BAC Information

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BAC

Clone NameB6Ng01-112M20
Chromosome17 (Build37)
Map Location 35,862,376 - 36,007,903
singlet/doubletdoublet
Overlap geneIer3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik
Upstream geneC4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663
Downstream geneDhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112M20.bB6Ng01-112M20.g
ACCDH918767DH918768
length1,084653
definitionDH918767|Mus musculus domesticus DNA, BAC clone: B6Ng01-112M20, 5' end.DH918768|Mus musculus domesticus DNA, BAC clone: B6Ng01-112M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,862,376 - 35,863,456)(36,007,254 - 36,007,903)
sequence
gaattcatctagaagcaggggctcatgggtcagcacccgcacccgtctca
tccctctgctgggtctccaacccctgtactgtgaccctgacagcaaagga
gaagtcccaatggcatttgaaaagtgagagcccttactgctcttccccag
cacattgtcaagggttgttgtgttacataactagaggcacgtgtaactca
gaagtgcgacagatccaagctgctgcagaagactgggttgaataggtcag
ttaggaaagctgaatcatgactttgcactcacagaaaagccatttgcagt
gcacacagacgcgcgcgtgccctctaggtgtgaagtgtggaaagggcgtc
ccctggtggcctccttctgaactgcaagccccgcccagcgcagccatgca
atctgagatctcctgaaggactggatttttttcccttcagcgccaacttt
cactcctggcattctctgtcctgagctgacacccagttccaggaagaact
ggcctctggaacaaacttgcacaggcggcccaggagacagtctggctatg
cagcttgtctaaagtaactttgagacgacttcacagggctccattccgct
gcatgcccaaatccccgccctgcaaaaggtgccaggaccgcagggttact
gtgcctgtccctggcacggggcctcattctcagtacagtagctgcccttt
atctaaagctttagtcttcacattttcaaacgctcctgtgtcagccacgc
cacaaaatatggagtggagaattccagaaacaaacagtcatagttctaaa
tgcctcctataggggataccgttataattgtcctatgattagctgtgtta
atttcttatttgtacctagtttatcaattaagcaacagatgaatgcatgg
tgcctggaaatccttaaacttgagaataagaggcagaaggaattcaaggg
aaccctatctttacaaaataaaataaaaataaaaaagctagaggctgcaa
agatggttcagcagttaaaggcacacaggcacgtacatactgctctttgc
agaaggacaggattttggcttccagaacccattg
gaattcattttacctactccatagacttctgtgtcgtcgtcccccccctt
tgtttcaccaccccccagtttctgactgggcttcttaggaatgcataacc
cgaattaggggcgggcagagagggaagtgactcactagatcctctcatca
gctatataaggtcaccagggggccggggaaggaggggaaggtctccagcc
agagaggatgctgggcaaaagcaccagctacagcaccccccccccccaaa
ggactggggtggtgtctgtcatgatggcaggtttgatagaagtagccaga
aaaggaactacttagggaaggtgagggatggtggtaagggttggaataga
gccagcgcaaggcacagtaatccttgctgaggctgcacagacagagaact
gagcggtgaggatggagactcagagaggaagaggtaaatggtcaggtcta
gggaactgtgcagcctcttccccacccccacccccaccccagtgtagctg
cttcctgattctctcaccacatcctgagtagttctttcggggcctgggcc
cagtgttcccactcagtgctaccagccttccgggcccccaccccaaggct
tcttgtttggaaggtctgcttccgcccctccctactgggatgacctaggt
acg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_35862376_35863456
seq2: B6Ng01-112M20.b_43_1126

seq1  GAATTCATCTAGAAGCAGGGGCTCATGGGTCAGCACCCGCACCCGTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTAGAAGCAGGGGCTCATGGGTCAGCACCCGCACCCGTCTCA  50

seq1  TCCCTCTGCTGGGTCTCCAACCCCTGTACTGTGACCCTGACAGCAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGCTGGGTCTCCAACCCCTGTACTGTGACCCTGACAGCAAAGGA  100

seq1  GAAGTCCCAATGGCATTTGAAAAGTGAGAGCCCTTACTGCTCTTCCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCCCAATGGCATTTGAAAAGTGAGAGCCCTTACTGCTCTTCCCCAG  150

seq1  CACATTGTCAAGGGTTGTTGTGTTACATAACTAGAGGCACGTGTAACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGTCAAGGGTTGTTGTGTTACATAACTAGAGGCACGTGTAACTCA  200

seq1  GAAGTGCGACAGATCCAAGCTGCTGCAGAAGACTGGGTTGAATAGGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCGACAGATCCAAGCTGCTGCAGAAGACTGGGTTGAATAGGTCAG  250

seq1  TTAGGAAAGCTGAATCATGACTTTGCACTCACAGAAAAGCCATTTGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAAGCTGAATCATGACTTTGCACTCACAGAAAAGCCATTTGCAGT  300

seq1  GCACACAGACGCGCGCGTGCCCTCTAGGTGTGAAGTGTGGAAAGGGCGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGACGCGCGCGTGCCCTCTAGGTGTGAAGTGTGGAAAGGGCGTC  350

seq1  CCCTGGTGGCCTCCTTCTGAACTGCAAGCCCCGCCCAGCGCAGCCATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTGGCCTCCTTCTGAACTGCAAGCCCCGCCCAGCGCAGCCATGCA  400

seq1  ATCTGAGATCTCCTGAAGGACTGGATTTTTTTCCCTTCAGCGCCAACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGATCTCCTGAAGGACTGGATTTTTTTCCCTTCAGCGCCAACTTT  450

seq1  CACTCCTGGCATTCTCTGTCCTGAGCTGACACCCAGTTCCAGGAAGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGGCATTCTCTGTCCTGAGCTGACACCCAGTTCCAGGAAGAACT  500

seq1  GGCCTCTGGAACAAACTTGCACAGGCGGCCCAGGAGACAGTCTGGCTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGGAACAAACTTGCACAGGCGGCCCAGGAGACAGTCTGGCTATG  550

seq1  CAGCTTGTCTAAAGTAACTTTGAGACGACTTCACAGGGCTCCATTCCGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGTCTAAAGTAACTTTGAGACGACTTCACAGGGCTCCATTCCGCT  600

seq1  GCATGCCCAAATCCCCGCCCTGCAAAAGGTGCCAGGACCGCAGGGTTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCCAAATCCCCGCCCTGCAAAAGGTGCCAGGACCGCAGGGTTACT  650

seq1  GTGCCTGTCCCTGGCACGGGGCCTCATTCTCAGTACAGTAGCTGCCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGTCCCTGGCACGGGGCCTCATTCTCAGTACAGTAGCTGCCCTTT  700

seq1  ATCTAAAGCTTTAGTCTTCACATTTTCAAACGCTCCTGTGTCAGCCACGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAGCTTTAGTCTTCACATTTTCAAACGCTCCTGTGTCAGCCACGC  750

seq1  CACAAAATATGGAGTGGAGAATTCCAGAAACAAACAGTCATAGTTCTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATATGGAGTGGAGAATTCCAGAAACAAACAGTCATAGTTCTAAA  800

seq1  TGCCTCCTATAGGGGATACCGTTATAATTGTCCTATGATTAGCTGTTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGCCTCCTATAGGGGATACCGTTATAATTGTCCTATGATTAGCTG-TGTT  849

seq1  AATTTCTTA-TTGTACCTAGTTTATCAATTAAGCAACAGATGATGGCAT-  898
      ||||||||| |||||||||||||||||||||||||||||||||  |||| 
seq2  AATTTCTTATTTGTACCTAGTTTATCAATTAAGCAACAGATGAATGCATG  899

seq1  GTGCCTGG-AATCCTAAAACTTGAGAGATAGAGGCAGAAGGAATTCAAGG  947
      |||||||| |||||| ||||||||||   |||||||||||||||||||||
seq2  GTGCCTGGAAATCCTTAAACTTGAGAATAAGAGGCAGAAGGAATTCAAGG  949

seq1  TAACCCTATCTTTACAAAAATAAAATAAAAATAAAAAAGCTAGAGGCTGC  997
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAACCCTATCTTTAC-AAAATAAAATAAAAATAAAAAAGCTAGAGGCTGC  998

seq1  AGAGATGGTTCAGCAGTTAAAGGCACACAGGCACGTACATACTGCTC-TT  1046
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGATGGTTCAGCAGTTAAAGGCACACAGGCACGTACATACTGCTCTTT  1048

seq1  GCAG-AGGACAGGATTTTGCTTCCCAGAACCCATTG  1081
      |||| ||||||||||||||  | |||||||||||||
seq2  GCAGAAGGACAGGATTTTGGCTTCCAGAACCCATTG  1084

seq1: chr17_36007254_36007903
seq2: B6Ng01-112M20.g_68_720 (reverse)

seq1  CGTACCTAGGTCAT-CCAGTA-GGAGGGGCGGAAGCAGACCTTCCAAACA  48
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  CGTACCTAGGTCATCCCAGTAGGGAGGGGCGGAAGCAGACCTTCCAAACA  50

seq1  GGAAGCC-TGGGGTGGGGGCCCGGAAGGCTGGTAGCACTGAGTGGGAACA  97
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCTTGGGGTGGGGGCCCGGAAGGCTGGTAGCACTGAGTGGGAACA  100

seq1  CTGGGCCCAGGCCCCGAAAGAACTACTCAGGATGTGGTGAGAGAATCAGG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCCAGGCCCCGAAAGAACTACTCAGGATGTGGTGAGAGAATCAGG  150

seq1  AAGCAGCTACACTGGGGTGGGGGTGGGGGTGGGGAAGAGGCTGCACAGTT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTACACTGGGGTGGGGGTGGGGGTGGGGAAGAGGCTGCACAGTT  200

seq1  CCCTAGACCTGACCATTTACCTCTTCCTCTCTGAGTCTCCATCCTCACCG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGACCTGACCATTTACCTCTTCCTCTCTGAGTCTCCATCCTCACCG  250

seq1  CTCAGTTCTCTGTCTGTGCAGCCTCAGCAAGGATTACTGTGCCTTGCGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTCTCTGTCTGTGCAGCCTCAGCAAGGATTACTGTGCCTTGCGCT  300

seq1  GGCTCTATTCCAACCCTTACCACCATCCCTCACCTTCCCTAAGTAGTTCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTATTCCAACCCTTACCACCATCCCTCACCTTCCCTAAGTAGTTCC  350

seq1  TTTTCTGGCTACTTCTATCAAACCTGCCATCATGACAGACACCACCCCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGCTACTTCTATCAAACCTGCCATCATGACAGACACCACCCCAG  400

seq1  TCCTTTGGGGGGGGGGGGTGCTGTAGCTGGTGCTTTTGCCCAGCATCCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGGGGGGGGGGGTGCTGTAGCTGGTGCTTTTGCCCAGCATCCTC  450

seq1  TCTGGCTGGAGACCTTCCCCTCCTTCCCCGGCCCCCTGGTGACCTTATAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGGAGACCTTCCCCTCCTTCCCCGGCCCCCTGGTGACCTTATAT  500

seq1  AGCTGATGAGAGGATCTAGTGAGTCACTTCCCTCTCTGCCCGCCCCTAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATGAGAGGATCTAGTGAGTCACTTCCCTCTCTGCCCGCCCCTAAT  550

seq1  TCGGGTTATGCATTCCTAAGAAGCCCAGTCAGAAACTGGGGGGTGGTGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTTATGCATTCCTAAGAAGCCCAGTCAGAAACTGGGGGGTGGTGAA  600

seq1  ACAAAGGGGGGGGACGACGACACAGAAGTCTATGGAGTAGGTAAAATGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGGGGGGACGACGACACAGAAGTCTATGGAGTAGGTAAAATGAA  650

seq1  TTC  650
      |||
seq2  TTC  653