq1  CTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTA  300
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGTGATCCATCCATTAGCTGACTGTGGGCATCCACTTCTGTGTTTGCTA  300

seq1  GGCCCCGGCATAG  313
      |||||||||||||
seq2  GGCCCCGGCATAG  313