BAC Information

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BAC

Clone NameB6Ng01-111D21
Chromosome17 (Build37)
Map Location 45,122,796 - 45,307,016
singlet/doubletdoublet
Overlap geneSupt3h, EG210562
Upstream geneDscr1l1, Enpp5, Enpp4, Clic5, Runx2, 4930564C03Rik
Downstream geneEG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111D21.bB6Ng01-111D21.g
ACCDH917637DH917638
length9151,080
definitionDH917637|Mus musculus domesticus DNA, BAC clone: B6Ng01-111D21, 5' end.DH917638|Mus musculus domesticus DNA, BAC clone: B6Ng01-111D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,306,463 - 45,307,016)(45,122,796 - 45,123,888)
sequence
gaattcctcacatggtgtattagtcagggttctctagagtcacagaactt
atggacagtctctagatagtaaaggaatttattgatgacttacagtcggc
agcccaattcccaacaatgattcagtcgcagctgtgaatggaagtccaag
gatctagcagttactcagtctcacgcagcaagcaggcgaaggagcaagag
ctcgagctagactcccttcttccaatgtccttatattgtctccagcagaa
ggtgtagcccagattaaaggtgtgtcccaccacacctttaatcccagatg
aaaggcgtagcccagattaaaggtgtgttccttaaactcagagattcaat
cttctggaatccatagccactatggctcaagatcttcaaaccaagatcca
gataaggatctccaagcctccagataagggtcactggtgagccttccaat
tccggattgtagttcattccaaatattgtcaagttgacaaccaggaatag
ccactacacatgggtaatccacaaaccagagggctctgaggtgagaggca
gcacccaacagagaagagctccgcacagtgctgttggaggattgacagca
cagaaggtgcctgctcactctcctctccccgactctgcccttctcagggc
tgccctgtcgcatatggacctcatccaggtagagtgaaatcttgcatccc
tctggctgtagaagttgctgtgctaggtaatgaaatctttgttgttgcag
attccaaaagaaagaaggcgagaaagaagctagcccttcaagtgtgcttt
aagagcagcgagctgatggggaatgcatttcccacagcagaacagatgag
gggatttgtaagtgaggctccagcagctggtctctgggggcagggttggc
agctgccgtgtgtgt
gaattcttctggtcccaaggtacttacaattatagcttcatcacattgtt
aaacacttaaatgtgtttgacttactaagaatgagactctaaaaaattta
tacacatctttcatcaatttagaacattttttgtttcaaaggtctaagag
cagaagacagtcaccagtgaagaaaaggtgccaaggtgggaagctactat
ctcatttctcctctacctgtaggattctgaaggacggctttgtccagcag
caaatgtgattcttttctcagacttgattctcgctgcttaggtctatgag
aaccactaacttggatattttcagacatttttcttttctcctttcttggc
aactgttcatttgtcagcaatgaaaatgttttgtgagacaaacttagacg
ctctttccacttgaaataggcttagctcctataaaataatcaatggttga
aaatgcatgtcacacactctactgagcatagtagcttcaccacacagttt
acagtgttgctgttcctgagagagagagagagagagagagagagagagag
agagagagagatctcctctgtgtagaccaggctgaccttccaggtgctag
gattaaaggcatgtgccaccactgcctggctaagaaaataaattctaaac
agaaatttgattatcatggctaagccattgacaaatattcacgtatacag
tcctttaagtaagtcccagctttatattcagcagaaaatgcaattgatca
gcaaaatctaaaggagagaaaatggtggttaaactcagagcctctgagat
cactacatcaccagtagtgatgtaagtcatagtaagtttgcaacaggtaa
agcatagaataaagcagtgtaagtttatcccagtagattcacttaagtgg
ctgctagtaggatgcagtttggctgtaggaagcagtctggggaagtctct
ccagttgttatgagcctaaagtgcatttgacttttgtgtcaatactttca
gaaaagtttaactaaataaatttaatatgtgacatacaagtggtactcgg
tatataatactgttactcctagatggtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_45306463_45307016
seq2: B6Ng01-111D21.b_403_956 (reverse)

seq1  ACACACACGGCAGCTGCC-ACCCTGCCCCCAGAGACCAGCTGCTGGAGCC  49
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACACACACGGCAGCTGCCAACCCTGCCCCCAGAGACCAGCTGCTGGAGCC  50

seq1  TCACTTACAAATCCCCTCATCCTGTTCTGCTGTGGGAAATGCATTCCCCA  99
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCACTTACAAATCCCCTCAT-CTGTTCTGCTGTGGGAAATGCATTCCCCA  99

seq1  TCAGCTCGCTGCTCTTAAAGCACACTTGAAGGGCTAGCTTCTTTCTCGCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCGCTGCTCTTAAAGCACACTTGAAGGGCTAGCTTCTTTCTCGCC  149

seq1  TTCTTTCTTTTGGAATCTGCAACAACAAAGATTTCATTACCTAGCACAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTTGGAATCTGCAACAACAAAGATTTCATTACCTAGCACAGC  199

seq1  AACTTCTACAGCCAGAGGGATGCAAGATTTCACTCTACCTGGATGAGGTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTACAGCCAGAGGGATGCAAGATTTCACTCTACCTGGATGAGGTC  249

seq1  CATATGCGACAGGGCAGCCCTGAGAAGGGCAGAGTCGGGGAGAGGAGAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCGACAGGGCAGCCCTGAGAAGGGCAGAGTCGGGGAGAGGAGAGT  299

seq1  GAGCAGGCACCTTCTGTGCTGTCAATCCTCCAACAGCACTGTGCGGAGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGCACCTTCTGTGCTGTCAATCCTCCAACAGCACTGTGCGGAGCT  349

seq1  CTTCTCTGTTGGGTGCTGCCTCTCACCTCAGAGCCCTCTGGTTTGTGGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGTTGGGTGCTGCCTCTCACCTCAGAGCCCTCTGGTTTGTGGAT  399

seq1  TACCCATGTGTAGTGGCTATTCCTGGTTGTCAACTTGACAATATTTGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATGTGTAGTGGCTATTCCTGGTTGTCAACTTGACAATATTTGGAA  449

seq1  TGAACTACAATCCGGAATTGGAAGGCTCACCAGTGACCCTTATCTGGAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTACAATCCGGAATTGGAAGGCTCACCAGTGACCCTTATCTGGAGG  499

seq1  CTTGGAGATCCTTATCTGGATCTTGGTTTGAAGATCTTGAGCCATAGTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGATCCTTATCTGGATCTTGGTTTGAAGATCTTGAGCCATAGTGG  549

seq1  CTATG  554
      |||||
seq2  CTATG  554

seq1: chr17_45122796_45123888
seq2: B6Ng01-111D21.g_69_1148

seq1  GAATTCTTCTGGTCCCAAGGTACTTACAATTATAGCTTCATCACATTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGGTCCCAAGGTACTTACAATTATAGCTTCATCACATTGTT  50

seq1  AAACACTTAAATGTGTTTGACTTACTAAGAATGAGACTCTAAAAAATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTAAATGTGTTTGACTTACTAAGAATGAGACTCTAAAAAATTTA  100

seq1  TACACATCTTTCATCAATTTAGAACATTTTTTGTTTCAAAGGTCTAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATCTTTCATCAATTTAGAACATTTTTTGTTTCAAAGGTCTAAGAG  150

seq1  CAGAAGACAGTCACCAGTGAAGAAAAGGTGCCAAGGTGGGAAGCTACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACAGTCACCAGTGAAGAAAAGGTGCCAAGGTGGGAAGCTACTAT  200

seq1  CTCATTTCTCCTCTACCTGTAGGATTCTGAAGGACGGCTTTGTCCAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCTCCTCTACCTGTAGGATTCTGAAGGACGGCTTTGTCCAGCAG  250

seq1  CAAATGTGATTCTTTTCTCAGACTTGATTCTCGCTGCTTAGGTCTATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTGATTCTTTTCTCAGACTTGATTCTCGCTGCTTAGGTCTATGAG  300

seq1  AACCACTAACTTGGATATTTTCAGACATTTTTCTTTTCTCCTTTCTTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTAACTTGGATATTTTCAGACATTTTTCTTTTCTCCTTTCTTGGC  350

seq1  AACTGTTCATTTGTCAGCAATGAAAATGTTTTGTGAGACAAACTTAGACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTCATTTGTCAGCAATGAAAATGTTTTGTGAGACAAACTTAGACG  400

seq1  CTCTTTCCACTTGAAATAGGCTTAGCTCCTATAAAATAATCAATGGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCACTTGAAATAGGCTTAGCTCCTATAAAATAATCAATGGTTGA  450

seq1  AAATGCATGTCACACACTCTACTGAGCATAGTAGCTTCACCACACAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCATGTCACACACTCTACTGAGCATAGTAGCTTCACCACACAGTTT  500

seq1  ACAGTGTTGCTGTTCCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTGCTGTTCCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  550

seq1  AGAGAGAGAGATCTCCTCTGTGTAGACCAGGCTGACCTTCCAGGTGCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGATCTCCTCTGTGTAGACCAGGCTGACCTTCCAGGTGCTAG  600

seq1  GATTAAAGGCATGTGCCACCACTGCCTGGCTAAGAAAATAAATTCTAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGCATGTGCCACCACTGCCTGGCTAAGAAAATAAATTCTAAAC  650

seq1  AGAAATTTGATTATCATGGCTAAGCCATTGACAAATATTCACGTATACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTGATTATCATGGCTAAGCCATTGACAAATATTCACGTATACAG  700

seq1  TCCTTTAAGTAAGTCCCAGCTTTATATTCAGCAGAAAATGCAATTGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAAGTAAGTCCCAGCTTTATATTCAGCAGAAAATGCAATTGATCA  750

seq1  GCAAAATCTAAAGGAGAGAAAATGGTGGTTAAACTCAGAGCCTCTGAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATCTAAAGGAGAGAAAATGGTGGTTAAACTCAGAGCCTCTGAGAT  800

seq1  CACTACATCACCAGTAGTGATGTAAGTCATAGTAAGTTTGCAACAGGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACATCACCAGTAGTGATGTAAGTCATAGTAAGTTTGCAACAGGTAA  850

seq1  AGCATAGAATAAAGCAGTGTAAGTTTATCCCAGTAGATTCACTTAAGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGAATAAAGCAGTGTAAGTTTATCCCAGTAGATTCACTTAAGTGG  900

seq1  CTGCTAGTA-GATGCAGGTTTGGCTGTTGGAAGCAGTCTGGGGAAGTCTC  949
      ||||||||| |||||| |||||||||| ||||||||||||||||||||||
seq2  CTGCTAGTAGGATGCA-GTTTGGCTGTAGGAAGCAGTCTGGGGAAGTCTC  949

seq1  TCCAGTTGTTATGAAGCCTAAAGTGCATTTGACTTTTGTTGTCACATACT  999
      ||||||||||||| |||||||||||||||||||||||| ||||| |||| 
seq2  TCCAGTTGTTATG-AGCCTAAAGTGCATTTGACTTTTG-TGTCA-ATAC-  995

seq1  TTTCAGAAATAGTTTTAACCACAATTAATATTTATATGTGGACCATACAA  1049
      ||||||||| || |||||| | ||| ||| || |||||||   ||||| |
seq2  TTTCAGAAA-AG-TTTAACTA-AATAAAT-TTAATATGTG--ACATAC-A  1038

seq1  AGTGGTACTCGGTATATAATAACTGTTACTCCTAGGATGGTGGT  1093
      |||||||||||||||||||| ||||||||||||| |||||||||
seq2  AGTGGTACTCGGTATATAAT-ACTGTTACTCCTA-GATGGTGGT  1080