BAC Information

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BAC

Clone NameB6Ng01-113C14
Chromosome1 (Build37)17 (Build37)
Map Location 169,508,681 - 169,509,55979,658,326 - 79,658,523
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52
Downstream geneRxrg, Lmx1a, LOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113C14.bB6Ng01-113C14.g
ACCDH919026DH919027
length889529
definitionDH919026|Mus musculus domesticus DNA, BAC clone: B6Ng01-113C14, 5' end.DH919027|Mus musculus domesticus DNA, BAC clone: B6Ng01-113C14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(169,508,681 - 169,509,559)(79,658,326 - 79,658,523)
sequence
gaattctgttaagaaacaggagtggggttggagacatgactcagcagttg
agagtgcttgttgctcttgcagaaaacaacactcacacggtgactcacaa
ccattcataaatccggttccaggggctctgataccacatatgttgtatag
atacatacacatacactggcaaaacactcatacatgtatgatatacaata
aaataaacaaatctaaattttttttctaaataaagaaaacaggactacac
tctcacaaaagatctctgtgctggcttcagaaatgaatcaatttacagtg
tcaatcaaatactatgaagaggtgcccaaatgttaaatgtttgggttaaa
gcaacatcacacacacacacacacacacacacacacacacacaggcatct
aggtgaataaataaaacacaaactccagaaaacaatcacaacaacaaaaa
agtaaaaattaatttttatttttaattggtatatgaatatatgtaaaaac
acatacacataagagcagatgccaaaggaaggcgttggatcccctggagc
cagagttacaggagttgtaagccatccaacacgggtactggcgtccaaac
ttgcgtcctctgcaagggcagctcctgggtctttcaccaccaaagccatc
gctccagcaattacttcaaagtgaaaccttttttgaataaattctaactg
gtgttagcgatttcagagagacatcccatgcataaaacaaaaactactgc
tgtaaatatgtaacatgcagacagcaaagagttattataaaataaagttt
taaaaaattctcccagcaacacagattgagagagagacagagactgatag
agagacagagacagaagggaggaaggaggagggggaaga
gaattcatacatcatccatagttcttgtgcagggctgaggccttgcagtc
tctcccctgcccacgttggcttgtctgttgttgtcgtctctgttcagctc
atggttaggcagccatgttggtgagactttatggctatagcctctgactt
tgctaggagacacagtaacccccaatcctctggctctgattatcttccca
ccctctcttcctcaatattccctgagccttgtgttagggagttgggtctg
agttccacaactctgcattttgatggttgctgttttctgtaatggtctct
gtctgttgtaaagagaagttttttttttccttagttaaaaaacaaaaaaa
cccaaaaaaacctcttttattatgtttcaatcatgtgtctctgtgtgtgg
atttctctgtgtgagtgtagtgcctacagagcccagaggaggacatggtt
tttctggaactggagttacaggtggttgtgggccatccaatgtgggtgct
gggaactgaactcaggtcctctgcaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_169508681_169509559
seq2: B6Ng01-113C14.b_49_937 (reverse)

seq1  TCTTCCCCCTCCTCC-TCCT-CCTTCTGTCTCTGTCTCTCTCTCTGTCTC  48
      ||||||||||||||| |||| |||||||||||||||||||| || |||||
seq2  TCTTCCCCCTCCTCCTTCCTCCCTTCTGTCTCTGTCTCTCTATCAGTCTC  50

seq1  TGTCTCTCTCTCAATCTGTGTTGCTGGGAGAATTTTTTAAAACTTTATTT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCTCTCAATCTGTGTTGCTGGGAGAATTTTTTAAAACTTTATTT  100

seq1  TATAATAACTC-TTGCTGTCTGCATGTTACATATTTACAGCAGTAGTTTT  147
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATAATAACTCTTTGCTGTCTGCATGTTACATATTTACAGCAGTAGTTTT  150

seq1  TGTTTTATGCATGGGATGTCTCTCTG-AATCGCTAACACCAGTTAGAA-T  195
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  TGTTTTATGCATGGGATGTCTCTCTGAAATCGCTAACACCAGTTAGAATT  200

seq1  TATTC-AAAAAGGTTTCACTTTG-AGTAATTGCTGGAGCGATGGC-TTGG  242
      ||||| ||||||||||||||||| ||||||||||||||||||||| ||||
seq2  TATTCAAAAAAGGTTTCACTTTGAAGTAATTGCTGGAGCGATGGCTTTGG  250

seq1  TGGTG-AAGA-CCAGGAGCTGCCCTTGCAGAGGACGCAAGTTTGGACGCC  290
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAAGACCCAGGAGCTGCCCTTGCAGAGGACGCAAGTTTGGACGCC  300

seq1  AGTACCCGTGTTGGATGGCTTACAACTCCTGTAACTCTGGCTCCAGGGGA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCGTGTTGGATGGCTTACAACTCCTGTAACTCTGGCTCCAGGGGA  350

seq1  TCCAACGCCTTCCTTTGGCATCTGCTCTTATGTGTATGTGTTTTTACATA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACGCCTTCCTTTGGCATCTGCTCTTATGTGTATGTGTTTTTACATA  400

seq1  TATTCATATACCAATTAAAAATAAAAATTAATTTTTACTTTTTTGTTGTT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATATACCAATTAAAAATAAAAATTAATTTTTACTTTTTTGTTGTT  450

seq1  GTGATTGTTTTCTGGAGTTTGTGTTTTATTTATTCACCTAGATGCCTGTG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGTTTTCTGGAGTTTGTGTTTTATTTATTCACCTAGATGCCTGTG  500

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGTTGCTTTAACCCAAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGTTGCTTTAACCCAAA  550

seq1  CATTTAACATTTGGGCACCTCTTCATAGTATTTGATTGACACTGTAAATT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAACATTTGGGCACCTCTTCATAGTATTTGATTGACACTGTAAATT  600

seq1  GATTCATTTCTGAAGCCAGCACAGAGATCTTTTGTGAGAGTGTAGTCCTG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATTTCTGAAGCCAGCACAGAGATCTTTTGTGAGAGTGTAGTCCTG  650

seq1  TTTTCTTTATTTAGAAAAAAAATTTAGATTTGTTTATTTTATTGTATATC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTATTTAGAAAAAAAATTTAGATTTGTTTATTTTATTGTATATC  700

seq1  ATACATGTATGAGTGTTTTGCCAGTGTATGTGTATGTATCTATACAACAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTATGAGTGTTTTGCCAGTGTATGTGTATGTATCTATACAACAT  750

seq1  ATGTGGTATCAGAGCCCCTGGAACCGGATTTATGAATGGTTGTGAGTCAC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTATCAGAGCCCCTGGAACCGGATTTATGAATGGTTGTGAGTCAC  800

seq1  CGTGTGAGTGTTGTTTTCTGCAAGAGCAACAAGCACTCTCAACTGCTGAG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGAGTGTTGTTTTCTGCAAGAGCAACAAGCACTCTCAACTGCTGAG  850

seq1  TCATGTCTCCAACCCCACTCCTGTTTCTTAACAGAATTC  879
      |||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCTCCAACCCCACTCCTGTTTCTTAACAGAATTC  889

seq1: chr17_79658326_79658523
seq2: B6Ng01-113C14.g_405_597

seq1  AAAAAACAAAAAAACCCCAAAATATTAAAGATTCATTTATTTGATTTTAT  50
      ||||||||||||||||| ||      |||   || ||||||   ||| | 
seq2  AAAAAACAAAAAAACCCAAA------AAAACCTCTTTTATTATGTTTCAA  44

seq1  ACA----TCTGAGTATTTTGCCTGCACGTATGTATGTGTACCACATATGT  96
       ||    |||  || | | |  | | | | |||  |||||        ||
seq2  TCATGTGTCTCTGTGTGTGGATTTCTC-TGTGTGAGTGTA--------GT  85

seq1  GGCT----AGTACTCACGAAGACACTGATTACGTGGAATTAGAGTTATGG  142
      | ||    ||  |  | || ||||  | ||   ||||| | ||||||  |
seq2  GCCTACAGAGCCCAGAGGAGGACATGGTTTTTCTGGAACTGGAGTTACAG  135

seq1  ACAGTTATGAGC--TTCCGTGTGGGTGCTGGGAACTGAACCAGGGTCCTT  190
         ||| || ||  | |  |||||||||||||||||||||   |||||| 
seq2  GTGGTTGTGGGCCATCCAATGTGGGTGCTGGGAACTGAACTCAGGTCCTC  185

seq1  TGCAAGAG  198
      ||||||||
seq2  TGCAAGAG  193