BAC Information

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BAC

Clone NameB6Ng01-112J07
Chromosome17 (Build37)
Map Location 18,703,036 - 18,703,689
singlet/doubletsinglet
Overlap geneEG433070
Upstream geneLnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114
Downstream geneVmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112J07.bB6Ng01-112J07.g
ACCDH918608DH918609
length1,2311,104
definitionDH918608|Mus musculus domesticus DNA, BAC clone: B6Ng01-112J07, 5' end.DH918609|Mus musculus domesticus DNA, BAC clone: B6Ng01-112J07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaaatacttttttgtcttgggctttttccattctaagttatcag
tgcctgagggcatttaaaccacactctgtcatcttcaacattcaggcttc
tcctttggagtttgacaaaatggatcctctatgtctccttacacagacat
ccctgttataatactgaccttaacaaatgtccttagtcacagagaaagat
gccagaatacctttttttttttttcaatccttgactcttaatgccagaac
cacatggttgaacctgccaagttatgttacttgcaagagaaataacatgg
ctcccttggaaaattaaatctttaccaattttctattcttgtggttttct
tttattttctaaattagtatatcctgaaactctatctgtacacaaggttg
gtggccttaaactacttttcacaaatatgaagcattgttgggaagaattt
tgcccagagattttcaacccccttcccctttttttttttcattttacatt
attctttcctttaatatctgtatgtgtttgagcaaaggaattaggtcaat
ggcagtttttagtattattagtactaatttctctatagtctgtacattgt
aaatttttgttacttagatttatacatttctttatgtatcttcatatgtt
tgaatattaatgagcacatgacaatacaataaaaggccatgttgagattt
tctttgccagtggaattaatcaataaccctatactttaacttcaggttca
ctttctgaaagtgaaaatgaagcatcgttcttttccaacatatctaaaga
aaaacactaattctcatctccttttgtctacttgactcaaacattcagaa
gtcaaattacactcagcacattttttttgcacatacttccttggttggct
cattaagcagaacttaaagtatttcattgttttcctttaaaaaggcccaa
gtcatcttcctcagataaataagaagtagtaacaaccaataatatttacc
ccatcaaaatataaaccaaaagcattccctccaagtagacccttttccaa
atcaacattgtcgtcttgggttggtcatggagacccatgacctaaagcct
tagaagacataacttccagacctgccattatctttggaacttgcaatgca
gattgctcgcagagctggagttaccttatccagccagtagctcgacgact
tagtcataccctaggacgactcagcacgact
gaattctactcatctcgacctttcgctgacaaagggcttctccacctgga
tttcctctgcattttcctactttaaggagtgagtgggggtaggcttgttt
gccgtgatcctatttggtggagcattgcttttgctctggatggtctgtaa
acttaaagcccaaactaaaagagacaagatggtgatagcctaagcacttg
cagcattagaacacggtgtcttaccttatatatggttatctatgcttaag
caataggtcgctggctgctcagctcttacaccccatgaggctagtctcat
tgcacgggatagagtgagtgtgcttcagcagcctgagagagttgcacggc
taagcactgcagtagaaaggctctgcggcataaaatgagcctattctagg
gagacatgtcatcttgtataaaggttgagtttccaagtgtccttccccca
ggaaaaaaatgacacaggagcagaccaagacccctctgggtgatgagcct
ggaaggaggttttgtgtaatgcccctatttttgcacactggggatttgac
ctctatctccactctcagtactgggtggcctgttgccttttaaataaaag
aaaagggggagatgtgaggagccgcccttgcaatcgccattacaagatgg
ctctgacatccggtgttctaactggtagacaagtagtctgcgcatgtgct
gtggtatttttccattccttgtgccctgcctgtcccgtggcgtcatctgg
gctgatggtgagcaaccagtcagggcgagacacgtctccaaccgctcttc
gtggtctatttaaggaccgagtttcctgtgttctgggtctcctccccaga
agttgatcatctttctctcgagatgcattaaagctttgctgcagaaggat
ccgagtgtgtcctgcgtgtgtgtcctcgccgacgagactctcatcacaca
gggacaccctcatggtgttatactgttcccactaatcagagattgatcac
ttactttgattcctttacatcagtcacgtatatgttctttaaaatgaagg
aggacaagtagctttgactcctctggcacaattgtgtttcaatctattac
taac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_18703036_18703689
seq2: B6Ng01-112J07.g_525_1170

seq1  ATGACACAGGAGCAGACCAAGACCCCTCTGGGTGATGAGCCTGGAAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACAGGAGCAGACCAAGACCCCTCTGGGTGATGAGCCTGGAAGGAG  50

seq1  GTTTTGTGTAATGCCCCTATTTTTGCACACTGGGGATTTGACCTCTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGTAATGCCCCTATTTTTGCACACTGGGGATTTGACCTCTATCT  100

seq1  CCACTCTCAGTACTGGGTGGCCTGTTGCCTTTTAAATAAAAGAAAAGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTCAGTACTGGGTGGCCTGTTGCCTTTTAAATAAAAGAAAAGGGG  150

seq1  GAGATGTGAGGAGCCGCCCTTGCAATCGCCATTACAAGATGGCTCTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTGAGGAGCCGCCCTTGCAATCGCCATTACAAGATGGCTCTGACA  200

seq1  TCCGGTGTTCTAACTGGTAGACAAGTAGTCTGCGCATGTGCTGTGGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGTGTTCTAACTGGTAGACAAGTAGTCTGCGCATGTGCTGTGGTATT  250

seq1  TTTCCATTCCTTGTGCCCTGCCTGTCCCGTGGCGTCATCTGGGCTGATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTCCTTGTGCCCTGCCTGTCCCGTGGCGTCATCTGGGCTGATGG  300

seq1  TGAGCAACCAGTCAGGGCGAGACACGTCTCCAACCGCTCTTCGTGGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAACCAGTCAGGGCGAGACACGTCTCCAACCGCTCTTCGTGGTCTA  350

seq1  TTTAAGGACCGAGTTTCCTGTGTTCTGGGTCTCCTCCCCAGAAGTTGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGACCGAGTTTCCTGTGTTCTGGGTCTCCTCCCCAGAAGTTGATC  400

seq1  ATCTTTCTCTCGAGATGCATTAAAGCTTTGCTGCAGAAGGATCCGAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTCTCGAGATGCATTAAAGCTTTGCTGCAGAAGGATCCGAGTGT  450

seq1  GTCCTGCGTGTGTGTCCTCGCCGACGAGACTCCTCATCACACAGGGACAC  500
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  GTCCTGCGTGTGTGTCCTCGCCGACGAGACT-CTCATCACACAGGGACA-  498

seq1  CCCTCATGGTGTTATAACTGTTCCCACTAATCAGAGAATTGATCAACTTA  550
      ||||||||||||||| |||||||||||||||||||| ||||||| |||||
seq2  CCCTCATGGTGTTAT-ACTGTTCCCACTAATCAGAG-ATTGATC-ACTTA  545

seq1  CTTTGATTCCTTTACATCAGTCACCGTATATGTTCTTTAAAAATGAGAGA  600
      ||||||||||||||||||||||| |||||||||||||| |||||||  ||
seq2  CTTTGATTCCTTTACATCAGTCA-CGTATATGTTCTTT-AAAATGAAGGA  593

seq1  GGACAAAGTAGCTTTGACTCCTCTGGCACAAATTGTG-TTCAATCTATTA  649
      |||| |||||||||||||||||||||||| ||||||| ||||||||||||
seq2  GGAC-AAGTAGCTTTGACTCCTCTGGCAC-AATTGTGTTTCAATCTATTA  641

seq1  CTAAC  654
      |||||
seq2  CTAAC  646