BAC Information

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BAC

Clone NameB6Ng01-112A03
Chromosome17 (Build37)1 (Build37)
Map Location 29,070,408 - 29,070,589177,217,384 - 177,218,476
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAnks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik
Downstream genePxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112A03.bB6Ng01-112A03.g
ACCDH918193DH918194
length2971,091
definitionDH918193|Mus musculus domesticus DNA, BAC clone: B6Ng01-112A03, 5' end.DH918194|Mus musculus domesticus DNA, BAC clone: B6Ng01-112A03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,070,408 - 29,070,589)(177,217,384 - 177,218,476)
sequence
aatacttagctggttacaaagataaattaataaaaaaagaacgtgcagaa
cattatagagctgttcaaaacatcaaatttatgatgcatgaacataggaa
aagaagaatttatattagaaggctagaatatatatatataatttggtttt
tcgagacagggtttctctgtatagccctggctgtcctggagctcactctg
tagaccaggatggcctcgaactcagaaatccacctgcctatgcctcccaa
gtgctgggattaaagacatgtgccaccactgtgaaaatatttttaat
gaattcaatctctaggggaggatggttaattctctaatcttatttttatt
ttaatcactattgatgttgtcattgttatcatggtgctggagggaccata
ttgttatcaagatgcagggccttggatctttggctatgctagataagacc
cctttcttgatgcaatagccctagaccactattgtgttacgtgagatctt
gctgtgtggcttagagtgctgtgaagttttgatctgctctccatctcctg
agcccttggattatagataagcaccgcacacccagctgaatttcatttta
aaaggcaaatagtaggaaggcattataacctgaaggcaaagcagtggccc
ttagagaggacaaaatgtcaataagcccctgaagaaggccattcctggtg
tgcatactaacaaatattgccatgagtcacataaggacatactggttaac
gaccgactgcatgcatgaccatgctctcctgtgaccagctaatgacatag
ccattattacatcagattgcccacaaggacatgggaaggcagcatagtgc
atttgtgtgcccaactcatgtttgtgttgacactggtgtgaacaaaataa
gcgagcttccaactccataaagtatgtaacacagttctaccccagggagt
atttgataacctcagttaatggtaactggttctatgttcactatactatt
tatttatcattaaagtgaaatatgagggagcttagagggaggaaaaaaac
aaatgaaatgatgtagttatattataacctcaaaaaataatttttaaaaa
gtgtatgtcctatactagataaataaatgcttacttcaaagtcatttggc
attatgtgcctcaaacatctcatacctttcttcccctgtcttaaaattac
attttttttgctatgtacacaacgatctttatttaacctcatacattttg
ttgtcctgggccgagcagcagcaggcactagctgtatggtagcttaaggt
gcagggaaggctataccctccggtgtcccacacagtggaaatggcctaag
aatgtgatccgctttcaggatcatgctgcttgcactcgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_29070408_29070589
seq2: B6Ng01-112A03.b_179_347

seq1  TATATATATATATTTGTTTGTTTTTGTTTTTCGAGACAGGGTTTCTCTGT  50
      ||||||||||||         ||| |||||||||||||||||||||||||
seq2  TATATATATATA--------ATTTGGTTTTTCGAGACAGGGTTTCTCTGT  42

seq1  ATAGCCCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAA  100
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  ATAGCCCTGGCTGTCCTGGAGCTCACTCTGTAGACCAGGATGGCCTCGAA  92

seq1  CTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTG  150
      ||||||||||| ||||||| |||||||| |||||||||||||||| | ||
seq2  CTCAGAAATCCACCTGCCTATGCCTCCCAAGTGCTGGGATTAAAGACATG  142

seq1  TGCCACCACGCCCGGCCAAAATATATTTTAAT  182
      ||||||||    | |  ||||||| |||||||
seq2  TGCCACCA----CTGTGAAAATAT-TTTTAAT  169

seq1: chr1_177217384_177218476
seq2: B6Ng01-112A03.g_67_1157

seq1  GAATTCAATCTCTAGGGGAGGATGGTTAATTCTCTAATCTTATTTTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTCTAGGGGAGGATGGTTAATTCTCTAATCTTATTTTTATT  50

seq1  TTAATCACTATTGATGTTGTCATTGTTATCATGGTGCTGGAGGGACCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCACTATTGATGTTGTCATTGTTATCATGGTGCTGGAGGGACCATA  100

seq1  TTGTTATCAAGATGCAGGGCCTTGGATCTTTGGCTATGCTAGATAAGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATCAAGATGCAGGGCCTTGGATCTTTGGCTATGCTAGATAAGACC  150

seq1  CCTTTCTTGATGCAATAGCCCTAGACCACTATTGTGTTACGTGAGATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTGATGCAATAGCCCTAGACCACTATTGTGTTACGTGAGATCTT  200

seq1  GCTGTGTGGCTTAGAGTGCTGTGAAGTTTTGATCTGCTCTCCATCTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGGCTTAGAGTGCTGTGAAGTTTTGATCTGCTCTCCATCTCCTG  250

seq1  AGCCCTTGGATTATAGATAAGCACCGCACACCCAGCTGAATTTCATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTGGATTATAGATAAGCACCGCACACCCAGCTGAATTTCATTTTA  300

seq1  AAAGGCAAATAGTAGGAAGGCATTATAACCTGAAGGCAAAGCAGTGGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAAATAGTAGGAAGGCATTATAACCTGAAGGCAAAGCAGTGGCCC  350

seq1  TTAGAGAGGACAAAATGTCAATAAGCCCCTGAAGAAGGCCATTCCTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAGGACAAAATGTCAATAAGCCCCTGAAGAAGGCCATTCCTGGTG  400

seq1  TGCATACTAACAAATATTGCCATGAGTCACATAAGGACATACTGGTTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACTAACAAATATTGCCATGAGTCACATAAGGACATACTGGTTAAC  450

seq1  GACCGACTGCATGCATGACCATGCTCTCCTGTGACCAGCTAATGACATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGACTGCATGCATGACCATGCTCTCCTGTGACCAGCTAATGACATAG  500

seq1  CCATTATTACATCAGATTGCCCACAAGGACATGGGAAGGCAGCATAGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATTACATCAGATTGCCCACAAGGACATGGGAAGGCAGCATAGTGC  550

seq1  ATTTGTGTGCCCAACTCATGTTTGTGTTGACACTGGTGTGAACAAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTGCCCAACTCATGTTTGTGTTGACACTGGTGTGAACAAAATAA  600

seq1  GCGAGCTTCCAACTCCATAAAGTATGTAACACAGTTCTACCCCAGGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCTTCCAACTCCATAAAGTATGTAACACAGTTCTACCCCAGGGAGT  650

seq1  ATTTGATAACCTCAGTTAATGGTAACTGGTTCTATGTTCACTATACTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATAACCTCAGTTAATGGTAACTGGTTCTATGTTCACTATACTATT  700

seq1  TATTTATCATTAAAGTGAAATATGAGGGAGCTTAGAGGGAGGAAAAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATCATTAAAGTGAAATATGAGGGAGCTTAGAGGGAGGAAAAAAAC  750

seq1  AAATGAAATGATGTAGTTATATTATAACCTCAAAAAATAATTTTTAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATGATGTAGTTATATTATAACCTCAAAAAATAATTTTTAAAAA  800

seq1  GTGTATGTCCTATACTAGATAAATAAATGCTTACTTCAAAGTCATTTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTCCTATACTAGATAAATAAATGCTTACTTCAAAGTCATTTGGC  850

seq1  ATTATGTGCCTCAAACATCTCATACCTTTCTTCCCCTGTCTTAAAATTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTGCCTCAAACATCTCATACCTTTCTTCCCCTGTCTTAAAATTAC  900

seq1  ATTTTTTTTGCTATGTACACAACGATCTTTATTTAACCTCATACATTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATTTTTTTTGCTATGTACACAACGATCTTTATTTAACCTCATACATTTTG  950

seq1  GTGTCCTGGGCCGAGCAGCAGCAGGCACTAGCTGTAT-GTAGC-TGAGGT  998
       |||||||||||||||||||||||||||||||||||| ||||| | ||||
seq2  TTGTCCTGGGCCGAGCAGCAGCAGGCACTAGCTGTATGGTAGCTTAAGGT  1000

seq1  GCAGGGAAGGCTATACCCTCCGGTGTCTCACACAGT-GAAATGGCCTAAG  1047
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  GCAGGGAAGGCTATACCCTCCGGTGTCCCACACAGTGGAAATGGCCTAAG  1050

seq1  -ATGTGGTTTCTGCTATTCAGTGATACATGGCTGCCTGCACTCGACA  1093
       |||||   || ||| ||||| ||| ||| ||||| |||||||||||
seq2  AATGTG--ATCCGCT-TTCAG-GAT-CAT-GCTGCTTGCACTCGACA  1091