BAC Information

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BAC

Clone NameB6Ng01-113C18
Chromosome17 (Build37)
Map Location 75,484,877 - 75,664,224
singlet/doubletdoublet
Overlap geneLtbp1, EG621988
Upstream geneMemo1, EG668716, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27, LOC100043672
Downstream geneRasgrp3, 2810405J04Rik, LOC668787, LOC100043885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113C18.bB6Ng01-113C18.g
ACCDH919034DH919035
length1,1181,019
definitionDH919034|Mus musculus domesticus DNA, BAC clone: B6Ng01-113C18, 5' end.DH919035|Mus musculus domesticus DNA, BAC clone: B6Ng01-113C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,484,877 - 75,485,995)(75,663,209 - 75,664,224)
sequence
gaattcatgttacctctgccccttcctatataaacttctgagagttctca
tgtgaagcccgaagcagtctgctcacccaaacgcttcctcccttagctga
cagagccctggtttacatctttcatgatgtctttttaaagaaccagaaat
gagtcccatacccctgccttataattctataataacccacctattaggga
gagggtagtcaaatcgtctgcaagtataagttttcctcacactggtgcag
actttccagtgatgtcttgagccatccacactcctgtaataaactcactg
gttcattaagctattgtgtgtttctattcttattagttaatacttaaaat
agttaaatataagctaaccataaaagtatataacagagattgcatactta
ttttgtgacatttattcctaagtaatatggtttttgtttgtttgtttgtt
tcaggtgtggcatgcatttgtttaattatctgctaaggtctaaagttgcc
aggaaggttcttaggattttctctgtgggtgactcagcccaggtgacgtc
cacatgatagaaatcacagtattgcttcagaattggaaatactgcgcaaa
cctagtgaaaaagtgccgttctttaaaattaaaaaacaaaggccacatgt
ttttgtgttcaaattaatttaagttatttgtaaaaaaataaagagataat
gaagctttcagctataccctctgaattgaactctttcatcctggaagaag
cctcgttaagactgaggaagaaaatgaaacttaacaagattcaggaaaga
agcacagtttacaagtctcaggaagttcctgcagtttaagagagtcacaa
ggcccctccgtatggttatacaagcagtaacagttgctaaggagagggta
gccaaatcgtctgcaggtataagttttcctcacgcttgtgcagactttcc
agtgatgtggttgtcttgagccatccccactcctgtaataaatcacctgg
ttcatttagctagaagtgggagggaattgtatctttgatgttttggttag
tgccctttttgggtgggaaagacttttgttcctgcgctccgtctctttct
ctgaaaaagtctcacaca
gaattcaactgagaacctaaggctggaaagtagtggagaggactcaaaga
tgtcaggggctttagtctaagaaaagaggaaaggtttcataaatggagaa
tgccaggaggtgaggaattctgtttcacagttcaaggtcccattgtgata
cccaagcataaacatccagcagtagaaggttctggaataaagtaagagta
gaatactgtgcctggaaacagatgccccatgggccagtcctggaaaaatc
aaaaggatctgagaggggaagatacaagtgagatgactaaaatataaaac
aaaagccttcatagtcctgtgtaaaggtaatcaagactgaaaaaaaaaag
aatatgttaaaaatgaaaaactagtagccatttttatttgatccagtgtg
ggctatgaaggttaacaattaacagatgttggccgttagcgtgcctatgt
caaggaactttcatgtctttccatcacgaattcttctgcaatctttttat
ggagagtcttaaatttattaatttcctaaattaagattggacacaatgat
aaagtattacagaatcttcacatcaaaatcaaatactccccttaataaat
cattattcaagaaaatattattgaaacataaattctagaagaatttctac
aaagtcatggttatttacattataggtatttcctctaagccacacacttt
taacatttttcatttctaagttttttcactgtctgaggtattagattcca
tgagaacactttcatttgagtacatgttggatgctgagcagtgcttttta
gttaacatcagtgacaaatgtacctttttgcatgatatacaaaatgaaaa
attagtgcatatatgttacataaagatgtatcaagcgccaactggatgca
tctggaaacaactagattgtacccagaagaagacctggcccagcacctga
tcgtcctattctttttttttattttttattttttgggactggtgtacctg
ggctgggaaccagtctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_75484877_75485995
seq2: B6Ng01-113C18.b_43_1160

seq1  GAATTCATGTTACCTCTGCCCCTTCCTATATAAACTTCTGAGAGTTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTACCTCTGCCCCTTCCTATATAAACTTCTGAGAGTTCTCA  50

seq1  TGTGAAGCCCGAAGCAGTCTGCTCACCCAAACGCTTCCTCCCTTAGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGCCCGAAGCAGTCTGCTCACCCAAACGCTTCCTCCCTTAGCTGA  100

seq1  CAGAGCCCTGGTTTACATCTTTCATGATGTCTTTTTAAAGAACCAGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCCTGGTTTACATCTTTCATGATGTCTTTTTAAAGAACCAGAAAT  150

seq1  GAGTCCCATACCCCTGCCTTATAATTCTATAATAACCCACCTATTAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCATACCCCTGCCTTATAATTCTATAATAACCCACCTATTAGGGA  200

seq1  GAGGGTAGTCAAATCGTCTGCAAGTATAAGTTTTCCTCACACTGGTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTAGTCAAATCGTCTGCAAGTATAAGTTTTCCTCACACTGGTGCAG  250

seq1  ACTTTCCAGTGATGTCTTGAGCCATCCACACTCCTGTAATAAACTCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCAGTGATGTCTTGAGCCATCCACACTCCTGTAATAAACTCACTG  300

seq1  GTTCATTAAGCTATTGTGTGTTTCTATTCTTATTAGTTAATACTTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTAAGCTATTGTGTGTTTCTATTCTTATTAGTTAATACTTAAAAT  350

seq1  AGTTAAATATAAGCTAACCATAAAAGTATATAACAGAGATTGCATACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATATAAGCTAACCATAAAAGTATATAACAGAGATTGCATACTTA  400

seq1  TTTTGTGACATTTATTCCTAAGTAATATGGTTTTTGTTTGTTTGTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGACATTTATTCCTAAGTAATATGGTTTTTGTTTGTTTGTTTGTT  450

seq1  TCAGGTGTGGCATGCATTTGTTTAATTATCTGCTAAGGTCTAAAGTTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGTGGCATGCATTTGTTTAATTATCTGCTAAGGTCTAAAGTTGCC  500

seq1  AGGAAGGTTCTTAGGATTTTCTCTGTGGGTGACTCAGCCCAGGTGACGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGTTCTTAGGATTTTCTCTGTGGGTGACTCAGCCCAGGTGACGTC  550

seq1  CACATGATAGAAATCACAGTATTGCTTCAGAATTGGAAATACTGCGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGATAGAAATCACAGTATTGCTTCAGAATTGGAAATACTGCGCAAA  600

seq1  CCTAGTGAAAAAGTGCCGTTCTTTAAAATTAAAAAACAAAGGCCACATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGAAAAAGTGCCGTTCTTTAAAATTAAAAAACAAAGGCCACATGT  650

seq1  TTTTGTGTTCAAATTAATTTAAGTTATTTGTAAAAAAATAAAGAGATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTTCAAATTAATTTAAGTTATTTGTAAAAAAATAAAGAGATAAT  700

seq1  GAAGCTTTCAGCTATACCCTCTGAATTGAACTCTTTCATCCTGGAAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTCAGCTATACCCTCTGAATTGAACTCTTTCATCCTGGAAGAAG  750

seq1  CCTCGTTAAGACTGAGGAAGAAAATGAAACTTAACAAGATTCAGGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTTAAGACTGAGGAAGAAAATGAAACTTAACAAGATTCAGGAAAGA  800

seq1  AGCACAGTTTACAAGTCTCAGGAAGTTCCTGCAGTTTAAGAGAGTCACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGTTTACAAGTCTCAGGAAGTTCCTGCAGTTTAAGAGAGTCACAA  850

seq1  GGCCCCTCCGTATGGTTATACAAGCAGTAACAGTTGCTAAGGAGAGGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTCCGTATGGTTATACAAGCAGTAACAGTTGCTAAGGAGAGGGTA  900

seq1  GCCAAATCGTCTGCAGGTATAAGTTTTCCTCACGCTTGTGCAGACTTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATCGTCTGCAGGTATAAGTTTTCCTCACGCTTGTGCAGACTTTCC  950

seq1  AGTGATGTGGTTGTCTTGAGCCATCCCCACTCCTGTAATAAATTCACTGG  1000
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  AGTGATGTGGTTGTCTTGAGCCATCCCCACTCCTGTAATAAATCACCTGG  1000

seq1  TTCATTAAGCTAG-AGTGGGAGGGAATTGTATCTTTGATGTTTT-GTTAG  1048
      |||||| |||||| |||||||||||||||||||||||||||||| |||||
seq2  TTCATTTAGCTAGAAGTGGGAGGGAATTGTATCTTTGATGTTTTGGTTAG  1050

seq1  TGCCCTTTTTGGGGTGGAAAGACATTTGTTCATGCTCCCCCGCCCCTCTC  1098
      |||||||||||||  |||||||| ||||||| ||| | |   |  |||| 
seq2  TGCCCTTTTTGGGTGGGAAAGACTTTTGTTCCTGCGCTC---CGTCTCTT  1097

seq1  CCCCCAAAAAAGTCTCACACA  1119
       | |  |||||||||||||||
seq2  TCTCTGAAAAAGTCTCACACA  1118

seq1: chr17_75663209_75664224
seq2: B6Ng01-113C18.g_68_1086 (reverse)

seq1  AAAAGACT-GTTACCAGCACA-GTACA-CAGTCCAAAAAAAAAAAAAAAA  47
      |||||||| ||| ||||| || ||||| ||||||    |||||| |||||
seq2  AAAAGACTGGTTCCCAGCCCAGGTACACCAGTCC---CAAAAAATAAAAA  47

seq1  AAAAAAAAAAAGAATAGGACGATCAGGTGCTGGGCCAGGTCTTCTTCTGG  97
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAAAGAATAGGACGATCAGGTGCTGGGCCAGGTCTTCTTCTGG  97

seq1  GTACAATCTAGTTGTTTCCAGATGCATCCAGTTGGCGCTTGATACATC-T  146
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTACAATCTAGTTGTTTCCAGATGCATCCAGTTGGCGCTTGATACATCTT  147

seq1  TATGTAACATATATGCACTAATTTTTCA-TTTGTATATCATGCAACAAGG  195
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  TATGTAACATATATGCACTAATTTTTCATTTTGTATATCATGCAAAAAGG  197

seq1  TACATTTTGTCACTGATGTTAACT-AAAAGCACTGCTCAGCATCCAACAT  244
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  TACA-TTTGTCACTGATGTTAACTAAAAAGCACTGCTCAGCATCCAACAT  246

seq1  GTACTCAAATGAAAGTGTTCTCATGGAATCTAATACCTCAGACAGTGAAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCAAATGAAAGTGTTCTCATGGAATCTAATACCTCAGACAGTGAAA  296

seq1  AAACTTAGAAATG-AAAATGTTAAAAGTGTGTGGCTTAGAGGAAATACCT  343
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGAAATGAAAAATGTTAAAAGTGTGTGGCTTAGAGGAAATACCT  346

seq1  ATAATGTAAATAACCATGACTTTGTAGAAATTCTTCTAGAATTTATGTTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTAAATAACCATGACTTTGTAGAAATTCTTCTAGAATTTATGTTT  396

seq1  CAATAATATTTTCTTGAATAATGATTTATTAAGGGGAGTATTTGATTTTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATATTTTCTTGAATAATGATTTATTAAGGGGAGTATTTGATTTTG  446

seq1  ATGTGAAGATTCTGTAATACTTTATCATTGTGTCCAATCTTAATTTAGGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGATTCTGTAATACTTTATCATTGTGTCCAATCTTAATTTAGGA  496

seq1  AATTAATAAATTTAAGACTCTCCATAAAAAGATTGCAGAAGAATTCGTGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATAAATTTAAGACTCTCCATAAAAAGATTGCAGAAGAATTCGTGA  546

seq1  TGGAAAGACATGAAAGTTCCTTGACATAGGCACGCTAACGGCCAACATCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGACATGAAAGTTCCTTGACATAGGCACGCTAACGGCCAACATCT  596

seq1  GTTAATTGTTAACCTTCATAGCCCACACTGGATCAAATAAAAATGGCTAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTGTTAACCTTCATAGCCCACACTGGATCAAATAAAAATGGCTAC  646

seq1  TAGTTTTTCATTTTTAACATATTCTTTTTTTTTTCAGTCTTGATTACCTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTCATTTTTAACATATTCTTTTTTTTTTCAGTCTTGATTACCTT  696

seq1  TACACAGGACTATGAAGGCTTTTGTTTTATATTTTAGTCATCTCACTTGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGGACTATGAAGGCTTTTGTTTTATATTTTAGTCATCTCACTTGT  746

seq1  ATCTTCCCCTCTCAGATCCTTTTGATTTTTCCAGGACTGGCCCATGGGGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCCCTCTCAGATCCTTTTGATTTTTCCAGGACTGGCCCATGGGGC  796

seq1  ATCTGTTTCCAGGCACAGTATTCTACTCTTACTTTATTCCAGAACCTTCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTTCCAGGCACAGTATTCTACTCTTACTTTATTCCAGAACCTTCT  846

seq1  ACTGCTGGATGTTTATGCTTGGGTATCACAATGGGACCTTGAACTGTGAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGATGTTTATGCTTGGGTATCACAATGGGACCTTGAACTGTGAA  896

seq1  ACAGAATTCCTCACCTCCTGGCATTCTCCATTTATGAAACCTTTCCTCTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTCCTCACCTCCTGGCATTCTCCATTTATGAAACCTTTCCTCTT  946

seq1  TTCTTAGACTAAAGCCCCTGACATCTTTGAGTCCTCTCCACTACTTTCCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGACTAAAGCCCCTGACATCTTTGAGTCCTCTCCACTACTTTCCA  996

seq1  GCCTTAGGTTCTCAGTTGAATTC  1016
      |||||||||||||||||||||||
seq2  GCCTTAGGTTCTCAGTTGAATTC  1019