BAC Information

Click to search

BAC

Clone NameB6Ng01-111K07
Chromosome17 (Build37)8 (Build37)
Map Location 63,650,248 - 63,651,440124,443,731 - 124,444,138
singlet/doubletsingletsinglet
Overlap geneFbxl17
Upstream geneEfna5
Downstream genePpia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2, LOC669778, Pja2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111K07.bB6Ng01-111K07.g
ACCDH917932DH917933
length1,181178
definitionDH917932|Mus musculus domesticus DNA, BAC clone: B6Ng01-111K07, 5' end.DH917933|Mus musculus domesticus DNA, BAC clone: B6Ng01-111K07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(63,650,248 - 63,651,440)(124,443,731 - 124,444,138)
sequence
gaattctttgggttgtattcattcattcgtttccttccacttgcttcttg
cttcctccctgtctccaaatctttcctgccttaggagcaagctattgttt
tctgttttatttatgtgttgcatatgtattctgcatatagtgtaaattca
aagagcacatgggttctgaaagaaaatattctaggactgagatttcccca
acttatatattaatatcttcaacaacttactgagttaatggattttatga
ggccagtctcaggtaaatgcaaaagaaggcataagtatacataaattcaa
gggactatgacattctagccaaccctatcactcttgttaagtgcccaggg
taaaaacttacaaggtcaaatgggaagagcctgcctgaccctggtgtgga
taatcatgtcctgaggttgtgcgtggggaacgccactaatcccaaatcac
caagcttattctcatcagaaccgggaataaattaagctctgaggggaatg
gaaggtgctcttctccccaggaagaaccagggctccatgagagggcacag
cacctgccttgggcatgtcaggtggccagccagctgtgaagctcttccta
gcctttctcagttggaagcagcataatagggccattgttaactctgagaa
accaagaccctcaacttcagaaagaagtttattttcttctcaccaaagac
taagtgagggaagttctggaatacagagctaacagaattaacaaaattac
atcattcatatttttgtcaattaaataaaaacatctaatactctaatgaa
gaagcattgcctagtaagttgtttctcaaattaatcattgtacaggaagc
tctaagtaataaagtatggccagcatagtgtgtttattttgaaattaatt
gatcccctctgttataataataaaagccactccttactgtttcatatgtt
ttcaagttaattctagttaccaaactttacaatagcgcatgactagattc
ccttggtgtactatccaggaaacagagggaaatggaagagcagccactga
ctgcagcgtgcttcatcgggtctggcgtcgctcttgctctatggtgccct
gtcaataagcctctggtttgtagcattgcttgcaccacccctatccgtgg
tgtgtttacaattaacattcatgtacccttc
tattgggcatttaaagatctacagctattccttcttaaacatcctttaaa
aaagagagaagaaaagaaacagtaggaacactcccaaactctttctaaaa
agccagtatcattataatacccaaaccagttcacccccccccccccccac
acacacacgggggtggggggaggggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_63650248_63651440
seq2: B6Ng01-111K07.b_43_1223

seq1  GAATTCTTTGGGTTGTATTCATTCATTCGTTTCCTTCCACTTGCTTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGGTTGTATTCATTCATTCGTTTCCTTCCACTTGCTTCTTG  50

seq1  CTTCCTCCCTGTCTCCAAATCTTTCCTGCCTTAGGAGCAAGCTATTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCCTGTCTCCAAATCTTTCCTGCCTTAGGAGCAAGCTATTGTTT  100

seq1  TCTGTTTTATTTATGTGTTGCATATGTATTCTGCATATAGTGTAAATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTATTTATGTGTTGCATATGTATTCTGCATATAGTGTAAATTCA  150

seq1  AAGAGCACATGGGTTCTGAAAGAAAATATTCTAGGACTGAGATTTCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACATGGGTTCTGAAAGAAAATATTCTAGGACTGAGATTTCCCCA  200

seq1  ACTTATATATTAATATCTTCAACAACTTACTGAGTTAATGGATTTTATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATATATTAATATCTTCAACAACTTACTGAGTTAATGGATTTTATGA  250

seq1  GGCCAGTCTCAGGTAAATGCAAAAGAAGGCATAAGTATACATAAATTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTCTCAGGTAAATGCAAAAGAAGGCATAAGTATACATAAATTCAA  300

seq1  GGGACTATGACATTCTAGCCAACCCTATCACTCTTGTTAAGTGCCCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTATGACATTCTAGCCAACCCTATCACTCTTGTTAAGTGCCCAGGG  350

seq1  TAAAAACTTACAAGGTCAAATGGGAAGAGCCTGCCTGACCCTGGTGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTTACAAGGTCAAATGGGAAGAGCCTGCCTGACCCTGGTGTGGA  400

seq1  TAATCATGTCCTGAGGTTGTGCGTGGGGAACGCCACTAATCCCAAATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATGTCCTGAGGTTGTGCGTGGGGAACGCCACTAATCCCAAATCAC  450

seq1  CAAGCTTATTCTCATCAGAACCGGGAATAAATTAAGCTCTGAGGGGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTATTCTCATCAGAACCGGGAATAAATTAAGCTCTGAGGGGAATG  500

seq1  GAAGGTGCTCTTCTCCCCAGGAAGAACCAGGGCTCCATGAGAGGGCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGCTCTTCTCCCCAGGAAGAACCAGGGCTCCATGAGAGGGCACAG  550

seq1  CACCTGCCTTGGGCATGTCAGGTGGCCAGCCAGCTGTGAAGCTCTTCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCTTGGGCATGTCAGGTGGCCAGCCAGCTGTGAAGCTCTTCCTA  600

seq1  GCCTTTCTCAGTTGGAAGCAGCATAATAGGGCCATTGTTAACTCTGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTCAGTTGGAAGCAGCATAATAGGGCCATTGTTAACTCTGAGAA  650

seq1  ACCAAGACCCTCAACTTCAGAAAGAAGTTTATTTTCTTCTCACCAAAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGACCCTCAACTTCAGAAAGAAGTTTATTTTCTTCTCACCAAAGAC  700

seq1  TAAGTGAGGGAAGTTCTGGAATACAGAGCTAACAGAATTAACAAAATTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAGGGAAGTTCTGGAATACAGAGCTAACAGAATTAACAAAATTAC  750

seq1  ATCATTCATATTTTTGTCAATTAAATAAAAACATCTAATACTCTAATGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCATATTTTTGTCAATTAAATAAAAACATCTAATACTCTAATGAA  800

seq1  GAAGCATTGCCTAGTAAGTTGTTTCTCAAATTAATCATTGTACAGGAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATTGCCTAGTAAGTTGTTTCTCAAATTAATCATTGTACAGGAAGC  850

seq1  TCTAAGTAATAAAGTATGGCCAGCATAGTGTGTTTATTTTGAAATTAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTAATAAAGTATGGCCAGCATAGTGTGTTTATTTTGAAATTAATT  900

seq1  GATCCCCTCTGTTATAATAATAAAAGCCACTCCTTACTGTTTCAATATGT  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GATCCCCTCTGTTATAATAATAAAAGCCACTCCTTACTGTTTC-ATATGT  949

seq1  TTTCAAGTTAATTCTAGTTACCAAACTTTACAAATTAGCGCATGACTAGA  1000
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  TTTCAAGTTAATTCTAGTTACCAAACTTTACAA--TAGCGCATGACTAGA  997

seq1  TTCCCTTGGTGTTACTATCCAGGAAACAGAGGGAAATGGGAAGAGGCAGC  1050
      ||||||||||| ||||||||||||||||||||||||| |||||| |||||
seq2  TTCCCTTGGTG-TACTATCCAGGAAACAGAGGGAAAT-GGAAGA-GCAGC  1044

seq1  CACTGACTGCAAGCGTGGCTTCATCGGGTCCTGGCGTCGCTCTTGCTTCT  1100
      |||||||||| ||||| |||||||||||| |||||||||||||||| |||
seq2  CACTGACTGC-AGCGT-GCTTCATCGGGT-CTGGCGTCGCTCTTGC-TCT  1090

seq1  AATTGTGCCCCTGTCATTAAGCCTCTGTATTGTTAGCATATGC-TGCACC  1149
       || ||| |||||||| ||||||||||  ||| |||||| ||| ||||||
seq2  -ATGGTG-CCCTGTCAATAAGCCTCTGGTTTG-TAGCAT-TGCTTGCACC  1136

seq1  A-CACTATCTGTGTTGGTTTTACAATTAACATTCATGTACCCTTC  1193
      | | ||||| ||| ||  |||||||||||||||||||||||||||
seq2  ACCCCTATCCGTGGTGTGTTTACAATTAACATTCATGTACCCTTC  1181

seq1: chr8_124443731_124444138
seq2: B6Ng01-111K07.g_205_251

seq1  CACCCCCCTACCCCCCCCCACACACACACCCTGCCTCGCATCTGCTCTTG  50
      ||||||||  |||||||||||||||||||   |    |     |     |
seq2  CACCCCCC--CCCCCCCCCACACACACACGGGGGTGGG-----GGGAGGG  43

seq1  GGTATTGCCCAAGCTCTCTGCCCTCCTCTAAGACAGCTGGAGTCAGCCTG  100
      |  |                                              
seq2  GAGA----------------------------------------------  47

seq1  GCCTCTGCCTCAGGCAAGTTCATAGCTGAGTTTGCAACACTTCCTAGGTT  150
                                                        
seq2  --------------------------------------------------  47

seq1  TCATAAGACTCTCAGCTCCCTTGGGAGCCACTGTCCTTCTGCTCCTACAA  200
                                                        
seq2  --------------------------------------------------  47

seq1  GCAAGCATTCCTTTCATTTCATCACAGATGCCTGTGTGAGTGACCTGTGT  250
                                                        
seq2  --------------------------------------------------  47

seq1  GAGCCTAACTTTGCCTCAGGTGCTGAGGACACAGAAAAGTGGACAGAACC  300
                                                        
seq2  --------------------------------------------------  47

seq1  ACTTCCTTCTACACGAACCCCCATAGGACCAGTAAGCAAAAAACAAGCAC  350
                                                        
seq2  --------------------------------------------------  47

seq1  TTCACACTGGGGACAAGGTGGAGAAGCAGGACAGGGGGTGGGGGTGGGGG  400
                                                        
seq2  --------------------------------------------------  47

seq1  TGGGGAGA  408
              
seq2  --------  47