BAC Information

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BAC

Clone NameB6Ng01-113K09
Chromosome17 (Build37)
Map Location 15,162,275 - 15,324,079
singlet/doubletdoublet
Overlap gene9030025P20Rik, Tcte3
Upstream geneEG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301
Downstream geneC330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113K09.bB6Ng01-113K09.g
ACCDH919388DH919389
length979693
definitionDH919388|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K09, 5' end.DH919389|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,323,097 - 15,324,079)(15,162,275 - 15,162,967)
sequence
gaattcagggtttgcaataagtatttttagacaaaatacttcctattgga
tgatccagtgatttagcaagttgtccattgctggaatccaggctactggc
agccattcttggtaggaccagagctattgaaaaaggcttcttattggctg
actggggttgtttgaatgacaatggcctccataggctcatctattttaat
tcttggtcctcattggtggaacagtttggggaggactaggaggtgtggcc
ttgttggaggaagtgtgtcacagagtgggttttgtggcttctaaagcctc
ctgccattcctaattctgtctctgtctcttagttgtggatcaagttgtga
gtgctcagctgttcctgtcaacatggctttgctctgatgaactctaaccc
tctgaagtcataatcaatcaaacgcgttctttttttatgttaccttggtc
atggtattttactgaagcaataggaaagtaactaagacgttgactcgggc
agtatgcttgggcatgtagatggtgtaccaggagtttccagtttagaagt
tgcgggtactgggagtatttcttcttgggtcatctaagtttgaacagaag
tttctactaagggcatatggctgcgattggctggaacacagggctgtgac
aagcatttgcattgaggggtcttgtactaatactctgtatttctgttggt
agttctaatttcccattctaaaaatcttctcattagagactgcaagaaac
tataaattgtgtgtgttttctttcttgctgcagaagttagacataacctc
tgggtgaggctgctgtgtgcctcagagccagacttgttctctttcagtgt
ttctatgttcacatttagcagacccttcatgctgctcatgtgcagtcaga
agtattctcaaggcagtatctcaaggggtcagagtcaggcattgctagta
tcccttttcgaggtgaaatagggcatgtt
gaattcctggaaaaggaagccaattgtccaatggtgtttggacaggattt
atattgatgttagtgcttagacttcgccacaggaaaggccgtaccccacc
ctttgaaaagagcaccaggaagacaacaggtccaatggacaaaggcaagg
ggcagagaggcaggcctacatcccccaccccccatcccctccactcccca
caacacttccaagaatgtaggggaccaaaccagaaaaggtggtggtgatc
tagctcttggattttagaattcgagttccctttcacagccacagcttcta
gctccagaaagtaagcccagcacttctctcctcctttgaaatatatatag
tgtatccacatgaagtatagagccgacaaataatgtagaggtgaagggag
tgcctgccatagagcaggatgtctgcagcttcaagataaagtgatacaca
aatatatataactgaacttaagggcatcgtaggtgggaaagagcatactt
gcaattaaaaaacaaaaagattttaatgttataaaatttgaaagttaaga
aatgagagagggggccgggcgtggtggcacatgcctttaatcccagcact
cgggaggcagaggcaggtggatttctgaattcgaggccaacctggtcaac
aaagtgagttccaggacagccagggctatacagagaaaccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_15323097_15324079
seq2: B6Ng01-113K09.b_47_1025 (reverse)

seq1  AAGATGCCCTATTCAACCTCTGAAAGTGATACTAGCAATGCCTGGCTCTG  50
      || ||||||||||  |||||  |||| ||||||||||||||||| |||| 
seq2  AACATGCCCTATTTCACCTCGAAAAGGGATACTAGCAATGCCTGACTCT-  49

seq1  GACCCCTTGAGTGACTGCCTTGAGACTAACTTCTGACTGCACATTGAGCA  100
      |||||||||||  |||||||||||| | ||||||||||||||| ||||||
seq2  GACCCCTTGAGATACTGCCTTGAGAAT-ACTTCTGACTGCACA-TGAGCA  97

seq1  GCATGAGGGTCCTGCTAAATGTGAAACATAGAAACACTGAAAGAGAACAA  150
      |||||| ||  |||||||||||| ||||||||||||||||||||||||||
seq2  GCATGAAGGGTCTGCTAAATGTG-AACATAGAAACACTGAAAGAGAACAA  146

seq1  GTCTGGGCTCTGAGGCACACAGCAGCCTCACCCAGAGGTTATGTCTAACT  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCT-GGCTCTGAGGCACACAGCAGCCTCACCCAGAGGTTATGTCTAACT  195

seq1  TCTGCAGCCAGAAAG-AAACACACACAATTTATAGTTTCTTGCAGTCTCT  249
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCAAGAAAGAAAACACACACAATTTATAGTTTCTTGCAGTCTCT  245

seq1  AATGAGAAGATTTTTAGAATGGGAAATTAGAACTACCAACAGAAATACAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAGATTTTTAGAATGGGAAATTAGAACTACCAACAGAAATACAG  295

seq1  AGTATTAGTACAAGACCCCTCAATGCAAATGCTTGTCACAGCCCTGTGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAGTACAAGACCCCTCAATGCAAATGCTTGTCACAGCCCTGTGTT  345

seq1  CCAGCCAATCGCAGCCATATGCCCTTAGTAGAAACTTCTGTTCAAACTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAATCGCAGCCATATGCCCTTAGTAGAAACTTCTGTTCAAACTTA  395

seq1  GATGACCCAAGAAGAAATACTCCCAGTACCCGCAACTTCTAAACTGGAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCCAAGAAGAAATACTCCCAGTACCCGCAACTTCTAAACTGGAAA  445

seq1  CTCCTGGTACACCATCTACATGCCCAAGCATACTGCCCGAGTCAACGTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGTACACCATCTACATGCCCAAGCATACTGCCCGAGTCAACGTCT  495

seq1  TAGTTACTTTCCTATTGCTTCAGTAAAATACCATGACCAAGGTAACATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACTTTCCTATTGCTTCAGTAAAATACCATGACCAAGGTAACATAA  545

seq1  AAAAAGAACGCGTTTGATTGATTATGACTTCAGAGGGTTAGAGTTCATCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAACGCGTTTGATTGATTATGACTTCAGAGGGTTAGAGTTCATCA  595

seq1  GAGCAAAGCCATGTTGACAGGAACAGCTGAGCACTCACAACTTGATCCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAGCCATGTTGACAGGAACAGCTGAGCACTCACAACTTGATCCAC  645

seq1  AACTAAGAGACAGAGACAGAATTAGGAATGGCAGGAGGCTTTAGAAGCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGAGACAGAGACAGAATTAGGAATGGCAGGAGGCTTTAGAAGCCA  695

seq1  CAAAACCCACTCTGTGACACACTTCCTCCAACAAGGCCACACCTCCTAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCCACTCTGTGACACACTTCCTCCAACAAGGCCACACCTCCTAGT  745

seq1  CCTCCCCAAACTGTTCCACCAATGAGGACCAAGAATTAAAATAGATGAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCAAACTGTTCCACCAATGAGGACCAAGAATTAAAATAGATGAGC  795

seq1  CTATGGAGGCCATTGTCATTCAAACAACCCCAGTCAGCCAATAAGAAGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAGGCCATTGTCATTCAAACAACCCCAGTCAGCCAATAAGAAGCC  845

seq1  TTTTTCAATAGCTCTGGTCCTACCAAGAATGGCTGCCAGTAGCCTGGATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAATAGCTCTGGTCCTACCAAGAATGGCTGCCAGTAGCCTGGATT  895

seq1  CCAGCAATGGACAACTTGCTAAATCACTGGATCATCCAATAGGAAGTATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAATGGACAACTTGCTAAATCACTGGATCATCCAATAGGAAGTATT  945

seq1  TTGTCTAAAAATACTTATTGCAAACCCTGAATTC  983
      ||||||||||||||||||||||||||||||||||
seq2  TTGTCTAAAAATACTTATTGCAAACCCTGAATTC  979

seq1: chr17_15162275_15162967
seq2: B6Ng01-113K09.g_71_763

seq1  GAATTCCTGGAAATGGAAGCCAATTGTCCAATGGTGTTTGGACAGGATTT  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAAAAGGAAGCCAATTGTCCAATGGTGTTTGGACAGGATTT  50

seq1  ATATTGATGTTAGTGCTTAGACTTCGCCACAGGAAAGGCCGTACCCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGATGTTAGTGCTTAGACTTCGCCACAGGAAAGGCCGTACCCCACC  100

seq1  CTTTGAAAAGAGCACCAGGAAGACAACAGGTCCAATGGACAAAGGCAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAAGAGCACCAGGAAGACAACAGGTCCAATGGACAAAGGCAAGG  150

seq1  GGCAGAGAGGCAGGCCTACATCCCCCACCCCCCATCCCCTCCACTCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAGGCAGGCCTACATCCCCCACCCCCCATCCCCTCCACTCCCCA  200

seq1  CAACACTTCCAAGAATGTAGGGGACCAAACCAGAAAAGGTGGTGGTGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTTCCAAGAATGTAGGGGACCAAACCAGAAAAGGTGGTGGTGATC  250

seq1  TAGCTCTTGGATTTTAGAATTCGAGTTCCCTTTCACAGCCACAGCTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTTGGATTTTAGAATTCGAGTTCCCTTTCACAGCCACAGCTTCTA  300

seq1  GCTCCAGAAAGTAAGCCCAGCACTTCTCTCCTCCTTTGAAATATATATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGAAAGTAAGCCCAGCACTTCTCTCCTCCTTTGAAATATATATAG  350

seq1  TGTATCCACATGAAGTATAGAGCCGACAAATAATGTAGAGGTGAAGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCACATGAAGTATAGAGCCGACAAATAATGTAGAGGTGAAGGGAG  400

seq1  TGCCTGCCATAGAGCAGGATGTCTGCAGCTTCAAGATAAAGTGATACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCATAGAGCAGGATGTCTGCAGCTTCAAGATAAAGTGATACACA  450

seq1  AATATATATAACTGAACTTAAGGGCATCGTAGGTGGGAAAGAGCATACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATAACTGAACTTAAGGGCATCGTAGGTGGGAAAGAGCATACTT  500

seq1  GCAATTAAAAAACAAAAAGATTTTAATGTTATAAAATTTGAAAGTTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTAAAAAACAAAAAGATTTTAATGTTATAAAATTTGAAAGTTAAGA  550

seq1  AATGAGAGAGGGGGCCGGGCGTGGTGGCACATGCCTTTAATCCCAGCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAGAGGGGGCCGGGCGTGGTGGCACATGCCTTTAATCCCAGCACT  600

seq1  CGGGAGGCAGAGGCAGGTGGATTTCTGAATTCGAGGCCAACCTGGTCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGGCAGAGGCAGGTGGATTTCTGAATTCGAGGCCAACCTGGTCAAC  650

seq1  AAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTG  693
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTG  693