BAC Information

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BAC

Clone NameB6Ng01-111O02
Chromosome17 (Build37)
Map Location 34,649,561 - 34,800,960
singlet/doubletdoublet
Overlap geneLOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1
Upstream geneAdamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5
Downstream geneTnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111O02.bB6Ng01-111O02.g
ACCDH918100DH918101
length960407
definitionDH918100|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O02, 5' end.DH918101|Mus musculus domesticus DNA, BAC clone: B6Ng01-111O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,649,561 - 34,650,517)(34,800,548 - 34,800,960)
sequence
tgagagaagcacccagtgtacctcaactgaaacaactccaaagccaggta
cacttataccaggagcacgaacattcccatctccttcccactgagggaag
caacccaagtctctacccatcaccttgatcaacaccttcagatgctaagg
gagcagagccctggaagatgactgaggaacgggtgcaggtcatactcctg
catctgtgacctcttttgctggttagatgttgtcaattttcaaaagctaa
agtcatctgacaggaaggagcttcaactgagaaaatggctcctatagact
agctgaaggcaaggcagcagggttttcttgacgggttgatgaagaagggg
cctgcccactgtggacggttccacacctacacaggtggtccaggagtggg
ccatcaagacaattgagaaagccattgggagcaaacagggaagcagcctt
cctctgtggtctctgcttcagttcctgatctaggtccctactctaggtcc
ctaccttgagttttctgccctggtttttccccattaatatattgcgattt
gaaaatgtgtacaacaaataaaccattccctccccaaaaatgcattagtt
tcatacagcaatagaaacctaactaaaacacttttctttgcagaaatgtt
aacactgcagtctgatctcaggtgcagacagaagtcaagagcaacttgga
ccctaagggagtcagctccttgatgcagctcctgcattcaaggttcttat
ctgtttgaattcctgcccttactttgctgtgaacagggactgggagtgtg
agtcaggtaacactttccctattaaattaaagtgtatgaagtggttggat
taccaccccagggcagaggacaatccaagagtctgagcaatatcataagg
atccttaacaccaggcttctaccttcattaaattcatttcctggtcccaa
aagaagtaca
tctgggaaaactggagagacagtttgagaagaaatgtatgaggtaggaga
gagggcttgaacagggagcaggaagagacagggtaggtttgaactggggt
aagagttgtgccatgttggcaggtgcccagatcctctgaaacagagaggc
tgagagggcaggaggcagagtgaacagtgggagtgttggctggccaggaa
ggaaggactgtgactccccctctcccaatggacacacatcctaggttcct
ctgggccaaagaggaaggtgtttgcatagcctctccatgactggtgatca
agagacagaaggatgctactcagttgctggggtgcctgcctagcatacag
aaggctctaattatgatcccctgaatcacataactaggtgtggtggcaca
tgcctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_34649561_34650517
seq2: B6Ng01-111O02.b_43_1002

seq1  TGAGAGAAGCACCCAGTGTACCTCAACTGAAACAACTCCAAAGCCAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAAGCACCCAGTGTACCTCAACTGAAACAACTCCAAAGCCAGGTA  50

seq1  CACTTATACCAGGAGCACGAACATTCCCATCTCCTTCCCACTGAGGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATACCAGGAGCACGAACATTCCCATCTCCTTCCCACTGAGGGAAG  100

seq1  CAACCCAAGTCTCTACCCATCACCTTGATCAACACCTTCAGATGCTAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAAGTCTCTACCCATCACCTTGATCAACACCTTCAGATGCTAAGG  150

seq1  GAGCAGAGCCCTGGAAGATGACTGAGGAACGGGTGCAGGTCATACTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGCCCTGGAAGATGACTGAGGAACGGGTGCAGGTCATACTCCTG  200

seq1  CATCTGTGACCTCTTTTGCTGGTTAGATGTTGTCAATTTTCAAAAGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGACCTCTTTTGCTGGTTAGATGTTGTCAATTTTCAAAAGCTAA  250

seq1  AGTCATCTGACAGGAAGGAGCTTCAACTGAGAAAATGGCTCCTATAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTGACAGGAAGGAGCTTCAACTGAGAAAATGGCTCCTATAGACT  300

seq1  AGCTGAAGGCAAGGCAGCAGGGTTTTCTTGACGGGTTGATGAAGAAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAGGCAAGGCAGCAGGGTTTTCTTGACGGGTTGATGAAGAAGGGG  350

seq1  CCTGCCCACTGTGGACGGTTCCACACCTACACAGGTGGTCCAGGAGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCACTGTGGACGGTTCCACACCTACACAGGTGGTCCAGGAGTGGG  400

seq1  CCATCAAGACAATTGAGAAAGCCATTGGGAGCAAACAGGGAAGCAGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAGACAATTGAGAAAGCCATTGGGAGCAAACAGGGAAGCAGCCTT  450

seq1  CCTCTGTGGTCTCTGCTTCAGTTCCTGATCTAGGTCCCTACTCTAGGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGGTCTCTGCTTCAGTTCCTGATCTAGGTCCCTACTCTAGGTCC  500

seq1  CTACCTTGAG-TTTCTGCCCTGG-TTTTCCCCATTAATATATTGCGATTT  548
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  CTACCTTGAGTTTTCTGCCCTGGTTTTTCCCCATTAATATATTGCGATTT  550

seq1  GAAAATGTGTACAACAAATAAACCATTCCCTCCCC-AAAATGCATTAGTT  597
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAAAATGTGTACAACAAATAAACCATTCCCTCCCCAAAAATGCATTAGTT  600

seq1  TCATACAGCAATAGAAACCTAACTAAAACAC-TTTCTTTGCAGAAATGTT  646
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCATACAGCAATAGAAACCTAACTAAAACACTTTTCTTTGCAGAAATGTT  650

seq1  AACACTGCAGTCTGATCCCAGGTGCAGACAGAAGTCAAGAGCAAC-TGGA  695
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  AACACTGCAGTCTGATCTCAGGTGCAGACAGAAGTCAAGAGCAACTTGGA  700

seq1  CCCTAAGGGAGCCAGCTCCTTGATGCAGCTCCTGCA-TCCAGGTTCTTAT  744
      ||||||||||| |||||||||||||||||||||||| || ||||||||||
seq2  CCCTAAGGGAGTCAGCTCCTTGATGCAGCTCCTGCATTCAAGGTTCTTAT  750

seq1  CTGTTTGAATTCCTGCCCTAAC-TTGCTGTGAACAGGGACTGGGAGTGTG  793
      ||||||||||||||||||| || |||||||||||||||||||||||||||
seq2  CTGTTTGAATTCCTGCCCTTACTTTGCTGTGAACAGGGACTGGGAGTGTG  800

seq1  AGTCAAGTAAACACTTT-CCTATATAAAATAAAGTGTAAGGAAGTGGTTG  842
      ||||| || |||||||| ||||| |||| |||||||| | ||||||||||
seq2  AGTCAGGT-AACACTTTCCCTAT-TAAATTAAAGTGT-ATGAAGTGGTTG  847

seq1  GATTACCA-CCCAGGGCAGAGGACAAATCCAAGAGTTCTGAGCAGAGATC  891
      |||||||| ||||||||||||||| |||||||||| |||||||| | |||
seq2  GATTACCACCCCAGGGCAGAGGAC-AATCCAAGAG-TCTGAGCA-ATATC  894

seq1  AGAAGGATCCTAAACACCAGGCTTCTACCTTCCAGTAAATTCCATTTCTG  941
      | ||||||||| ||||||||||||||||||| || |||||||  || |||
seq2  ATAAGGATCCTTAACACCAGGCTTCTACCTT-CATTAAATTCATTTCCTG  943

seq1  TCCCCAAAAG-AGTACA  957
        |||||||| ||||||
seq2  GTCCCAAAAGAAGTACA  960

seq1: chr17_34800548_34800960
seq2: B6Ng01-111O02.g_70_482 (reverse)

seq1  ACAGGCATGTGCCACCACACCTAGTTATGTGATTCAGGGGATCATACTTA  50
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACAGGCATGTGCCACCACACCTAGTTATGTGATTCAGGGGATCATAATTA  50

seq1  GAGCCTTCTGTATGCTAGGCAGGCACCCCAGCAACTGAGTAGCATCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTCTGTATGCTAGGCAGGCACCCCAGCAACTGAGTAGCATCCTTC  100

seq1  TGTCTCTTGATCACCAGTCATGGAGAGGCTATGCAAACACCTTCCTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTGATCACCAGTCATGGAGAGGCTATGCAAACACCTTCCTCTTT  150

seq1  GGCCCAGAGGAACCTAGGATGTGTGTCCATTGGGAGAGGGGGAGTCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGAGGAACCTAGGATGTGTGTCCATTGGGAGAGGGGGAGTCACAG  200

seq1  TCCTTCCTTCCTGGCCAGCCAACACTCCCACTGTTCACTCTGCCTCCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTCCTGGCCAGCCAACACTCCCACTGTTCACTCTGCCTCCTGC  250

seq1  CCTCTCAGCCTCTCTGTTTCAGAGGATCTGGGCACCTGCCAACATGGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGCCTCTCTGTTTCAGAGGATCTGGGCACCTGCCAACATGGCAC  300

seq1  AACTCTTACCCCAGTTCAAACCTACCCTGTCTCTTCCTGCTCCCTGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTACCCCAGTTCAAACCTACCCTGTCTCTTCCTGCTCCCTGTTCA  350

seq1  AGCCCTCTCTCCTACCTCATACATTTCTTCTCAAACTGTCTCTCCAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCTCTCCTACCTCATACATTTCTTCTCAAACTGTCTCTCCAGTTT  400

seq1  TCCCAGAGAATTC  413
      |||||||||||||
seq2  TCCCAGAGAATTC  413