BAC Information

Click to search

BAC

Clone NameB6Ng01-112K08
Chromosome17 (Build37)
Map Location 89,800,075 - 89,925,533
singlet/doubletdoublet
Overlap genenone
Upstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr, LOC100043904
Downstream geneLOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112K08.bB6Ng01-112K08.g
ACCDH918655DH918656
length1,0721,145
definitionDH918655|Mus musculus domesticus DNA, BAC clone: B6Ng01-112K08, 5' end.DH918656|Mus musculus domesticus DNA, BAC clone: B6Ng01-112K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,924,447 - 89,925,533)(89,800,075 - 89,801,213)
sequence
gaattcatcatatctgagcaacctgcacagctcctgcgctaactgccatg
ccttcttagagagcactgaggacagcagatgaagcttgggtcttaaaagt
agggattttaataaaagacgtcaagataattgcattaaaatactctctgc
cattattgcatgctctatctttttgaggccagagtggtacgacagctatg
atggaatcacaaggttcctgtaacagttaggcatgctatgtctatcagga
catttgtatttaccccacgtgattgaagaatgactggtgcccatgacttg
tctgcctggtgagtccatgttgagcctattatactttgcttaccattctg
cctctactctttgcttgttttcattaatgggaatatatagttcaaacaca
cagagcattataaatattcctatatttataagacttgtgaacttttgaaa
gatgaaaagaaaaaaaaaacagaataaaggataaaatagtggtctgtaaa
ttctccaaacatataatttataattattttaaaaattaaatgatacctta
aaaatatagaattatgtcagctgggtacttgtggctcatgcctttaatcc
cagtacttgggaggcagaggcaggcagatctctgaatttgaggccagcct
ggttcacacagtgagttccaggacagccagtgctacacagaaaaaccctg
tttgaaaaaaacaaaaataaaaacaaaaaaaattagaaatatgtatacca
agcagaaaataaaattacttttcaaaaaataactattattgttagtattt
cataagcatatatacacacatacatatttacgtatataataattcccttt
atgtatcattacaagcatgattttatatatctgctatttgttcatgttat
acactggtgaatgcttgcatagttatatgttaaattttgatatttatttc
ttgaggagggttggacatgccacagtgctgtgtgagcaagagacacttga
agattttctttctatcatgtgggtactagagatcaactcagtcacaattt
tgcagtatgattcgtatgctct
gaattcatttggtagagaacacagcgagggggaagccaaggttggtctat
tgtcatagtgtactaataggatgaattcaaatggaaccagatagatttgt
ctttcttgatttacctttgagagaaaagaagatggtatacaaatcccagg
cctaataattgttctgccttgtgacagagacaaatacctgcatttgagta
gagaataaaagtttaaatgtttgatagatttcttgttgtttttattgatc
aaaatttctcttgccctgggacttaattgtatcttttgaagaaatacaat
tttatcttttgacttttaatagccaaatcttccacaagaaattgttttct
ataattttaagagatagaaatattattaaaattaggggccccttttatag
ttcttagttttgtttataaaatgattcatcaagaaattcagaaagaaatc
tggaggaacatctcattagagtttgaaagacaacagagcagataatctcc
aaattttggtagctgtcataaagaaggtaagaacatcatgtcttttaagt
tagacatgggtatagacaagcaggtgaatgggggataaaggctcttttat
ttatatacctatattaaccctattctttattgcatttaggtatttatgaa
ttacatggtattttttataatttttattaggtattttcctcatttacatt
tccaatgctatccccaaagtcccccataccctccctcccaccccctaccc
acccactcccactttttggccctggattttccctgtactagggcatataa
agtttgcaagtccaattggcctctctttccagtgatggcctacaaagcca
tctttttgatacatatgcagctagagtcaagatctccagggtactggtta
gttcataattgttgttccacctatagggttgcagatccccccagctactt
ggttacttttatctagctcctccattgggggccctatgatccatccatag
ctgactatgaggcatccacttatgggtttgtaggcccaagaatagtctca
caagagacagctatattcatgggtcctttcagcaaatctttgctagttgg
tgcaatggtgtcacgcatttggaggctggcttatgggatggatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89924447_89925533
seq2: B6Ng01-112K08.b_51_1122 (reverse)

seq1  AGAGCATACGGAATCATACTGCCAAAATTGTTGACTTGAGTTTGATCTCT  50
      ||||||||| ||||||||||| |||||||| |||| |||| |||||||||
seq2  AGAGCATAC-GAATCATACTG-CAAAATTG-TGAC-TGAG-TTGATCTCT  45

seq1  AGTACCCACATGATAGGAGAGAAAATTCTTCCAAGTTGTCCTCTTGGCTC  100
      ||||||||||||||| || |||||| |||| |||| ||| ||||| ||| 
seq2  AGTACCCACATGATA-GAAAGAAAA-TCTT-CAAG-TGT-CTCTT-GCT-  88

seq1  CACACAAGCACTGTGGCATGTCCAACCCTCCTCCAAGAAATAAATATCAA  150
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  CACAC-AGCACTGTGGCATGTCCAACCCTCCT-CAAGAAATAAATATCAA  136

seq1  AATTTTACATATAACTATGCAAGCATTCACCAGTTGTATAACATGAACAA  200
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATTTAACATATAACTATGCAAGCATTCACCAG-TGTATAACATGAACAA  185

seq1  ATAGCAGATATATAAAATCATGCTTGTAATGATACATAAAGGGAATTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGATATATAAAATCATGCTTGTAATGATACATAAAGGGAATTATT  235

seq1  ATATACGTAAATATGTATGTGTGTATATATGCTTATGAAATACTAACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACGTAAATATGTATGTGTGTATATATGCTTATGAAATACTAACAAT  285

seq1  AATAGTTATTTTTTGAAAAGTAATTTTATTTTCTGCTTGGTATACATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTATTTTTTGAAAAGTAATTTTATTTTCTGCTTGGTATACATATT  335

seq1  TCTAATTTTTTTTGTTTTTATTTTTGTTTTTTTCAAACAGGGTTTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTTTTTTGTTTTTATTTTTGTTTTTTTCAAACAGGGTTTTTCTG  385

seq1  TGTAGCACTGGCTGTCCTGGAACTCACTGTGTGAACCAGGCTGGCCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCACTGGCTGTCCTGGAACTCACTGTGTGAACCAGGCTGGCCTCAA  435

seq1  ATTCAGAGATCTGCCTGCCTCTGCCTCCCAAGTACTGGGATTAAAGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAGATCTGCCTGCCTCTGCCTCCCAAGTACTGGGATTAAAGGCAT  485

seq1  GAGCCACAAGTACCCAGCTGACATAATTCTATATTTTTAAGGTATCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACAAGTACCCAGCTGACATAATTCTATATTTTTAAGGTATCATTT  535

seq1  AATTTTTAAAATAATTATAAATTATATGTTTGGAGAATTTACAGACCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAAAATAATTATAAATTATATGTTTGGAGAATTTACAGACCACT  585

seq1  ATTTTATCCTTTATTCTGTTTTTTTTTTCTTTTCATCTTTCAAAAGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCCTTTATTCTGTTTTTTTTTTCTTTTCATCTTTCAAAAGTTCA  635

seq1  CAAGTCTTATAAATATAGGAATATTTATAATGCTCTGTGTGTTTGAACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTTATAAATATAGGAATATTTATAATGCTCTGTGTGTTTGAACTA  685

seq1  TATATTCCCATTAATGAAAACAAGCAAAGAGTAGAGGCAGAATGGTAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCCATTAATGAAAACAAGCAAAGAGTAGAGGCAGAATGGTAAGC  735

seq1  AAAGTATAATAGGCTCAACATGGACTCACCAGGCAGACAAGTCATGGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATAATAGGCTCAACATGGACTCACCAGGCAGACAAGTCATGGGCA  785

seq1  CCAGTCATTCTTCAATCACGTGGGGTAAATACAAATGTCCTGATAGACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCATTCTTCAATCACGTGGGGTAAATACAAATGTCCTGATAGACAT  835

seq1  AGCATGCCTAACTGTTACAGGAACCTTGTGATTCCATCATAGCTGTCGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCCTAACTGTTACAGGAACCTTGTGATTCCATCATAGCTGTCGTA  885

seq1  CCACTCTGGCCTCAAAAAGATAGAGCATGCAATAATGGCAGAGAGTATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTGGCCTCAAAAAGATAGAGCATGCAATAATGGCAGAGAGTATTT  935

seq1  TAATGCAATTATCTTGACGTCTTTTATTAAAATCCCTACTTTTAAGACCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAATTATCTTGACGTCTTTTATTAAAATCCCTACTTTTAAGACCC  985

seq1  AAGCTTCATCTGCTGTCCTCAGTGCTCTCTAAGAAGGCATGGCAGTTAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCATCTGCTGTCCTCAGTGCTCTCTAAGAAGGCATGGCAGTTAGC  1035

seq1  GCAGGAGCTGTGCAGGTTGCTCAGATATGATGAATTC  1087
      |||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGCTGTGCAGGTTGCTCAGATATGATGAATTC  1072

seq1: chr17_89800075_89801213
seq2: B6Ng01-112K08.g_69_1213

seq1  GAATTCATTTGGTAGAGAACACAGCGAGGGGGAAGCCAAGGTTGGTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGGTAGAGAACACAGCGAGGGGGAAGCCAAGGTTGGTCTAT  50

seq1  TGTCATAGTGTACTAATAGGATGAATTCAAATGGAACCAGATAGATTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAGTGTACTAATAGGATGAATTCAAATGGAACCAGATAGATTTGT  100

seq1  CTTTCTTGATTTACCTTTGAGAGAAAAGAAGATGGTATACAAATCCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGATTTACCTTTGAGAGAAAAGAAGATGGTATACAAATCCCAGG  150

seq1  CCTAATAATTGTTCTGCCTTGTGACAGAGACAAATACCTGCATTTGAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAATTGTTCTGCCTTGTGACAGAGACAAATACCTGCATTTGAGTA  200

seq1  GAGAATAAAAGTTTAAATGTTTGATAGATTTCTTGTTGTTTTTATTGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAAAAGTTTAAATGTTTGATAGATTTCTTGTTGTTTTTATTGATC  250

seq1  AAAATTTCTCTTGCCCTGGGACTTAATTGTATCTTTTGAAGAAATACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCTCTTGCCCTGGGACTTAATTGTATCTTTTGAAGAAATACAAT  300

seq1  TTTATCTTTTGACTTTTAATAGCCAAATCTTCCACAAGAAATTGTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTTTGACTTTTAATAGCCAAATCTTCCACAAGAAATTGTTTTCT  350

seq1  ATAATTTTAAGAGATAGAAATATTATTAAAATTAGGGGCCCCTTTTATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTAAGAGATAGAAATATTATTAAAATTAGGGGCCCCTTTTATAG  400

seq1  TTCTTAGTTTTGTTTATAAAATGATTCATCAAGAAATTCAGAAAGAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTTTTGTTTATAAAATGATTCATCAAGAAATTCAGAAAGAAATC  450

seq1  TGGAGGAACATCTCATTAGAGTTTGAAAGACAACAGAGCAGATAATCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAACATCTCATTAGAGTTTGAAAGACAACAGAGCAGATAATCTCC  500

seq1  AAATTTTGGTAGCTGTCATAAAGAAGGTAAGAACATCATGTCTTTTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGGTAGCTGTCATAAAGAAGGTAAGAACATCATGTCTTTTAAGT  550

seq1  TAGACATGGGTATAGACAAGCAGGTGAATGGGGGATAAAGGCTCTTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATGGGTATAGACAAGCAGGTGAATGGGGGATAAAGGCTCTTTTAT  600

seq1  TTATATACCTATATTAACCCTATTCTTTATTGCATTTAGGTATTTATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACCTATATTAACCCTATTCTTTATTGCATTTAGGTATTTATGAA  650

seq1  TTACATGGTATTTTTTATAATTTTTATTAGGTATTTTCCTCATTTACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGGTATTTTTTATAATTTTTATTAGGTATTTTCCTCATTTACATT  700

seq1  TCCAATGCTATCCCCAAAGTCCCCCATACCCTCCCTCCCACCCCCTACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGCTATCCCCAAAGTCCCCCATACCCTCCCTCCCACCCCCTACCC  750

seq1  ACCCACTCCCACTTTTTGGCCCTGGATTTTCCCTGTACTAGGGCATATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTCCCACTTTTTGGCCCTGGATTTTCCCTGTACTAGGGCATATAA  800

seq1  AGTTTGCAAGTCCAATTGGCCTCTCTTTCCAGTGATGGCCTACAAAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCAAGTCCAATTGGCCTCTCTTTCCAGTGATGGCCTACAAAGCCA  850

seq1  TC-TTTTGATACATATGCAGCTAGAGTCAAGATCTCCAGGGTACTGGTTA  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGATACATATGCAGCTAGAGTCAAGATCTCCAGGGTACTGGTTA  900

seq1  GTTCATAA-TGTTGTTCCACCTATAGGGTTGCAGATCCCCCCAGCTACTT  948
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAATTGTTGTTCCACCTATAGGGTTGCAGATCCCCCCAGCTACTT  950

seq1  GGTTAC-TTTATCTAGCTCCTCCATTGGGGGCCCTATGATCCATCCAATA  997
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  GGTTACTTTTATCTAGCTCCTCCATTGGGGGCCCTATGATCCATCC-ATA  999

seq1  GCTGACTATGA-GCATCCACTTATGTGTTTGTTAGGCCCCAGAATAGTCT  1046
      ||||||||||| ||||||||||||| ||||| ||||||| ||||||||||
seq2  GCTGACTATGAGGCATCCACTTATGGGTTTG-TAGGCCCAAGAATAGTCT  1048

seq1  CACAAGAGACAGCTATA-TCA-GGGTCCTTTCAGCAAAATCTTGCTAGTG  1094
      ||||||||||||||||| ||| ||||||||||||||||   |||||||| 
seq2  CACAAGAGACAGCTATATTCATGGGTCCTTTCAGCAAATCTTTGCTAGTT  1098

seq1  TGTGCAATGGTGTCA-GCATTTGGAGGCTGTC-TATGGGATGGATCC  1139
       |||||||||||||| |||||||||||||| | ||||||||||||||
seq2  GGTGCAATGGTGTCACGCATTTGGAGGCTGGCTTATGGGATGGATCC  1145